ENSG00000173064

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000377560 ENSG00000173064 HEK293_OSMI2_6hA HEK293_TMG_6hB HECTD4 protein_coding protein_coding 10.73794 17.59691 7.322362 1.519076 0.742993 -1.263792 1.1100840 1.080433 1.5416590 0.3053754 0.21949603 0.5089104 0.12709167 0.0593000 0.21506667 0.15576667 0.01337700 0.013377 FALSE TRUE
ENST00000547085 ENSG00000173064 HEK293_OSMI2_6hA HEK293_TMG_6hB HECTD4 protein_coding retained_intron 10.73794 17.59691 7.322362 1.519076 0.742993 -1.263792 0.7348756 1.138592 0.5461705 0.3901664 0.02879087 -1.0462679 0.06954167 0.0643000 0.07526667 0.01096667 0.87977325 0.013377 FALSE TRUE
ENST00000549141 ENSG00000173064 HEK293_OSMI2_6hA HEK293_TMG_6hB HECTD4 protein_coding processed_transcript 10.73794 17.59691 7.322362 1.519076 0.742993 -1.263792 2.5446845 4.108276 0.3871183 0.8712573 0.38711833 -3.3743996 0.19993333 0.2286000 0.04413333 -0.18446667 0.20123008 0.013377   FALSE
ENST00000651701 ENSG00000173064 HEK293_OSMI2_6hA HEK293_TMG_6hB HECTD4 protein_coding nonsense_mediated_decay 10.73794 17.59691 7.322362 1.519076 0.742993 -1.263792 2.1681707 4.527622 0.6979210 0.2975000 0.18636395 -2.6802762 0.17898750 0.2619000 0.09270000 -0.16920000 0.01675361 0.013377 TRUE TRUE
ENST00000682272 ENSG00000173064 HEK293_OSMI2_6hA HEK293_TMG_6hB HECTD4 protein_coding protein_coding 10.73794 17.59691 7.322362 1.519076 0.742993 -1.263792 1.3008949 1.893259 1.5844657 0.1506374 0.34531783 -0.2553987 0.14451250 0.1077333 0.22080000 0.11306667 0.29488666 0.013377 FALSE TRUE
MSTRG.8049.11 ENSG00000173064 HEK293_OSMI2_6hA HEK293_TMG_6hB HECTD4 protein_coding   10.73794 17.59691 7.322362 1.519076 0.742993 -1.263792 1.1934280 2.464119 1.1966868 0.2413406 0.10250355 -1.0358638 0.11646667 0.1418333 0.16670000 0.02486667 0.86890638 0.013377 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000173064 E001 0.0000000       12 112160188 112160189 2 -      
ENSG00000173064 E002 0.0000000       12 112160190 112160194 5 -      
ENSG00000173064 E003 0.4458772 0.0217681645 1.000000e+00   12 112160195 112160207 13 - 0.155 0.172 0.176
ENSG00000173064 E004 3.9421619 0.0069228069 1.742863e-01 3.962330e-01 12 112160208 112160262 55 - 0.498 0.767 1.174
ENSG00000173064 E005 10.0758265 0.0185025611 2.571938e-01 4.959634e-01 12 112160263 112160321 59 - 0.895 1.093 0.732
ENSG00000173064 E006 41.3195516 0.3682165453 1.843396e-01 4.096240e-01 12 112160322 112160467 146 - 1.377 1.698 1.098
ENSG00000173064 E007 29.4727459 0.2649926346 1.753022e-01 3.975720e-01 12 112160468 112160469 2 - 1.247 1.553 1.061
ENSG00000173064 E008 35.3366070 0.3408515081 2.291128e-01 4.640828e-01 12 112160470 112160484 15 - 1.345 1.623 0.956
ENSG00000173064 E009 98.2439769 0.6562968979 2.293972e-01 4.644311e-01 12 112160485 112160644 160 - 1.723 2.073 1.177
ENSG00000173064 E010 126.0548440 0.6466062800 1.283148e-01 3.291463e-01 12 112160645 112160861 217 - 1.718 2.204 1.635
ENSG00000173064 E011 93.1447964 0.5675670828 1.347541e-01 3.393087e-01 12 112160862 112160973 112 - 1.619 2.068 1.514
ENSG00000173064 E012 388.3214010 1.3724015795 3.296392e-01 5.685923e-01 12 112160974 112162103 1130 - 2.273 2.677 1.347
ENSG00000173064 E013 85.8770658 0.5981692943 2.000983e-01 4.298187e-01 12 112162104 112162213 110 - 1.651 2.019 1.240
ENSG00000173064 E014 128.8330121 0.9871291630 3.113916e-01 5.518142e-01 12 112162214 112162523 310 - 1.838 2.190 1.184
ENSG00000173064 E015 0.9214940 0.0248848495 3.934912e-01   12 112162769 112163041 273 - 0.155 0.345 1.497
ENSG00000173064 E016 74.5654877 0.0267668182 1.415953e-02 7.498248e-02 12 112163042 112163257 216 - 1.666 1.940 0.927
ENSG00000173064 E017 25.0275407 0.0070777827 2.940500e-01 5.346580e-01 12 112163258 112163264 7 - 1.298 1.452 0.533
ENSG00000173064 E018 0.1723744 0.0335672766 1.000000e+00   12 112163265 112163321 57 - 0.000 0.094 12.199
ENSG00000173064 E019 74.8112874 0.0004849645 3.403165e-02 1.389436e-01 12 112163542 112163737 196 - 1.754 1.917 0.549
ENSG00000173064 E020 79.3383963 0.0039220262 3.260644e-02 1.349842e-01 12 112164109 112164275 167 - 1.765 1.948 0.618
ENSG00000173064 E021 5.5546374 0.2742110163 9.234540e-01 9.640487e-01 12 112166181 112167316 1136 - 0.692 0.845 0.615
ENSG00000173064 E022 93.2679060 0.0014470740 8.103927e-03 4.980577e-02 12 112167317 112167538 222 - 1.832 2.017 0.620
ENSG00000173064 E023 53.8826743 0.0057547827 1.281664e-03 1.202320e-02 12 112167814 112167917 104 - 1.522 1.799 0.942
ENSG00000173064 E024 21.8420313 0.0214141609 6.219723e-01 7.851282e-01 12 112168633 112168806 174 - 1.333 1.346 0.048
ENSG00000173064 E025 66.6270846 0.0006444589 4.634586e-04 5.340763e-03 12 112169503 112169658 156 - 1.647 1.886 0.806
ENSG00000173064 E026 23.7011929 0.0702863126 9.759927e-01 9.897962e-01 12 112169659 112170185 527 - 1.300 1.411 0.388
ENSG00000173064 E027 66.7217084 0.0005624598 9.004052e-03 5.383948e-02 12 112170333 112170452 120 - 1.683 1.876 0.651
ENSG00000173064 E028 8.6790008 0.0076233144 3.722072e-04 4.460157e-03 12 112170740 112171116 377 - 0.553 1.108 2.200
ENSG00000173064 E029 82.1897450 0.0008470658 1.512434e-05 3.003697e-04 12 112171117 112171263 147 - 1.720 1.984 0.888
ENSG00000173064 E030 8.1913729 0.0136406740 7.393127e-02 2.326249e-01 12 112171264 112171347 84 - 0.723 1.022 1.149
ENSG00000173064 E031 87.7932320 0.0069760977 3.738828e-02 1.479803e-01 12 112172671 112172861 191 - 1.801 1.994 0.650
ENSG00000173064 E032 82.1535478 0.0064943787 2.826748e-01 5.231117e-01 12 112175736 112175859 124 - 1.816 1.945 0.434
ENSG00000173064 E033 84.3329315 0.0008224365 8.307887e-01 9.142320e-01 12 112176596 112176699 104 - 1.862 1.939 0.259
ENSG00000173064 E034 21.4778029 0.0019180371 3.017943e-01 5.423508e-01 12 112176700 112176702 3 - 1.239 1.389 0.524
ENSG00000173064 E035 101.8259328 0.0055347768 3.789006e-01 6.113293e-01 12 112178931 112179082 152 - 1.918 2.029 0.372
ENSG00000173064 E036 102.3836097 0.0219624582 6.528809e-01 8.053269e-01 12 112179174 112179397 224 - 1.924 2.028 0.347
ENSG00000173064 E037 79.2406714 0.0111953257 6.645121e-01 8.127332e-01 12 112183059 112183266 208 - 1.860 1.897 0.122
ENSG00000173064 E038 274.7275104 0.0041113865 2.840597e-01 5.245516e-01 12 112184187 112185493 1307 - 2.351 2.457 0.356
ENSG00000173064 E039 80.6932627 0.0033872611 7.589389e-01 8.719070e-01 12 112190786 112190965 180 - 1.838 1.921 0.279
ENSG00000173064 E040 82.4252365 0.0148594774 2.966499e-01 5.371530e-01 12 112192560 112192765 206 - 1.807 1.946 0.467
ENSG00000173064 E041 59.2206345 0.0077188816 1.415872e-01 3.498489e-01 12 112193061 112193191 131 - 1.652 1.815 0.552
ENSG00000173064 E042 73.9960536 0.0005769270 4.479339e-01 6.641911e-01 12 112193469 112193674 206 - 1.795 1.897 0.345
ENSG00000173064 E043 48.1993875 0.0008638730 7.543710e-01 8.693231e-01 12 112194885 112194996 112 - 1.647 1.698 0.174
ENSG00000173064 E044 30.1551476 0.0016835966 6.516482e-01 8.045662e-01 12 112194997 112195066 70 - 1.420 1.518 0.336
ENSG00000173064 E045 49.4860249 0.0008267758 4.925324e-01 6.956915e-01 12 112200638 112200798 161 - 1.621 1.725 0.354
ENSG00000173064 E046 1.2746853 0.0135317307 7.712363e-01   12 112201127 112201438 312 - 0.359 0.345 -0.087
ENSG00000173064 E047 14.0088425 0.0042569601 9.490900e-01 9.766487e-01 12 112202963 112203635 673 - 1.115 1.172 0.203
ENSG00000173064 E048 62.0641616 0.0006969819 8.935384e-01 9.484553e-01 12 112203636 112203772 137 - 1.738 1.812 0.253
ENSG00000173064 E049 69.9901118 0.0015258783 3.270388e-01 5.661438e-01 12 112204486 112204623 138 - 1.821 1.842 0.071
ENSG00000173064 E050 63.4140269 0.0021543275 3.777669e-01 6.103691e-01 12 112207874 112208000 127 - 1.777 1.797 0.069
ENSG00000173064 E051 58.2562682 0.0009275571 2.015582e-01 4.316005e-01 12 112208494 112208630 137 - 1.754 1.759 0.017
ENSG00000173064 E052 70.3385337 0.0005983719 3.654649e-01 6.003109e-01 12 112210015 112210252 238 - 1.824 1.852 0.096
ENSG00000173064 E053 61.6892197 0.0171577025 4.284976e-01 6.499008e-01 12 112212487 112212650 164 - 1.774 1.784 0.033
ENSG00000173064 E054 41.2327954 0.0017341289 1.238484e-01 3.218163e-01 12 112216292 112216371 80 - 1.626 1.604 -0.073
ENSG00000173064 E055 38.0705451 0.0030307071 5.349609e-03 3.644150e-02 12 112216773 112216820 48 - 1.639 1.531 -0.365
ENSG00000173064 E056 51.4515064 0.0008537822 1.605579e-02 8.201661e-02 12 112216821 112216921 101 - 1.741 1.686 -0.187
ENSG00000173064 E057 56.8498517 0.0006864858 2.589814e-01 4.978525e-01 12 112217034 112217195 162 - 1.738 1.750 0.042
ENSG00000173064 E058 42.6973141 0.0093523255 8.197397e-01 9.079326e-01 12 112219386 112219489 104 - 1.592 1.635 0.146
ENSG00000173064 E059 0.1723744 0.0335672766 1.000000e+00   12 112219490 112219580 91 - 0.000 0.094 12.199
ENSG00000173064 E060 0.9927399 0.4247335970 1.976419e-01   12 112226454 112226642 189 - 0.000 0.393 14.799
ENSG00000173064 E061 49.9271303 0.0016167208 3.772466e-01 6.100647e-01 12 112226643 112226758 116 - 1.679 1.697 0.060
ENSG00000173064 E062 1.6813529 0.2460181222 2.306139e-02 1.061515e-01 12 112226759 112226820 62 - 0.653 0.173 -2.834
ENSG00000173064 E063 62.6504205 0.0015649121 1.064504e-01 2.930862e-01 12 112228089 112228258 170 - 1.792 1.780 -0.042
ENSG00000173064 E064 63.2243461 0.0006316832 7.407048e-02 2.328774e-01 12 112228647 112228804 158 - 1.801 1.786 -0.051
ENSG00000173064 E065 25.2108089 0.0017283622 1.773230e-01 4.002071e-01 12 112228805 112228811 7 - 1.421 1.389 -0.108
ENSG00000173064 E066 60.9127497 0.0068143269 1.615512e-01 3.790541e-01 12 112229698 112229880 183 - 1.784 1.765 -0.064
ENSG00000173064 E067 50.6654313 0.0009720362 2.038560e-03 1.731925e-02 12 112230687 112230822 136 - 1.751 1.659 -0.312
ENSG00000173064 E068 0.4952057 0.2113001948 2.949936e-01   12 112230823 112231463 641 - 0.270 0.095 -1.820
ENSG00000173064 E069 57.1556816 0.0008590553 7.751300e-03 4.813857e-02 12 112231513 112231715 203 - 1.789 1.727 -0.209
ENSG00000173064 E070 33.3630190 0.0011432318 2.685164e-01 5.081982e-01 12 112233004 112233085 82 - 1.527 1.524 -0.008
ENSG00000173064 E071 52.6572290 0.0008451144 5.497101e-02 1.912706e-01 12 112235077 112235266 190 - 1.731 1.701 -0.102
ENSG00000173064 E072 67.6567925 0.0022149452 8.049902e-03 4.953469e-02 12 112235504 112235784 281 - 1.857 1.796 -0.206
ENSG00000173064 E073 45.4197939 0.0107494317 1.691210e-02 8.512482e-02 12 112236945 112237098 154 - 1.714 1.613 -0.342
ENSG00000173064 E074 47.7497740 0.0012131169 1.644160e-02 8.343528e-02 12 112239052 112239236 185 - 1.713 1.654 -0.202
ENSG00000173064 E075 39.4291251 0.0109548932 1.092270e-01 2.978220e-01 12 112239881 112240027 147 - 1.626 1.579 -0.159
ENSG00000173064 E076 41.2105818 0.0051664847 7.905186e-03 4.888153e-02 12 112243353 112243519 167 - 1.679 1.580 -0.337
ENSG00000173064 E077 32.9764462 0.0253048891 3.943903e-02 1.533205e-01 12 112243620 112243761 142 - 1.591 1.469 -0.417
ENSG00000173064 E078 26.8849495 0.0127761667 1.664339e-03 1.477486e-02 12 112243874 112244009 136 - 1.544 1.345 -0.685
ENSG00000173064 E079 39.1230749 0.0010649093 1.815393e-05 3.518953e-04 12 112246901 112247076 176 - 1.691 1.512 -0.609
ENSG00000173064 E080 27.4495554 0.0083866025 1.986344e-03 1.697584e-02 12 112247462 112247550 89 - 1.539 1.363 -0.606
ENSG00000173064 E081 28.8660205 0.0132384009 1.529311e-03 1.381228e-02 12 112248067 112248171 105 - 1.573 1.371 -0.697
ENSG00000173064 E082 45.7659460 0.0010671490 1.403419e-06 3.815768e-05 12 112248320 112248512 193 - 1.767 1.578 -0.642
ENSG00000173064 E083 0.6897577 0.0715475409 9.482349e-02   12 112249557 112250143 587 - 0.361 0.094 -2.414
ENSG00000173064 E084 42.3321813 0.0021742160 7.728799e-07 2.270809e-05 12 112250144 112250377 234 - 1.751 1.539 -0.722
ENSG00000173064 E085 33.1294922 0.0257060459 2.929617e-03 2.297964e-02 12 112250971 112251134 164 - 1.644 1.437 -0.708
ENSG00000173064 E086 27.8531539 0.0650842304 7.765216e-02 2.401134e-01 12 112252424 112252528 105 - 1.536 1.389 -0.506
ENSG00000173064 E087 0.0000000       12 112252529 112252558 30 -      
ENSG00000173064 E088 28.6978046 0.0036932819 2.840399e-04 3.567262e-03 12 112254043 112254162 120 - 1.574 1.391 -0.627
ENSG00000173064 E089 28.3877150 0.0013346067 1.326491e-04 1.893651e-03 12 112256320 112256518 199 - 1.569 1.385 -0.633
ENSG00000173064 E090 0.0000000       12 112258380 112258495 116 -      
ENSG00000173064 E091 18.8936481 0.2718726594 5.965936e-01 7.680384e-01 12 112258496 112258596 101 - 1.211 1.319 0.377
ENSG00000173064 E092 24.6739180 0.0016947769 5.893479e-01 7.632495e-01 12 112259112 112259265 154 - 1.383 1.410 0.093
ENSG00000173064 E093 29.8664936 0.0087733509 2.462414e-02 1.110601e-01 12 112261305 112261429 125 - 1.539 1.432 -0.365
ENSG00000173064 E094 0.9090601 0.5118857675 5.036768e-01   12 112261430 112262136 707 - 0.369 0.177 -1.408
ENSG00000173064 E095 8.0496519 0.0040767737 4.244874e-01 6.468980e-01 12 112264084 112264089 6 - 0.962 0.930 -0.120
ENSG00000173064 E096 37.4651715 0.0010763535 1.536889e-06 4.133657e-05 12 112264090 112264212 123 - 1.691 1.478 -0.725
ENSG00000173064 E097 32.9449458 0.0013410596 2.457415e-05 4.550491e-04 12 112265175 112265295 121 - 1.630 1.434 -0.669
ENSG00000173064 E098 23.5220184 0.0018736507 1.567569e-05 3.098339e-04 12 112265878 112265932 55 - 1.521 1.277 -0.844
ENSG00000173064 E099 24.2771204 0.0200051852 1.259125e-03 1.185611e-02 12 112265933 112265983 51 - 1.534 1.289 -0.846
ENSG00000173064 E100 26.7515723 0.0118609032 1.672294e-05 3.280892e-04 12 112266912 112266982 71 - 1.596 1.307 -0.999
ENSG00000173064 E101 31.7837535 0.0011324259 3.904298e-10 2.442382e-08 12 112269704 112269849 146 - 1.679 1.358 -1.101
ENSG00000173064 E102 43.7900985 0.0022714974 4.856900e-14 6.413790e-12 12 112270227 112270459 233 - 1.832 1.477 -1.206
ENSG00000173064 E103 32.1786864 0.0011407131 3.174955e-08 1.326397e-06 12 112273655 112273795 141 - 1.663 1.389 -0.940
ENSG00000173064 E104 21.4887474 0.0152791915 1.203668e-02 6.659843e-02 12 112274847 112274960 114 - 1.436 1.273 -0.564
ENSG00000173064 E105 24.2249196 0.0078479703 8.903690e-04 9.014794e-03 12 112279228 112279386 159 - 1.505 1.307 -0.683
ENSG00000173064 E106 31.4393078 0.0091636404 9.842890e-07 2.801322e-05 12 112283110 112283302 193 - 1.665 1.364 -1.031
ENSG00000173064 E107 31.8595229 0.0276937109 8.633677e-05 1.321732e-03 12 112306064 112306234 171 - 1.680 1.356 -1.109
ENSG00000173064 E108 33.4908484 0.0062112407 4.897970e-07 1.520358e-05 12 112308753 112308891 139 - 1.684 1.404 -0.957
ENSG00000173064 E109 22.0154537 0.0093387289 1.249120e-03 1.178366e-02 12 112309561 112309669 109 - 1.474 1.273 -0.697
ENSG00000173064 E110 20.3894172 0.0321127350 1.372875e-02 7.327601e-02 12 112313017 112313147 131 - 1.436 1.237 -0.693
ENSG00000173064 E111 20.2676027 0.0168313522 1.792767e-03 1.565231e-02 12 112314457 112314546 90 - 1.448 1.215 -0.814
ENSG00000173064 E112 35.5983113 0.0053716341 1.441022e-07 5.150887e-06 12 112319225 112319564 340 - 1.713 1.432 -0.960
ENSG00000173064 E113 20.5659440 0.0215932697 2.677305e-04 3.403204e-03 12 112319565 112319742 178 - 1.487 1.187 -1.047
ENSG00000173064 E114 15.0076153 0.0199110517 1.605963e-01 3.776613e-01 12 112381952 112382439 488 - 1.240 1.154 -0.305