ENSG00000169710

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000306749 ENSG00000169710 HEK293_OSMI2_6hA HEK293_TMG_6hB FASN protein_coding protein_coding 193.2808 337.8934 118.4185 66.98853 2.759196 -1.512594 110.774866 219.43640 52.612774 50.382759 2.0829988 -2.06010940 0.54743333 0.6386000 0.4444667 -0.1941333 1.251853e-02 1.179387e-51 FALSE TRUE
ENST00000580382 ENSG00000169710 HEK293_OSMI2_6hA HEK293_TMG_6hB FASN protein_coding nonsense_mediated_decay 193.2808 337.8934 118.4185 66.98853 2.759196 -1.512594 34.043599 63.58135 1.271183 20.182057 0.9413047 -5.63328248 0.12517083 0.1783333 0.0107000 -0.1676333 9.550696e-02 1.179387e-51 FALSE TRUE
MSTRG.15331.12 ENSG00000169710 HEK293_OSMI2_6hA HEK293_TMG_6hB FASN protein_coding   193.2808 337.8934 118.4185 66.98853 2.759196 -1.512594 3.038614 0.00000 10.446676 0.000000 0.8515786 10.03020860 0.02534167 0.0000000 0.0883000 0.0883000 1.179387e-51 1.179387e-51 TRUE TRUE
MSTRG.15331.4 ENSG00000169710 HEK293_OSMI2_6hA HEK293_TMG_6hB FASN protein_coding   193.2808 337.8934 118.4185 66.98853 2.759196 -1.512594 15.023995 22.16226 22.948475 2.292359 3.8368478 0.05027076 0.11233333 0.0692000 0.1951667 0.1259667 3.063705e-02 1.179387e-51 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000169710 E001 34.367448 1.566666e-02 1.020575e-01 2.854600e-01 17 82078338 82078339 2 - 1.330 1.513 0.632
ENSG00000169710 E002 797.459092 5.484258e-03 5.242441e-11 3.927160e-09 17 82078340 82078534 195 - 2.588 2.881 0.977
ENSG00000169710 E003 2200.745752 1.586002e-03 9.279521e-25 4.621338e-22 17 82078535 82078996 462 - 3.071 3.316 0.813
ENSG00000169710 E004 306.274334 2.252177e-03 1.241860e-01 3.223533e-01 17 82078997 82079006 10 - 2.364 2.432 0.227
ENSG00000169710 E005 749.068029 1.408220e-03 1.358755e-07 4.898067e-06 17 82079007 82079167 161 - 2.685 2.834 0.495
ENSG00000169710 E006 900.264790 1.008454e-03 3.162120e-09 1.656387e-07 17 82079168 82079221 54 - 2.767 2.913 0.485
ENSG00000169710 E007 1051.300260 4.911777e-04 2.085570e-11 1.698694e-09 17 82079222 82079280 59 - 2.845 2.979 0.446
ENSG00000169710 E008 7.790416 1.997773e-02 8.053391e-01 8.993490e-01 17 82079281 82079299 19 - 0.901 0.872 -0.110
ENSG00000169710 E009 2999.899904 1.371086e-04 9.276145e-14 1.160872e-11 17 82079357 82079608 252 - 3.338 3.426 0.293
ENSG00000169710 E010 76.284931 6.858721e-02 8.397012e-02 2.527303e-01 17 82079609 82079929 321 - 1.978 1.753 -0.760
ENSG00000169710 E011 2141.015243 1.694306e-04 1.410720e-06 3.833777e-05 17 82080140 82080238 99 - 3.207 3.277 0.232
ENSG00000169710 E012 2348.510028 6.404607e-04 4.260969e-05 7.260791e-04 17 82080370 82080535 166 - 3.240 3.316 0.252
ENSG00000169710 E013 1377.150196 7.053194e-04 3.497634e-05 6.150758e-04 17 82080536 82080590 55 - 3.000 3.087 0.289
ENSG00000169710 E014 53.070331 5.363908e-02 1.486670e-01 3.603700e-01 17 82080591 82080691 101 - 1.791 1.612 -0.606
ENSG00000169710 E015 2441.664344 1.339962e-03 4.487915e-06 1.048495e-04 17 82080692 82080922 231 - 3.232 3.338 0.351
ENSG00000169710 E016 2194.045787 1.117875e-03 2.923058e-05 5.276387e-04 17 82081164 82081352 189 - 3.194 3.289 0.315
ENSG00000169710 E017 3004.980244 4.362792e-04 3.834267e-05 6.647092e-04 17 82081601 82081843 243 - 3.353 3.421 0.226
ENSG00000169710 E018 2410.557681 1.925856e-03 2.015860e-02 9.644177e-02 17 82082009 82082160 152 - 3.254 3.324 0.233
ENSG00000169710 E019 1918.170245 1.050675e-03 2.114171e-03 1.783669e-02 17 82082323 82082414 92 - 3.153 3.226 0.245
ENSG00000169710 E020 2323.664831 9.428516e-04 2.140771e-05 4.050269e-04 17 82082527 82082678 152 - 3.222 3.313 0.301
ENSG00000169710 E021 2595.346820 4.339481e-04 5.597827e-03 3.772081e-02 17 82082914 82083115 202 - 3.303 3.353 0.167
ENSG00000169710 E022 2795.154276 3.313613e-04 6.314653e-01 7.913365e-01 17 82083202 82083425 224 - 3.369 3.376 0.023
ENSG00000169710 E023 2049.855100 7.823167e-04 2.277351e-01 4.626598e-01 17 82083517 82083639 123 - 3.246 3.237 -0.030
ENSG00000169710 E024 1745.169275 7.728361e-05 3.147686e-03 2.428887e-02 17 82083772 82083891 120 - 3.134 3.184 0.165
ENSG00000169710 E025 1734.999409 4.117218e-04 3.414184e-05 6.024517e-04 17 82083975 82084153 179 - 3.109 3.184 0.250
ENSG00000169710 E026 1764.026439 1.214246e-04 3.042703e-02 1.286271e-01 17 82084234 82084367 134 - 3.146 3.187 0.139
ENSG00000169710 E027 1051.531108 4.383624e-04 4.296415e-03 3.081599e-02 17 82084368 82084384 17 - 2.976 2.945 -0.101
ENSG00000169710 E028 2308.196788 4.901361e-04 4.137079e-01 6.387760e-01 17 82084513 82084716 204 - 3.274 3.297 0.079
ENSG00000169710 E029 1726.934529 5.746743e-04 7.560727e-03 4.731319e-02 17 82084799 82084953 155 - 3.121 3.178 0.190
ENSG00000169710 E030 1606.666761 3.815170e-04 1.155564e-01 3.084101e-01 17 82085035 82085156 122 - 3.105 3.143 0.124
ENSG00000169710 E031 28.561699 1.343570e-01 1.386439e-01 3.454546e-01 17 82085158 82085237 80 - 1.578 1.327 -0.863
ENSG00000169710 E032 1683.903476 5.702969e-05 3.380517e-03 2.564044e-02 17 82085238 82085402 165 - 3.119 3.169 0.165
ENSG00000169710 E033 1552.793592 1.921393e-03 2.974397e-04 3.704320e-03 17 82085482 82085664 183 - 3.041 3.140 0.326
ENSG00000169710 E034 1625.564635 1.699737e-03 1.057394e-05 2.201961e-04 17 82085665 82085871 207 - 3.050 3.162 0.374
ENSG00000169710 E035 564.085857 2.363920e-04 9.717856e-03 5.689173e-02 17 82086254 82086259 6 - 2.630 2.697 0.223
ENSG00000169710 E036 2002.259971 1.051754e-03 3.024756e-01 5.430634e-01 17 82086260 82086558 299 - 3.207 3.236 0.096
ENSG00000169710 E037 1732.690209 9.715123e-04 2.310786e-02 1.062876e-01 17 82087050 82087253 204 - 3.191 3.159 -0.108
ENSG00000169710 E038 1676.853788 5.638343e-04 2.691539e-08 1.146726e-06 17 82087325 82087504 180 - 3.207 3.134 -0.243
ENSG00000169710 E039 1461.351068 4.193749e-04 8.714859e-07 2.519979e-05 17 82087685 82087861 177 - 3.138 3.079 -0.196
ENSG00000169710 E040 519.598745 1.873850e-03 1.359485e-02 7.275678e-02 17 82087954 82087956 3 - 2.690 2.630 -0.198
ENSG00000169710 E041 908.069873 4.810371e-04 2.070503e-03 1.753798e-02 17 82087957 82088034 78 - 2.918 2.879 -0.132
ENSG00000169710 E042 1761.620673 1.374160e-04 2.539751e-13 2.924123e-11 17 82088116 82088307 192 - 3.225 3.160 -0.217
ENSG00000169710 E043 1717.150490 7.241232e-05 9.050113e-24 4.023344e-21 17 82088390 82088562 173 - 3.231 3.144 -0.289
ENSG00000169710 E044 1141.691446 3.762116e-04 8.598259e-06 1.840643e-04 17 82088761 82088876 116 - 3.029 2.975 -0.179
ENSG00000169710 E045 1381.761975 3.140223e-04 1.272836e-13 1.552850e-11 17 82088969 82089172 204 - 3.136 3.050 -0.286
ENSG00000169710 E046 1059.889387 4.702503e-04 3.229852e-10 2.055089e-08 17 82089250 82089384 135 - 3.021 2.932 -0.296
ENSG00000169710 E047 10.204221 1.062366e-01 2.926564e-02 1.251726e-01 17 82089385 82089401 17 - 1.255 0.849 -1.486
ENSG00000169710 E048 893.268620 4.634284e-04 9.351850e-08 3.494300e-06 17 82089632 82089726 95 - 2.937 2.860 -0.256
ENSG00000169710 E049 1102.884179 7.758235e-05 4.229424e-07 1.338028e-05 17 82090375 82090560 186 - 3.009 2.963 -0.156
ENSG00000169710 E050 372.752459 6.549660e-04 2.563261e-02 1.141709e-01 17 82090561 82090564 4 - 2.530 2.492 -0.128
ENSG00000169710 E051 1233.757245 1.048593e-04 2.432530e-07 8.193168e-06 17 82090882 82091069 188 - 3.059 3.012 -0.157
ENSG00000169710 E052 1634.660137 8.825027e-04 1.102627e-04 1.621785e-03 17 82091222 82091684 463 - 3.185 3.127 -0.195
ENSG00000169710 E053 870.931958 1.473557e-04 1.693468e-16 3.143057e-14 17 82092455 82092589 135 - 2.948 2.845 -0.344
ENSG00000169710 E054 927.281011 1.063563e-04 2.877757e-25 1.503721e-22 17 82092697 82092812 116 - 2.991 2.866 -0.417
ENSG00000169710 E055 1054.839074 1.884672e-04 1.874387e-33 2.040475e-30 17 82092897 82093019 123 - 3.063 2.914 -0.495
ENSG00000169710 E056 1421.037931 2.264278e-04 2.409312e-37 3.467428e-34 17 82093219 82093419 201 - 3.190 3.044 -0.486
ENSG00000169710 E057 511.993297 2.071190e-03 1.025527e-12 1.050410e-10 17 82093598 82093600 3 - 2.776 2.587 -0.629
ENSG00000169710 E058 1400.861930 9.023751e-04 1.159497e-31 1.064374e-28 17 82093601 82093771 171 - 3.218 3.020 -0.659
ENSG00000169710 E059 25.041280 1.151599e-01 5.516418e-02 1.916952e-01 17 82094104 82094187 84 - 1.572 1.244 -1.134
ENSG00000169710 E060 1241.513508 5.883796e-04 5.988079e-38 8.842726e-35 17 82095320 82095472 153 - 3.164 2.969 -0.648
ENSG00000169710 E061 824.284073 2.882873e-04 8.939999e-18 1.979423e-15 17 82096319 82096389 71 - 2.937 2.815 -0.406
ENSG00000169710 E062 480.444788 5.899567e-04 3.365463e-02 1.379382e-01 17 82096390 82096402 13 - 2.636 2.603 -0.107
ENSG00000169710 E063 432.108681 2.954008e-04 2.034754e-02 9.711042e-02 17 82096403 82096414 12 - 2.591 2.559 -0.109
ENSG00000169710 E064 503.744935 4.136540e-04 3.146444e-01 5.548223e-01 17 82096415 82096447 33 - 2.637 2.631 -0.019
ENSG00000169710 E065 312.140036 4.269359e-04 4.269266e-01 6.486861e-01 17 82096448 82096452 5 - 2.429 2.424 -0.014
ENSG00000169710 E066 4.856127 2.631911e-01 1.880057e-02 9.173833e-02 17 82096787 82096802 16 - 1.057 0.504 -2.245
ENSG00000169710 E067 6.193069 2.998497e-01 5.729743e-02 1.966974e-01 17 82096803 82096876 74 - 1.083 0.648 -1.688
ENSG00000169710 E068 5.407461 4.230430e-01 2.711697e-01 5.111593e-01 17 82097258 82097490 233 - 0.910 0.675 -0.936
ENSG00000169710 E069 1.504326 2.399040e-01 4.427885e-01 6.605904e-01 17 82097491 82097527 37 - 0.200 0.389 1.304
ENSG00000169710 E070 476.843689 6.634578e-04 8.330361e-02 2.513703e-01 17 82098121 82098363 243 - 2.565 2.619 0.181