ENSG00000174231

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000304992 ENSG00000174231 HEK293_OSMI2_6hA HEK293_TMG_6hB PRPF8 protein_coding protein_coding 247.677 297.4405 174.7949 44.00258 7.653069 -0.7669042 163.42588 229.46514 150.0220597 33.986536 6.3241290 -0.6130671 0.72630417 0.77163333 0.8584000000 0.08676667 0.001559713 0.001559713 FALSE TRUE
ENST00000571958 ENSG00000174231 HEK293_OSMI2_6hA HEK293_TMG_6hB PRPF8 protein_coding protein_coding 247.677 297.4405 174.7949 44.00258 7.653069 -0.7669042 28.17189 30.51758 0.1677159 11.369897 0.1677159 -7.4243966 0.07352917 0.09526667 0.0009666667 -0.09430000 0.001567205 0.001559713 FALSE FALSE
ENST00000572723 ENSG00000174231 HEK293_OSMI2_6hA HEK293_TMG_6hB PRPF8 protein_coding retained_intron 247.677 297.4405 174.7949 44.00258 7.653069 -0.7669042 21.96734 11.21615 2.3171975 2.220981 0.6567544 -2.2701980 0.06122917 0.03703333 0.0130000000 -0.02403333 0.017115119 0.001559713 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000174231 E001 5.403561 0.0056381844 6.349545e-03 4.145390e-02 17 1650629 1650629 1 - 0.422 0.934 2.206
ENSG00000174231 E002 11.194075 0.0183020048 2.453021e-02 1.107806e-01 17 1650630 1650630 1 - 0.801 1.192 1.450
ENSG00000174231 E003 1734.977414 1.7732742094 3.692826e-01 6.034997e-01 17 1650631 1650839 209 - 2.872 3.351 1.594
ENSG00000174231 E004 925.792672 1.5916847581 3.614710e-01 5.969087e-01 17 1650840 1650846 7 - 2.618 3.075 1.519
ENSG00000174231 E005 2156.286297 1.8470458287 3.891566e-01 6.198318e-01 17 1650847 1650956 110 - 2.979 3.443 1.541
ENSG00000174231 E006 3274.048042 1.9830732677 4.211341e-01 6.444945e-01 17 1651108 1651310 203 - 3.181 3.620 1.459
ENSG00000174231 E007 2355.811280 1.8945064614 4.224228e-01 6.454215e-01 17 1651414 1651553 140 - 3.049 3.474 1.415
ENSG00000174231 E008 1056.265057 1.6470181758 3.860642e-01 6.173501e-01 17 1651648 1651662 15 - 2.695 3.127 1.436
ENSG00000174231 E009 1861.028570 1.8312461525 4.243833e-01 6.468587e-01 17 1651663 1651788 126 - 2.957 3.370 1.373
ENSG00000174231 E010 14.425549 0.4668661886 7.938532e-01 8.926460e-01 17 1651789 1651980 192 - 1.263 1.112 -0.535
ENSG00000174231 E011 7.158698 0.3583424601 7.151837e-01 8.450803e-01 17 1651981 1652037 57 - 0.937 0.876 -0.235
ENSG00000174231 E012 8.196965 0.3587288780 7.413661e-01 8.613269e-01 17 1652038 1652146 109 - 1.013 0.911 -0.380
ENSG00000174231 E013 34.936859 0.8145240314 8.068411e-01 9.002423e-01 17 1652731 1653541 811 - 1.638 1.472 -0.567
ENSG00000174231 E014 2222.556227 1.9148970238 4.771538e-01 6.850807e-01 17 1653542 1653683 142 - 3.080 3.435 1.179
ENSG00000174231 E015 3337.815669 2.0474434689 5.119390e-01 7.094167e-01 17 1653777 1654016 240 - 3.279 3.606 1.085
ENSG00000174231 E016 18.252933 0.5753433108 6.416040e-01 7.978855e-01 17 1654017 1654980 964 - 1.399 1.173 -0.792
ENSG00000174231 E017 2923.088860 2.0209570012 5.284658e-01 7.209587e-01 17 1655350 1655543 194 - 3.239 3.543 1.010
ENSG00000174231 E018 2494.524956 0.0359965742 6.987418e-02 2.245486e-01 17 1656392 1656565 174 - 3.211 3.461 0.831
ENSG00000174231 E019 2030.685585 0.0042759085 8.886355e-02 2.616757e-01 17 1656648 1656761 114 - 3.175 3.352 0.591
ENSG00000174231 E020 2363.733592 0.0085690181 7.496728e-01 8.665724e-01 17 1658253 1658381 129 - 3.270 3.406 0.451
ENSG00000174231 E021 3145.918390 0.0110439762 8.011150e-01 8.969452e-01 17 1658526 1658763 238 - 3.414 3.521 0.356
ENSG00000174231 E022 1924.239322 0.0099225082 8.287191e-01 9.130725e-01 17 1659357 1659463 107 - 3.185 3.315 0.432
ENSG00000174231 E023 1528.016374 0.0060827800 9.137089e-01 9.589686e-01 17 1659464 1659548 85 - 3.095 3.210 0.384
ENSG00000174231 E024 50.979793 0.2054660684 1.434101e-01 3.525526e-01 17 1659549 1659840 292 - 1.772 1.654 -0.399
ENSG00000174231 E025 1814.650365 0.0065051731 7.207167e-01 8.486343e-01 17 1659841 1659968 128 - 3.156 3.291 0.448
ENSG00000174231 E026 1099.250291 0.0040970927 9.460381e-01 9.753744e-01 17 1659969 1660001 33 - 2.949 3.068 0.399
ENSG00000174231 E027 1894.600324 0.0045527412 7.553462e-01 8.698653e-01 17 1660432 1660578 147 - 3.178 3.308 0.430
ENSG00000174231 E028 1937.048754 0.0058255897 4.222793e-01 6.453630e-01 17 1660698 1660827 130 - 3.216 3.304 0.295
ENSG00000174231 E029 17.214816 0.0609355115 1.035820e-01 2.881618e-01 17 1660927 1660992 66 - 1.318 1.194 -0.439
ENSG00000174231 E030 2288.699109 0.0117939111 5.521249e-01 7.377858e-01 17 1660993 1661162 170 - 3.289 3.376 0.291
ENSG00000174231 E031 14.412645 0.0381857212 8.324866e-01 9.151938e-01 17 1661163 1661270 108 - 1.124 1.195 0.254
ENSG00000174231 E032 2240.787215 0.0105682072 3.340393e-01 5.726008e-01 17 1661271 1661406 136 - 3.292 3.361 0.231
ENSG00000174231 E033 2414.898213 0.0101314307 1.856011e-01 4.113561e-01 17 1661611 1661790 180 - 3.336 3.388 0.174
ENSG00000174231 E034 2288.616872 0.0087446035 9.857346e-02 2.793172e-01 17 1661906 1662153 248 - 3.319 3.361 0.139
ENSG00000174231 E035 1.446439 0.4697208873 6.760924e-01 8.202318e-01 17 1672941 1673080 140 - 0.262 0.441 1.093
ENSG00000174231 E036 1194.221323 0.0097153526 9.380518e-02 2.708034e-01 17 1673081 1673197 117 - 3.041 3.076 0.119
ENSG00000174231 E037 1532.516305 0.0079939058 4.146337e-02 1.585373e-01 17 1673357 1673567 211 - 3.155 3.182 0.090
ENSG00000174231 E038 1220.728397 0.0056676689 7.552000e-02 2.358887e-01 17 1673746 1673892 147 - 3.041 3.091 0.165
ENSG00000174231 E039 1009.739730 0.0041854937 1.471566e-01 3.582516e-01 17 1674442 1674537 96 - 2.947 3.015 0.225
ENSG00000174231 E040 1111.101623 0.0047212647 2.409986e-02 1.093693e-01 17 1674538 1674643 106 - 3.009 3.045 0.120
ENSG00000174231 E041 804.803891 0.0064868902 5.186917e-04 5.844769e-03 17 1674644 1674680 37 - 2.910 2.881 -0.098
ENSG00000174231 E042 1595.834057 0.0061606402 7.758972e-04 8.080284e-03 17 1675152 1675339 188 - 3.199 3.183 -0.054
ENSG00000174231 E043 10.209708 0.1073125135 1.211871e-01 3.177500e-01 17 1675340 1675530 191 - 1.137 0.963 -0.638
ENSG00000174231 E044 1491.558292 0.0067060926 1.105907e-03 1.071463e-02 17 1675620 1675812 193 - 3.172 3.153 -0.062
ENSG00000174231 E045 1226.797076 0.0083326190 2.049505e-03 1.739396e-02 17 1675928 1676054 127 - 3.091 3.065 -0.088
ENSG00000174231 E046 949.863342 0.0058398081 1.397619e-02 7.425009e-02 17 1676207 1676307 101 - 2.952 2.971 0.063
ENSG00000174231 E047 853.118655 0.0031756483 5.331651e-03 3.634541e-02 17 1676308 1676370 63 - 2.899 2.928 0.096
ENSG00000174231 E048 1377.944975 0.0066546666 2.861616e-03 2.257167e-02 17 1676505 1676711 207 - 3.130 3.123 -0.023
ENSG00000174231 E049 1444.226592 0.0089033876 1.015281e-03 1.002489e-02 17 1676976 1677172 197 - 3.170 3.131 -0.129
ENSG00000174231 E050 4.033338 0.1148990664 2.144341e-01 4.468585e-01 17 1677173 1677271 99 - 0.774 0.632 -0.589
ENSG00000174231 E051 1116.612049 0.0062432568 2.867955e-04 3.597346e-03 17 1677565 1677694 130 - 3.052 3.023 -0.097
ENSG00000174231 E052 8.155111 0.1554502506 1.645914e-01 3.834833e-01 17 1678441 1678517 77 - 1.039 0.883 -0.583
ENSG00000174231 E053 1220.804248 0.0043421336 1.546297e-07 5.485622e-06 17 1678518 1678652 135 - 3.111 3.049 -0.208
ENSG00000174231 E054 1003.542098 0.0072866017 3.547230e-05 6.221867e-04 17 1678762 1678872 111 - 3.027 2.963 -0.213
ENSG00000174231 E055 462.068192 0.0040099436 2.001039e-09 1.102246e-07 17 1678873 1678881 9 - 2.710 2.612 -0.328
ENSG00000174231 E056 1230.883946 0.0044214656 1.102514e-07 4.046514e-06 17 1679017 1679206 190 - 3.117 3.051 -0.219
ENSG00000174231 E057 954.673082 0.0042050148 5.771265e-08 2.268735e-06 17 1679291 1679410 120 - 3.008 2.940 -0.227
ENSG00000174231 E058 1384.184851 0.0079472250 1.092130e-06 3.066106e-05 17 1679609 1679799 191 - 3.188 3.087 -0.335
ENSG00000174231 E059 2.663942 0.4904396745 6.789295e-02 2.203617e-01 17 1680481 1680725 245 - 0.749 0.363 -1.817
ENSG00000174231 E060 1130.715977 0.0080774830 2.834819e-07 9.378873e-06 17 1680726 1680831 106 - 3.110 2.992 -0.393
ENSG00000174231 E061 1112.638494 0.0073952584 6.683697e-08 2.587883e-06 17 1680929 1681054 126 - 3.104 2.984 -0.398
ENSG00000174231 E062 1298.127566 0.0058084562 3.509800e-11 2.731477e-09 17 1681478 1681690 213 - 3.182 3.041 -0.469
ENSG00000174231 E063 1355.559756 0.0061451572 1.034243e-12 1.057512e-10 17 1681820 1682038 219 - 3.215 3.048 -0.555
ENSG00000174231 E064 1226.422760 0.0064709848 8.367248e-13 8.670162e-11 17 1682129 1682293 165 - 3.176 3.001 -0.584
ENSG00000174231 E065 3.090230 0.4083327856 2.604375e-01 4.993991e-01 17 1683021 1683532 512 - 0.712 0.517 -0.860
ENSG00000174231 E066 1188.333616 0.0007867985 1.571720e-36 2.118367e-33 17 1683533 1683701 169 - 3.125 3.020 -0.350
ENSG00000174231 E067 683.410420 0.0111302772 1.998494e-01 4.294991e-01 17 1684472 1684582 111 - 2.805 2.832 0.089
ENSG00000174231 E068 48.756164 0.0007752474 8.315368e-01 9.146937e-01 17 1684583 1684779 197 - 1.607 1.727 0.407
ENSG00000174231 E069 386.557056 1.4634268792 5.703575e-01 7.504918e-01 17 1684780 1684984 205 - 2.448 2.636 0.625