ENSG00000173898

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000528051 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding retained_intron 21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 2.949829 3.9309169 0.0000000 1.24367175 0.0000000 -8.62238751 0.09500000 0.15036667 0.00000000 -0.150366667 3.478234e-10 3.478234e-10 FALSE TRUE
ENST00000530665 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding retained_intron 21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 1.667280 0.9935553 1.6901447 0.50275838 0.9264817 0.76053749 0.09648333 0.04586667 0.13830000 0.092433333 9.076591e-01 3.478234e-10 FALSE FALSE
ENST00000532650 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding retained_intron 21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 3.195214 2.5943987 0.3262670 1.65917299 0.3262670 -2.95327108 0.12586250 0.10860000 0.02406667 -0.084533333 7.172150e-01 3.478234e-10 FALSE FALSE
ENST00000532902 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding retained_intron 21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 1.435308 0.8468685 0.7919676 0.84686854 0.4760234 -0.09552994 0.05217500 0.02946667 0.06370000 0.034233333 6.637532e-01 3.478234e-10 FALSE FALSE
ENST00000533211 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding protein_coding 21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 1.884601 2.2148223 1.0236667 0.09956955 0.1567753 -1.10591897 0.08957083 0.09496667 0.09720000 0.002233333 9.893616e-01 3.478234e-10 FALSE TRUE
MSTRG.5798.15 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding   21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 6.229810 8.1259998 3.6301475 1.80844959 0.4361721 -1.16032276 0.29395833 0.32450000 0.34803333 0.023533333 9.338318e-01 3.478234e-10 FALSE TRUE
MSTRG.5798.16 ENSG00000173898 HEK293_OSMI2_6hA HEK293_TMG_6hB SPTBN2 protein_coding   21.86076 24.62002 10.57921 3.816825 1.689911 -1.217822 1.132162 0.7501167 0.4576138 0.15478488 0.3533234 -0.70090328 0.06511250 0.03406667 0.05680000 0.022733333 9.638416e-01 3.478234e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000173898 E001 0.9160771 0.9838989923 5.744112e-01   11 66655032 66655067 36 - 0.000 0.347 10.926
ENSG00000173898 E002 11.5237963 0.0032172670 3.844799e-01 6.160538e-01 11 66682497 66682634 138 - 1.126 1.037 -0.323
ENSG00000173898 E003 16.7373307 0.0021199004 2.553813e-01 4.940210e-01 11 66682635 66682684 50 - 1.280 1.180 -0.353
ENSG00000173898 E004 13.5385403 0.0038935547 2.462087e-01 4.838316e-01 11 66682685 66682695 11 - 1.203 1.090 -0.405
ENSG00000173898 E005 14.0736595 0.0027826541 1.050100e-01 2.906487e-01 11 66682696 66682723 28 - 1.243 1.090 -0.545
ENSG00000173898 E006 23.0183565 0.0042836988 3.205975e-01 5.602185e-01 11 66682724 66682844 121 - 1.393 1.310 -0.289
ENSG00000173898 E007 44.9084139 0.0038110323 4.107218e-01 6.365532e-01 11 66682845 66683364 520 - 1.581 1.632 0.176
ENSG00000173898 E008 22.0440793 0.0021733803 8.666060e-01 9.341083e-01 11 66683365 66683440 76 - 1.313 1.329 0.056
ENSG00000173898 E009 44.6358121 0.0010490826 5.822799e-01 7.585675e-01 11 66683441 66683636 196 - 1.636 1.604 -0.109
ENSG00000173898 E010 43.2278284 0.0091457853 2.384478e-01 4.748516e-01 11 66683637 66683795 159 - 1.665 1.573 -0.313
ENSG00000173898 E011 106.1831539 0.0502102935 3.737945e-01 6.071748e-01 11 66683796 66684661 866 - 1.927 2.003 0.255
ENSG00000173898 E012 64.5031690 0.0073794087 3.913061e-01 6.214605e-01 11 66684662 66685251 590 - 1.736 1.786 0.169
ENSG00000173898 E013 27.0986436 0.0022860492 4.970309e-01 6.989464e-01 11 66685252 66685310 59 - 1.436 1.385 -0.178
ENSG00000173898 E014 18.1360730 0.0022896703 6.223383e-01 7.854398e-01 11 66685311 66685319 9 - 1.268 1.224 -0.153
ENSG00000173898 E015 161.7727383 0.0003090124 3.430401e-02 1.396915e-01 11 66685320 66685651 332 - 2.117 2.185 0.227
ENSG00000173898 E016 59.5360989 0.0008973369 6.668790e-02 2.176279e-01 11 66685652 66685654 3 - 1.666 1.764 0.332
ENSG00000173898 E017 178.6611938 0.0026261218 9.269048e-04 9.312534e-03 11 66685655 66685870 216 - 2.111 2.240 0.431
ENSG00000173898 E018 168.1150899 0.0017576303 3.175070e-06 7.800528e-05 11 66685871 66686104 234 - 2.050 2.225 0.585
ENSG00000173898 E019 6.1421704 0.0045245581 7.390831e-01 8.598428e-01 11 66686105 66686397 293 - 0.789 0.836 0.184
ENSG00000173898 E020 88.8472152 0.0021211394 7.149131e-07 2.120661e-05 11 66686398 66686440 43 - 1.716 1.964 0.838
ENSG00000173898 E021 1.6285599 0.1151304426 9.535405e-01 9.786839e-01 11 66686441 66686517 77 - 0.407 0.409 0.012
ENSG00000173898 E022 2.1890268 0.0100274010 5.219582e-02 1.848487e-01 11 66686793 66686993 201 - 0.181 0.559 2.346
ENSG00000173898 E023 157.6678916 0.0061150109 7.415377e-06 1.617808e-04 11 66686994 66687167 174 - 1.976 2.207 0.773
ENSG00000173898 E024 191.4911032 0.0018662273 9.626386e-06 2.028265e-04 11 66687427 66687611 185 - 2.118 2.277 0.532
ENSG00000173898 E025 99.7353463 0.0010569405 5.666385e-03 3.806949e-02 11 66687612 66687647 36 - 1.867 1.985 0.397
ENSG00000173898 E026 119.7489275 0.0005691273 8.073093e-02 2.463031e-01 11 66687868 66687918 51 - 1.986 2.052 0.220
ENSG00000173898 E027 121.4003647 0.0099921735 1.354547e-01 3.404872e-01 11 66688004 66688079 76 - 1.973 2.063 0.302
ENSG00000173898 E028 155.9751000 0.0018645294 9.548792e-03 5.617920e-02 11 66688169 66688311 143 - 2.077 2.177 0.335
ENSG00000173898 E029 171.0910427 0.0005303807 1.633170e-04 2.256528e-03 11 66688653 66688820 168 - 2.101 2.224 0.412
ENSG00000173898 E030 99.8098106 0.0005612370 3.640200e-04 4.377968e-03 11 66688821 66688849 29 - 1.849 1.999 0.506
ENSG00000173898 E031 3.6944032 0.3767031947 5.275505e-01 7.202963e-01 11 66688850 66688917 68 - 0.567 0.643 0.333
ENSG00000173898 E032 139.3212387 0.0004292159 1.732312e-03 1.524598e-02 11 66689096 66689180 85 - 2.022 2.132 0.371
ENSG00000173898 E033 145.6941037 0.0005663356 3.030352e-01 5.435915e-01 11 66689805 66689943 139 - 2.096 2.132 0.120
ENSG00000173898 E034 152.1664017 0.0013819528 5.073749e-01 7.059318e-01 11 66690039 66690283 245 - 2.123 2.147 0.080
ENSG00000173898 E035 1.4265137 0.0130831069 2.415600e-03 1.978320e-02 11 66690284 66690358 75 - 0.663 0.147 -3.159
ENSG00000173898 E036 176.1143595 0.0002928386 1.545672e-04 2.153327e-03 11 66691284 66691658 375 - 2.117 2.235 0.396
ENSG00000173898 E037 142.7781447 0.0004819092 7.644391e-02 2.376200e-01 11 66692536 66692740 205 - 2.068 2.130 0.207
ENSG00000173898 E038 124.9162794 0.0003776054 5.054588e-01 7.045988e-01 11 66692970 66693100 131 - 2.070 2.047 -0.077
ENSG00000173898 E039 157.0110636 0.0002871736 1.483260e-01 3.599172e-01 11 66693186 66693446 261 - 2.185 2.141 -0.147
ENSG00000173898 E040 78.2322674 0.0009941783 3.968793e-01 6.258111e-01 11 66693772 66693861 90 - 1.882 1.845 -0.127
ENSG00000173898 E041 124.7373473 0.0003647787 8.463862e-01 9.229574e-01 11 66694139 66694334 196 - 2.060 2.054 -0.020
ENSG00000173898 E042 53.2228383 0.0006776544 7.875211e-01 8.890825e-01 11 66694335 66694363 29 - 1.680 1.696 0.052
ENSG00000173898 E043 69.7673142 0.0005605804 9.240703e-01 9.644431e-01 11 66696277 66696328 52 - 1.802 1.807 0.018
ENSG00000173898 E044 140.5707516 0.0003410906 4.555181e-02 1.689027e-01 11 66696329 66696540 212 - 2.153 2.089 -0.215
ENSG00000173898 E045 0.5705883 0.2569949245 1.000000e+00   11 66696928 66697003 76 - 0.182 0.199 0.160
ENSG00000173898 E046 120.4572840 0.0003845569 2.561003e-04 3.284874e-03 11 66698639 66698785 147 - 2.125 1.999 -0.424
ENSG00000173898 E047 1.4102352 0.0335589780 2.186301e-01 4.517757e-01 11 66698786 66698807 22 - 0.486 0.259 -1.343
ENSG00000173898 E048 95.5197483 0.0004187199 1.017498e-01 2.849258e-01 11 66698992 66699082 91 - 1.986 1.923 -0.213
ENSG00000173898 E049 132.2428698 0.0004508183 1.814803e-01 4.059381e-01 11 66699406 66699608 203 - 2.112 2.067 -0.150
ENSG00000173898 E050 270.7557717 0.0002029717 9.258695e-01 9.650842e-01 11 66700526 66701282 757 - 2.392 2.391 -0.005
ENSG00000173898 E051 93.4966474 0.0009605114 1.050211e-02 6.026762e-02 11 66701584 66701721 138 - 2.004 1.899 -0.353
ENSG00000173898 E052 227.3213679 0.0035476909 5.600013e-01 7.433026e-01 11 66704598 66705468 871 - 2.299 2.317 0.061
ENSG00000173898 E053 77.3121111 0.0067683577 8.974068e-01 9.505176e-01 11 66705684 66705837 154 - 1.844 1.853 0.029
ENSG00000173898 E054 117.3274583 0.0105815478 4.817198e-01 6.882644e-01 11 66707516 66707818 303 - 2.061 2.013 -0.158
ENSG00000173898 E055 87.9895078 0.0079197577 1.510710e-01 3.638539e-01 11 66708141 66708299 159 - 1.965 1.874 -0.307
ENSG00000173898 E056 70.9709327 0.0028561762 4.325218e-03 3.096764e-02 11 66708902 66709019 118 - 1.911 1.765 -0.492
ENSG00000173898 E057 95.2221367 0.0069696086 1.992270e-05 3.808774e-04 11 66710582 66710769 188 - 2.094 1.859 -0.792
ENSG00000173898 E058 71.3328973 0.0005794944 1.928731e-11 1.583098e-09 11 66710917 66711029 113 - 2.002 1.712 -0.978
ENSG00000173898 E059 81.8264629 0.0005260335 9.214653e-14 1.154878e-11 11 66713631 66713746 116 - 2.068 1.767 -1.011
ENSG00000173898 E060 78.8687658 0.0045624318 2.106969e-07 7.225035e-06 11 66714091 66714171 81 - 2.036 1.770 -0.895
ENSG00000173898 E061 83.3300934 0.0141585360 5.120389e-05 8.491796e-04 11 66714316 66714407 92 - 2.067 1.786 -0.944
ENSG00000173898 E062 98.3219724 0.0098830089 1.696643e-04 2.331330e-03 11 66715222 66715395 174 - 2.105 1.878 -0.762
ENSG00000173898 E063 70.2138003 0.0014285704 3.546897e-06 8.579187e-05 11 66715830 66715981 152 - 1.955 1.742 -0.719
ENSG00000173898 E064 0.3447487 0.5614786759 7.386174e-01   11 66718443 66718872 430 - 0.000 0.150 12.201
ENSG00000173898 E065 62.4387554 0.0007122774 9.754754e-07 2.780432e-05 11 66721084 66721262 179 - 1.913 1.687 -0.766
ENSG00000173898 E066 19.9476335 0.0086372413 5.551189e-03 3.747941e-02 11 66721350 66721440 91 - 1.444 1.204 -0.839
ENSG00000173898 E067 6.4459422 0.0505695330 1.604051e-01 3.773946e-01 11 66721441 66721532 92 - 0.988 0.763 -0.863
ENSG00000173898 E068 4.4133482 0.1796098105 6.573227e-01 8.082104e-01 11 66725479 66725625 147 - 0.608 0.725 0.498
ENSG00000173898 E069 1.5725786 0.0121989077 1.505083e-01 3.630271e-01 11 66727304 66727412 109 - 0.554 0.303 -1.353
ENSG00000173898 E070 1.8694764 0.1294382958 6.476988e-01 8.019930e-01 11 66727986 66728160 175 - 0.489 0.411 -0.402
ENSG00000173898 E071 2.9587831 0.0539572980 7.272641e-01 8.525840e-01 11 66728161 66728372 212 - 0.610 0.538 -0.327
ENSG00000173898 E072 0.3336024 0.0244411696 6.010469e-01   11 66728741 66729192 452 - 0.000 0.147 13.069
ENSG00000173898 E073 0.0000000       11 66729193 66729226 34 -      
ENSG00000173898 E074 6.8759299 0.1755719714 2.150796e-02 1.010023e-01 11 66744542 66744670 129 - 0.402 0.961 2.419