ENSG00000173230

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000393667 ENSG00000173230 HEK293_OSMI2_6hA HEK293_TMG_6hB GOLGB1 protein_coding protein_coding 11.55965 11.50137 13.07258 0.5304265 0.2761964 0.1845876 0.5050594 0.0000000 0.9595248 0.0000000 0.48589495 6.599206 0.04444167 0.00000000 0.07500000 0.07500000 2.999472e-01 1.424176e-11 FALSE TRUE
ENST00000494517 ENSG00000173230 HEK293_OSMI2_6hA HEK293_TMG_6hB GOLGB1 protein_coding protein_coding 11.55965 11.50137 13.07258 0.5304265 0.2761964 0.1845876 2.3822316 1.3103495 4.8653255 0.3859332 0.04871068 1.884579 0.19308333 0.11463333 0.37243333 0.25780000 2.103288e-03 1.424176e-11 FALSE TRUE
ENST00000694981 ENSG00000173230 HEK293_OSMI2_6hA HEK293_TMG_6hB GOLGB1 protein_coding retained_intron 11.55965 11.50137 13.07258 0.5304265 0.2761964 0.1845876 0.7496613 1.2188247 0.1784217 0.1549938 0.08921692 -2.705242 0.06989167 0.10563333 0.01356667 -0.09206667 1.593881e-02 1.424176e-11 TRUE TRUE
ENST00000695015 ENSG00000173230 HEK293_OSMI2_6hA HEK293_TMG_6hB GOLGB1 protein_coding nonsense_mediated_decay 11.55965 11.50137 13.07258 0.5304265 0.2761964 0.1845876 0.5009918 0.1614478 1.0411794 0.1614478 0.22141076 2.616167 0.04438750 0.01506667 0.08040000 0.06533333 2.545824e-01 1.424176e-11 TRUE TRUE
ENST00000695039 ENSG00000173230 HEK293_OSMI2_6hA HEK293_TMG_6hB GOLGB1 protein_coding retained_intron 11.55965 11.50137 13.07258 0.5304265 0.2761964 0.1845876 1.3478189 2.3080367 0.9485143 0.5343717 0.33289685 -1.274032 0.11684583 0.19876667 0.07160000 -0.12716667 2.142089e-01 1.424176e-11 FALSE TRUE
ENST00000695118 ENSG00000173230 HEK293_OSMI2_6hA HEK293_TMG_6hB GOLGB1 protein_coding protein_coding 11.55965 11.50137 13.07258 0.5304265 0.2761964 0.1845876 1.7263449 2.4228906 0.0000000 0.5702579 0.00000000 -7.926528 0.15683333 0.20880000 0.00000000 -0.20880000 1.424176e-11 1.424176e-11 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000173230 E001 0.0000000       3 121663199 121663200 2 -      
ENSG00000173230 E002 0.0000000       3 121663201 121663202 2 -      
ENSG00000173230 E003 0.0000000       3 121663203 121663203 1 -      
ENSG00000173230 E004 0.0000000       3 121663204 121663220 17 -      
ENSG00000173230 E005 0.4764247 0.0217681645 8.118725e-01   3 121663221 121663233 13 - 0.180 0.148 -0.335
ENSG00000173230 E006 5.6801975 0.0498614722 5.610614e-04 6.232005e-03 3 121663234 121663253 20 - 0.484 1.069 2.391
ENSG00000173230 E007 14.3117632 0.2219275244 2.589308e-02 1.149545e-01 3 121663254 121663343 90 - 0.917 1.405 1.750
ENSG00000173230 E008 13.7060860 0.2580834555 6.194695e-02 2.071631e-01 3 121663344 121663378 35 - 0.942 1.364 1.514
ENSG00000173230 E009 11.5386510 0.2035782794 2.593941e-02 1.151181e-01 3 121663379 121663389 11 - 0.831 1.316 1.768
ENSG00000173230 E010 12.6032122 0.2045749876 2.387988e-02 1.087120e-01 3 121663390 121663401 12 - 0.860 1.356 1.798
ENSG00000173230 E011 13.6159735 0.2348107160 2.974220e-02 1.265672e-01 3 121663402 121663420 19 - 0.888 1.388 1.803
ENSG00000173230 E012 81.6559812 0.8260090783 1.666739e-01 3.861267e-01 3 121663421 121664097 677 - 1.664 2.128 1.565
ENSG00000173230 E013 13.2460597 0.2265373033 4.952124e-02 1.784696e-01 3 121664098 121664100 3 - 0.929 1.352 1.521
ENSG00000173230 E014 13.8641235 0.2177516528 3.543912e-02 1.427238e-01 3 121664101 121664108 8 - 0.928 1.382 1.627
ENSG00000173230 E015 15.5981702 0.2761909167 5.848686e-02 1.993820e-01 3 121664109 121664135 27 - 0.986 1.423 1.554
ENSG00000173230 E016 26.7647515 0.4998799619 1.654329e-01 3.844856e-01 3 121664136 121664146 11 - 1.256 1.617 1.245
ENSG00000173230 E017 34.2930783 0.5667574420 1.513134e-01 3.642516e-01 3 121664147 121664191 45 - 1.333 1.738 1.387
ENSG00000173230 E018 31.8359612 0.5328650006 1.380930e-01 3.446096e-01 3 121664192 121664206 15 - 1.296 1.710 1.422
ENSG00000173230 E019 168.9293063 1.3560103099 2.881819e-01 5.289208e-01 3 121664207 121664614 408 - 1.997 2.430 1.447
ENSG00000173230 E020 1.8337471 0.0108647759 3.346557e-02 1.373821e-01 3 121664615 121664925 311 - 0.248 0.629 2.081
ENSG00000173230 E021 80.3607459 0.0742097321 1.185318e-02 6.583506e-02 3 121664926 121665031 106 - 1.735 2.075 1.145
ENSG00000173230 E022 11.2943611 0.0302348064 3.742773e-01 6.075754e-01 3 121665032 121667475 2444 - 1.011 1.151 0.507
ENSG00000173230 E023 99.2048575 0.0004176968 5.906513e-13 6.308564e-11 3 121667476 121667610 135 - 1.853 2.143 0.975
ENSG00000173230 E024 0.8289957 0.6139220130 9.558509e-01   3 121667611 121668060 450 - 0.249 0.263 0.101
ENSG00000173230 E025 91.4341683 0.0009076374 4.291426e-06 1.008696e-04 3 121668061 121668158 98 - 1.859 2.070 0.710
ENSG00000173230 E026 1.1024985 0.0504145150 9.095450e-01   3 121668159 121668313 155 - 0.306 0.346 0.248
ENSG00000173230 E027 8.6682451 0.0037481311 1.088170e-01 2.970926e-01 3 121668314 121668508 195 - 0.885 1.092 0.769
ENSG00000173230 E028 1.1831104 0.0829783004 4.218653e-01   3 121668509 121668669 161 - 0.247 0.422 1.099
ENSG00000173230 E029 4.7711062 0.0508352833 3.409663e-02 1.391286e-01 3 121668670 121669196 527 - 0.553 0.926 1.533
ENSG00000173230 E030 11.9044616 0.0026936502 1.738193e-02 8.685494e-02 3 121669197 121669211 15 - 0.976 1.237 0.942
ENSG00000173230 E031 101.0174430 0.0020957569 7.602089e-07 2.239004e-05 3 121669212 121669355 144 - 1.890 2.124 0.784
ENSG00000173230 E032 5.0738371 0.0141403329 8.454321e-01 9.223512e-01 3 121669356 121675037 5682 - 0.768 0.770 0.007
ENSG00000173230 E033 114.3040928 0.0121265758 1.379926e-02 7.353560e-02 3 121676893 121677030 138 - 1.970 2.155 0.621
ENSG00000173230 E034 101.6229653 0.0120380422 1.620097e-02 8.253146e-02 3 121677285 121677450 166 - 1.920 2.103 0.614
ENSG00000173230 E035 0.4054685 0.7024605666 2.563167e-01   3 121680571 121680635 65 - 0.000 0.273 11.295
ENSG00000173230 E036 82.4128472 0.0032052656 5.729064e-03 3.838444e-02 3 121681687 121681834 148 - 1.841 2.002 0.540
ENSG00000173230 E037 55.1509707 0.0007365726 9.541523e-04 9.539445e-03 3 121681835 121681865 31 - 1.652 1.843 0.647
ENSG00000173230 E038 6.3817084 0.0082775231 2.056752e-01 4.366703e-01 3 121681866 121682916 1051 - 0.769 0.960 0.736
ENSG00000173230 E039 2.3995491 0.0289205270 9.487854e-01 9.766075e-01 3 121682917 121682961 45 - 0.520 0.536 0.075
ENSG00000173230 E040 1.5901422 0.0123237562 1.714293e-01 3.924276e-01 3 121682962 121682963 2 - 0.485 0.258 -1.338
ENSG00000173230 E041 2.0658611 0.0122717749 7.503607e-02 2.349002e-01 3 121682964 121683313 350 - 0.307 0.629 1.664
ENSG00000173230 E042 1.4102352 0.0204789503 5.979085e-01 7.688881e-01 3 121690424 121690669 246 - 0.307 0.420 0.668
ENSG00000173230 E043 222.8106037 0.0003428178 1.145725e-06 3.195442e-05 3 121690670 121691332 663 - 2.273 2.425 0.506
ENSG00000173230 E044 317.8113689 0.0022398951 8.823046e-01 9.425046e-01 3 121691333 121692581 1249 - 2.477 2.517 0.132
ENSG00000173230 E045 420.0198726 0.0048294719 2.186802e-04 2.879203e-03 3 121693741 121695595 1855 - 2.648 2.556 -0.305
ENSG00000173230 E046 317.7780898 0.0332074152 6.146041e-04 6.707802e-03 3 121695596 121697455 1860 - 2.570 2.340 -0.767
ENSG00000173230 E047 30.9948992 0.0249345382 3.234483e-02 1.342219e-01 3 121697456 121697562 107 - 1.552 1.382 -0.585
ENSG00000173230 E048 31.3895857 0.0013693417 1.965445e-04 2.636268e-03 3 121697563 121697690 128 - 1.576 1.360 -0.741
ENSG00000173230 E049 42.4855548 0.0099027356 1.698368e-06 4.522848e-05 3 121697691 121697899 209 - 1.729 1.404 -1.112
ENSG00000173230 E050 32.2031146 0.0013391491 3.464731e-09 1.798261e-07 3 121697900 121697967 68 - 1.624 1.247 -1.302
ENSG00000173230 E051 107.7336877 0.0093077236 1.992680e-11 1.632431e-09 3 121697968 121698627 660 - 2.137 1.773 -1.225
ENSG00000173230 E052 29.7067727 0.0014791918 2.155634e-05 4.071584e-04 3 121698628 121698700 73 - 1.564 1.302 -0.903
ENSG00000173230 E053 29.5973107 0.0011973372 6.167608e-05 9.965083e-04 3 121698701 121698784 84 - 1.555 1.312 -0.839
ENSG00000173230 E054 23.6997979 0.0016205141 2.594483e-07 8.680119e-06 3 121698785 121698883 99 - 1.498 1.120 -1.324
ENSG00000173230 E055 19.7820513 0.0035873906 1.739825e-07 6.097035e-06 3 121698884 121698929 46 - 1.437 0.997 -1.563
ENSG00000173230 E056 22.9192275 0.0284511092 2.309929e-05 4.323111e-04 3 121699812 121699885 74 - 1.496 1.047 -1.579
ENSG00000173230 E057 0.0000000       3 121699886 121700118 233 -      
ENSG00000173230 E058 0.1779838 0.0366882651 6.924943e-01   3 121701753 121702480 728 - 0.099 0.000 -11.499
ENSG00000173230 E059 34.8744631 0.0250137515 9.133366e-05 1.385366e-03 3 121702481 121702591 111 - 1.651 1.302 -1.203
ENSG00000173230 E060 20.3937966 0.0099253245 3.354479e-05 5.937749e-04 3 121702592 121702595 4 - 1.427 1.063 -1.283
ENSG00000173230 E061 0.1779838 0.0366882651 6.924943e-01   3 121702596 121703013 418 - 0.099 0.000 -11.499
ENSG00000173230 E062 0.0000000       3 121712201 121714860 2660 -      
ENSG00000173230 E063 32.9333289 0.0114912109 5.054113e-06 1.161441e-04 3 121714861 121714971 111 - 1.625 1.276 -1.204
ENSG00000173230 E064 13.8279799 0.0027507625 1.259292e-04 1.810350e-03 3 121714972 121714976 5 - 1.272 0.919 -1.278
ENSG00000173230 E065 61.3396208 0.0093163936 3.172316e-08 1.325621e-06 3 121716737 121717139 403 - 1.889 1.549 -1.150
ENSG00000173230 E066 29.0634815 0.0283796833 2.643810e-02 1.165909e-01 3 121718388 121718501 114 - 1.532 1.338 -0.668
ENSG00000173230 E067 5.6634325 0.0606150623 5.160788e-03 3.545964e-02 3 121718502 121718848 347 - 0.940 0.484 -1.913
ENSG00000173230 E068 2.6524358 0.0901765331 1.094772e-01 2.982169e-01 3 121718849 121718914 66 - 0.642 0.346 -1.475
ENSG00000173230 E069 3.1812079 0.0087598928 3.348032e-01 5.733827e-01 3 121718915 121719178 264 - 0.662 0.536 -0.560
ENSG00000173230 E070 4.8776579 0.0714394780 2.209875e-02 1.029324e-01 3 121719179 121719645 467 - 0.875 0.478 -1.695
ENSG00000173230 E071 12.0446162 0.0193713017 2.112963e-01 4.433246e-01 3 121719646 121719750 105 - 1.155 1.045 -0.398
ENSG00000173230 E072 4.9008132 0.0059613742 3.818106e-02 1.500723e-01 3 121719751 121719753 3 - 0.854 0.584 -1.115
ENSG00000173230 E073 4.0030716 0.0708135490 4.212034e-01 6.445423e-01 3 121719754 121719768 15 - 0.745 0.627 -0.495
ENSG00000173230 E074 20.6888598 0.1257492603 1.696306e-03 1.499203e-02 3 121719769 121722261 2493 - 1.468 0.938 -1.889
ENSG00000173230 E075 26.6091051 0.0015347008 1.751511e-03 1.537988e-02 3 121722262 121722376 115 - 1.495 1.303 -0.664
ENSG00000173230 E076 14.0408286 0.0026204023 2.667056e-02 1.172718e-01 3 121722377 121722378 2 - 1.228 1.048 -0.645
ENSG00000173230 E077 28.0799786 0.0018952938 8.304640e-05 1.281293e-03 3 121726913 121727041 129 - 1.535 1.285 -0.865
ENSG00000173230 E078 0.0000000       3 121727319 121727341 23 -      
ENSG00000173230 E079 0.0000000       3 121727342 121729187 1846 -      
ENSG00000173230 E080 23.9967748 0.0013825684 9.967014e-04 9.889158e-03 3 121729188 121729336 149 - 1.461 1.247 -0.747
ENSG00000173230 E081 9.3613787 0.0109870670 1.571463e-02 8.077440e-02 3 121729337 121729340 4 - 1.090 0.825 -0.991
ENSG00000173230 E082 30.6063669 0.0064668774 2.957351e-03 2.314407e-02 3 121729865 121730017 153 - 1.558 1.367 -0.658
ENSG00000173230 E083 0.0000000       3 121730018 121730474 457 -      
ENSG00000173230 E084 2.3082346 0.0126820637 3.517949e-02 1.420589e-01 3 121730848 121730875 28 - 0.611 0.258 -1.923
ENSG00000173230 E085 23.8404222 0.0129327353 9.291237e-04 9.330962e-03 3 121730876 121730973 98 - 1.479 1.203 -0.961
ENSG00000173230 E086 3.8456362 0.0062296092 9.123838e-01 9.583341e-01 3 121749010 121749631 622 - 0.662 0.704 0.178
ENSG00000173230 E087 12.0960783 0.4934535857 9.326741e-01 9.684885e-01 3 121749632 121749845 214 - 1.137 1.066 -0.255
ENSG00000173230 E088 0.4764247 0.0217681645 8.118725e-01   3 121749846 121749966 121 - 0.180 0.148 -0.335