ENSG00000169398

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000395218 ENSG00000169398 HEK293_OSMI2_6hA HEK293_TMG_6hB PTK2 protein_coding protein_coding 18.67792 8.926723 25.18411 1.761271 0.9867586 1.495269 0.5513367 0.5372705 0.000000 0.2724593 0.0000000 -5.774182 0.03532500 0.05026667 0.0000000 -0.05026667 1.063846e-01 1.374513e-30 FALSE TRUE
ENST00000519654 ENSG00000169398 HEK293_OSMI2_6hA HEK293_TMG_6hB PTK2 protein_coding protein_coding 18.67792 8.926723 25.18411 1.761271 0.9867586 1.495269 0.9929388 0.4111530 3.653071 0.4111530 0.9168197 3.120637 0.05770000 0.03843333 0.1425667 0.10413333 3.031720e-01 1.374513e-30 FALSE TRUE
ENST00000523539 ENSG00000169398 HEK293_OSMI2_6hA HEK293_TMG_6hB PTK2 protein_coding protein_coding 18.67792 8.926723 25.18411 1.761271 0.9867586 1.495269 1.6974450 2.8686586 0.000000 0.6143079 0.0000000 -8.169253 0.16537917 0.32283333 0.0000000 -0.32283333 1.374513e-30 1.374513e-30 FALSE TRUE
MSTRG.32160.20 ENSG00000169398 HEK293_OSMI2_6hA HEK293_TMG_6hB PTK2 protein_coding   18.67792 8.926723 25.18411 1.761271 0.9867586 1.495269 2.4302349 0.2896099 3.459885 0.2896099 0.1407748 3.533731 0.09039583 0.05360000 0.1373667 0.08376667 3.269600e-01 1.374513e-30 FALSE TRUE
MSTRG.32160.5 ENSG00000169398 HEK293_OSMI2_6hA HEK293_TMG_6hB PTK2 protein_coding   18.67792 8.926723 25.18411 1.761271 0.9867586 1.495269 5.3948403 1.9392628 6.164141 0.4656390 0.6571688 1.663310 0.23152917 0.21550000 0.2474667 0.03196667 9.054356e-01 1.374513e-30 FALSE TRUE
MSTRG.32160.9 ENSG00000169398 HEK293_OSMI2_6hA HEK293_TMG_6hB PTK2 protein_coding   18.67792 8.926723 25.18411 1.761271 0.9867586 1.495269 1.1003915 0.4792522 4.295910 0.4792522 0.5495993 3.137668 0.06284583 0.04490000 0.1714333 0.12653333 2.743891e-01 1.374513e-30 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000169398 E001 0.4702677 0.0217681645 8.143623e-01   8 140657900 140658381 482 - 0.143 0.186 0.452
ENSG00000169398 E002 0.3088520 0.0261355235 4.689534e-01   8 140658382 140658388 7 - 0.077 0.186 1.452
ENSG00000169398 E003 0.3088520 0.0261355235 4.689534e-01   8 140658389 140658401 13 - 0.077 0.186 1.452
ENSG00000169398 E004 0.6542209 0.0193874923 3.388596e-01   8 140658402 140658404 3 - 0.143 0.316 1.456
ENSG00000169398 E005 70.2628090 0.0025538590 7.561597e-06 1.645059e-04 8 140658405 140658629 225 - 1.725 1.960 0.792
ENSG00000169398 E006 40.4903883 0.0013979517 9.922829e-03 5.781902e-02 8 140658630 140658643 14 - 1.521 1.686 0.562
ENSG00000169398 E007 189.3807273 0.0054400241 7.960308e-06 1.722094e-04 8 140658644 140659070 427 - 2.159 2.377 0.728
ENSG00000169398 E008 51.0183028 0.0062337157 1.147714e-03 1.103109e-02 8 140659071 140659072 2 - 1.594 1.814 0.746
ENSG00000169398 E009 63.4658420 0.0102310717 6.621845e-02 2.165537e-01 8 140659073 140659079 7 - 1.714 1.859 0.488
ENSG00000169398 E010 113.5004100 0.0078535571 3.740300e-03 2.769156e-02 8 140659080 140659238 159 - 1.952 2.130 0.598
ENSG00000169398 E011 47.4504878 0.0008902497 1.292299e-01 3.305426e-01 8 140659239 140659287 49 - 1.606 1.700 0.322
ENSG00000169398 E012 41.2067144 0.0089464486 3.109629e-03 2.407397e-02 8 140659288 140659299 12 - 1.497 1.722 0.767
ENSG00000169398 E013 37.1972117 0.0189389006 5.510020e-02 1.915631e-01 8 140659300 140659300 1 - 1.468 1.654 0.634
ENSG00000169398 E014 37.0022998 0.0180412104 7.653554e-02 2.378403e-01 8 140659301 140659304 4 - 1.472 1.643 0.584
ENSG00000169398 E015 48.0143674 0.0082519821 9.991610e-04 9.907773e-03 8 140659305 140659334 30 - 1.561 1.795 0.794
ENSG00000169398 E016 87.2572143 0.0004387869 3.537169e-05 6.208067e-04 8 140659335 140659396 62 - 1.841 2.017 0.593
ENSG00000169398 E017 111.1486214 0.0030322339 1.378928e-02 7.350086e-02 8 140659397 140659486 90 - 1.969 2.084 0.386
ENSG00000169398 E018 141.8505160 0.0026163180 6.246965e-02 2.082972e-01 8 140659487 140659619 133 - 2.084 2.164 0.266
ENSG00000169398 E019 91.5391012 0.0018488934 8.401277e-02 2.528184e-01 8 140659620 140659678 59 - 1.895 1.980 0.284
ENSG00000169398 E020 0.1779838 0.0383877938 1.000000e+00   8 140660601 140660648 48 - 0.077 0.000 -11.502
ENSG00000169398 E021 1.0288969 0.8075969621 4.302147e-01   8 140662648 140663088 441 - 0.146 0.507 2.475
ENSG00000169398 E022 94.7113173 0.0023540688 7.816405e-02 2.411491e-01 8 140664917 140664997 81 - 1.908 1.994 0.289
ENSG00000169398 E023 50.6248823 0.0031187720 5.945713e-02 2.015890e-01 8 140668269 140668278 10 - 1.631 1.748 0.395
ENSG00000169398 E024 49.8009461 0.0018570917 2.072846e-01 4.385683e-01 8 140668279 140668288 10 - 1.634 1.714 0.272
ENSG00000169398 E025 119.3509086 0.0004553337 1.144268e-01 3.065130e-01 8 140668289 140668424 136 - 2.011 2.078 0.222
ENSG00000169398 E026 5.7490365 0.0295887896 6.061398e-03 4.003441e-02 8 140668425 140669726 1302 - 0.633 1.030 1.556
ENSG00000169398 E027 3.9128589 0.0071474250 6.974629e-02 2.242899e-01 8 140669727 140669735 9 - 0.723 0.415 -1.418
ENSG00000169398 E028 3.2871219 0.1051538468 3.266599e-01 5.658434e-01 8 140669736 140670264 529 - 0.545 0.721 0.767
ENSG00000169398 E029 93.7109073 0.0004464102 4.282994e-01 6.496815e-01 8 140674298 140674404 107 - 1.914 1.955 0.139
ENSG00000169398 E030 1.4862534 0.1115432308 2.861906e-01 5.268799e-01 8 140675430 140675459 30 - 0.412 0.185 -1.576
ENSG00000169398 E031 64.7381468 0.0005854984 2.073696e-02 9.845708e-02 8 140675460 140675499 40 - 1.732 1.851 0.402
ENSG00000169398 E032 0.4341107 0.0232337916 1.037484e-02   8 140675500 140675779 280 - 0.000 0.415 15.958
ENSG00000169398 E033 76.2242495 0.0005030073 5.189091e-02 1.841788e-01 8 140686632 140686694 63 - 1.811 1.906 0.322
ENSG00000169398 E034 0.7084213 0.0270327241 5.483514e-01   8 140686695 140686778 84 - 0.200 0.315 0.868
ENSG00000169398 E035 1.0291572 0.1772492311 6.354104e-01   8 140686870 140687129 260 - 0.299 0.187 -0.884
ENSG00000169398 E036 0.0000000       8 140700770 140700890 121 -      
ENSG00000169398 E037 75.7777963 0.0006505582 1.976539e-01 4.266593e-01 8 140700891 140700920 30 - 1.817 1.885 0.229
ENSG00000169398 E038 62.7618686 0.0006468231 4.579577e-01 6.717253e-01 8 140700921 140700923 3 - 1.742 1.788 0.156
ENSG00000169398 E039 76.0924795 0.0006033814 7.011744e-01 8.363867e-01 8 140700924 140700942 19 - 1.830 1.857 0.092
ENSG00000169398 E040 101.8061434 0.0046327718 2.392602e-01 4.757197e-01 8 140700943 140701022 80 - 1.941 2.017 0.252
ENSG00000169398 E041 103.8109403 0.0051123016 2.771853e-01 5.172081e-01 8 140702570 140702664 95 - 1.951 2.021 0.232
ENSG00000169398 E042 59.4443987 0.0006770183 6.740918e-03 4.342638e-02 8 140702665 140702697 33 - 1.691 1.834 0.483
ENSG00000169398 E043 49.1813018 0.0007718155 3.880424e-02 1.516338e-01 8 140702698 140702707 10 - 1.618 1.740 0.412
ENSG00000169398 E044 0.3337900 0.0551950380 4.631301e-01   8 140702708 140702715 8 - 0.077 0.186 1.458
ENSG00000169398 E045 68.9177311 0.0006199020 3.795924e-02 1.495105e-01 8 140706119 140706156 38 - 1.764 1.870 0.358
ENSG00000169398 E046 75.8406125 0.0005628837 1.284353e-02 6.979381e-02 8 140706157 140706205 49 - 1.800 1.920 0.404
ENSG00000169398 E047 96.9950029 0.0004571549 1.841199e-01 4.093020e-01 8 140717598 140717688 91 - 1.922 1.985 0.212
ENSG00000169398 E048 67.7370018 0.0006493738 8.726496e-02 2.587268e-01 8 140717689 140717709 21 - 1.758 1.848 0.304
ENSG00000169398 E049 0.6238610 0.0193874923 3.366811e-01   8 140717710 140718008 299 - 0.143 0.316 1.455
ENSG00000169398 E050 1.0232875 1.2332936215 3.602090e-01   8 140718009 140718211 203 - 0.078 0.579 3.833
ENSG00000169398 E051 1.3273378 0.9348105679 5.621244e-01   8 140718317 140718734 418 - 0.198 0.578 2.269
ENSG00000169398 E052 0.5008152 0.0402822626 3.977311e-01   8 140721659 140721788 130 - 0.200 0.000 -13.087
ENSG00000169398 E053 0.1614157 0.0350471390 1.000000e+00   8 140735045 140735250 206 - 0.077 0.000 -11.500
ENSG00000169398 E054 85.7935926 0.0006250924 6.168924e-02 2.066123e-01 8 140735251 140735286 36 - 1.862 1.950 0.296
ENSG00000169398 E055 151.1320579 0.0002924410 5.044949e-01 7.039318e-01 8 140735287 140735455 169 - 2.137 2.125 -0.039
ENSG00000169398 E056 103.1913573 0.0004199885 6.241606e-03 4.091435e-02 8 140739018 140739107 90 - 1.995 1.895 -0.339
ENSG00000169398 E057 48.7297259 0.0017885053 1.692300e-01 3.895619e-01 8 140743230 140743236 7 - 1.668 1.596 -0.246
ENSG00000169398 E058 85.3734156 0.0008899553 1.726205e-02 8.640588e-02 8 140743237 140743289 53 - 1.912 1.813 -0.333
ENSG00000169398 E059 77.0227775 0.0005886017 2.596929e-03 2.094104e-02 8 140743290 140743330 41 - 1.874 1.740 -0.452
ENSG00000169398 E060 70.9016604 0.0006928478 1.222761e-02 6.735647e-02 8 140744652 140744684 33 - 1.837 1.723 -0.387
ENSG00000169398 E061 56.1785911 0.0007124554 5.327177e-02 1.873898e-01 8 140744685 140744696 12 - 1.732 1.636 -0.327
ENSG00000169398 E062 53.2659576 0.0007227148 4.848543e-02 1.761685e-01 8 140744697 140744700 4 - 1.710 1.608 -0.346
ENSG00000169398 E063 74.9167570 0.0005595518 4.729851e-03 3.316538e-02 8 140744701 140744746 46 - 1.862 1.736 -0.427
ENSG00000169398 E064 60.9223016 0.0006575191 5.763965e-04 6.366529e-03 8 140744747 140744767 21 - 1.785 1.608 -0.601
ENSG00000169398 E065 0.7577498 0.0930078660 7.509361e-01   8 140744768 140744803 36 - 0.250 0.185 -0.551
ENSG00000169398 E066 1.8967111 0.2566435577 8.498429e-01 9.248967e-01 8 140746450 140746759 310 - 0.418 0.417 -0.002
ENSG00000169398 E067 95.2105278 0.0005309095 3.656211e-04 4.393672e-03 8 140746760 140746833 74 - 1.969 1.824 -0.488
ENSG00000169398 E068 66.4685582 0.0064119279 6.136910e-02 2.058454e-01 8 140746834 140746860 27 - 1.808 1.691 -0.399
ENSG00000169398 E069 0.0000000       8 140746861 140747272 412 -      
ENSG00000169398 E070 0.6129023 0.0190067054 1.000000e+00   8 140750203 140750409 207 - 0.200 0.186 -0.131
ENSG00000169398 E071 0.4820342 0.0213348755 3.940129e-01   8 140751903 140751987 85 - 0.200 0.000 -13.085
ENSG00000169398 E072 102.7450863 0.0019276228 6.736507e-05 1.074292e-03 8 140752232 140752316 85 - 2.008 1.830 -0.596
ENSG00000169398 E073 66.5797245 0.0050776215 3.669356e-03 2.731517e-02 8 140761165 140761181 17 - 1.822 1.649 -0.584
ENSG00000169398 E074 102.3548281 0.0004991984 4.824061e-07 1.500983e-05 8 140761182 140761262 81 - 2.012 1.806 -0.691
ENSG00000169398 E075 0.1723744 0.0845609527 1.737736e-01   8 140762368 140762388 21 - 0.000 0.186 14.380
ENSG00000169398 E076 80.6670649 0.0004816000 1.781373e-05 3.464198e-04 8 140764234 140764290 57 - 1.908 1.714 -0.654
ENSG00000169398 E077 0.0000000       8 140764291 140764523 233 -      
ENSG00000169398 E078 0.0000000       8 140764972 140765236 265 -      
ENSG00000169398 E079 0.7035494 0.0358377086 1.000000e+00   8 140769575 140769592 18 - 0.200 0.186 -0.128
ENSG00000169398 E080 0.0000000       8 140770716 140770799 84 -      
ENSG00000169398 E081 0.0000000       8 140770800 140770966 167 -      
ENSG00000169398 E082 0.0000000       8 140771280 140771444 165 -      
ENSG00000169398 E083 74.7597532 0.0005622289 5.172740e-03 3.552882e-02 8 140789474 140789526 53 - 1.860 1.736 -0.420
ENSG00000169398 E084 58.2172597 0.0007345392 2.289007e-04 2.989281e-03 8 140793354 140793384 31 - 1.768 1.572 -0.667
ENSG00000169398 E085 0.3336024 0.0244411696 4.240354e-02   8 140799220 140799297 78 - 0.000 0.316 15.377
ENSG00000169398 E086 88.2981780 0.0007617953 1.453127e-02 7.636765e-02 8 140800459 140800576 118 - 1.926 1.827 -0.333
ENSG00000169398 E087 90.8016506 0.0005063196 4.105262e-01 6.364382e-01 8 140803543 140803650 108 - 1.919 1.895 -0.082
ENSG00000169398 E088 83.5116422 0.0004911468 5.487501e-01 7.354739e-01 8 140818277 140818354 78 - 1.883 1.867 -0.053
ENSG00000169398 E089 91.7685614 0.0006363194 1.620943e-02 8.256058e-02 8 140818880 140818983 104 - 1.945 1.851 -0.316
ENSG00000169398 E090 63.7284772 0.0017518046 1.757280e-02 8.754334e-02 8 140818984 140819020 37 - 1.795 1.676 -0.403
ENSG00000169398 E091 48.3860794 0.0011967117 1.021763e-02 5.905491e-02 8 140830472 140830475 4 - 1.684 1.539 -0.493
ENSG00000169398 E092 59.4386798 0.0007852473 7.944748e-03 4.906542e-02 8 140830476 140830526 51 - 1.768 1.635 -0.450
ENSG00000169398 E093 78.4926137 0.0040342057 2.928036e-04 3.657041e-03 8 140846260 140846322 63 - 1.899 1.707 -0.650
ENSG00000169398 E094 56.7176736 0.0053019534 2.702148e-04 3.429648e-03 8 140846599 140846606 8 - 1.767 1.538 -0.780
ENSG00000169398 E095 72.2370434 0.0019099949 2.869659e-05 5.192138e-04 8 140846607 140846648 42 - 1.869 1.655 -0.723
ENSG00000169398 E096 50.4386124 0.0107531178 3.016708e-03 2.350353e-02 8 140846649 140846658 10 - 1.716 1.499 -0.741
ENSG00000169398 E097 56.7897532 0.0025119836 7.205023e-04 7.613581e-03 8 140846659 140846678 20 - 1.761 1.570 -0.648
ENSG00000169398 E098 74.1431833 0.0011431069 1.386008e-03 1.279774e-02 8 140864312 140864399 88 - 1.866 1.718 -0.502
ENSG00000169398 E099 2.2450127 0.0540934792 1.610312e-02 8.217435e-02 8 140879162 140879440 279 - 0.295 0.728 2.157
ENSG00000169398 E100 0.9723526 0.7212444520 2.225398e-01   8 140879441 140879470 30 - 0.078 0.531 3.616
ENSG00000169398 E101 25.0080675 0.0017369407 5.914427e-01 7.646795e-01 8 140879471 140879475 5 - 1.358 1.408 0.172
ENSG00000169398 E102 27.4325235 0.0012767815 9.074171e-01 9.558149e-01 8 140879476 140879479 4 - 1.407 1.408 0.002
ENSG00000169398 E103 26.0511500 0.0014247554 9.008536e-01 9.523035e-01 8 140879480 140879481 2 - 1.380 1.398 0.064
ENSG00000169398 E104 36.0639600 0.0010036853 2.784839e-01 5.185727e-01 8 140879482 140879511 30 - 1.538 1.475 -0.216
ENSG00000169398 E105 56.6159337 0.0006520821 2.247780e-02 1.041541e-01 8 140879512 140879637 126 - 1.740 1.625 -0.391
ENSG00000169398 E106 0.0000000       8 140890316 140890542 227 -      
ENSG00000169398 E107 53.2272354 0.0007065128 3.502045e-02 1.416323e-01 8 140890543 140890583 41 - 1.711 1.602 -0.371
ENSG00000169398 E108 44.4129879 0.0009606800 2.024618e-01 4.327145e-01 8 140890584 140890603 20 - 1.622 1.553 -0.235
ENSG00000169398 E109 79.2790670 0.0005811246 1.597668e-01 3.764528e-01 8 140890604 140890769 166 - 1.868 1.814 -0.184
ENSG00000169398 E110 0.1426347 0.0330344136 1.000000e+00   8 140909549 140909621 73 - 0.077 0.000 -11.498
ENSG00000169398 E111 0.5008152 0.0402822626 3.977311e-01   8 140920814 140920869 56 - 0.200 0.000 -13.087
ENSG00000169398 E112 0.1614157 0.0350471390 1.000000e+00   8 140920870 140920889 20 - 0.077 0.000 -11.500
ENSG00000169398 E113 0.4161375 0.0985799979 8.121461e-01   8 140920890 140921132 243 - 0.142 0.185 0.456
ENSG00000169398 E114 0.0000000       8 140921133 140921219 87 -      
ENSG00000169398 E115 2.8374392 0.0284113459 9.331765e-01 9.687614e-01 8 140925562 140925587 26 - 0.547 0.565 0.085
ENSG00000169398 E116 1.6009132 0.0111074688 3.885971e-01 6.193359e-01 8 140925588 140925660 73 - 0.336 0.496 0.870
ENSG00000169398 E117 18.9654897 0.0017701501 9.478952e-01 9.762296e-01 8 140925661 140925688 28 - 1.254 1.257 0.012
ENSG00000169398 E118 23.5321010 0.0014772692 4.700385e-01 6.801030e-01 8 140925689 140925749 61 - 1.324 1.389 0.228
ENSG00000169398 E119 0.2027342 0.0340481850 1.715184e-01   8 140927346 140927414 69 - 0.000 0.186 14.380
ENSG00000169398 E120 0.0000000       8 140934493 140934590 98 -      
ENSG00000169398 E121 4.5983631 0.0192186776 7.450839e-01 8.637151e-01 8 140948666 140948723 58 - 0.722 0.676 -0.191
ENSG00000169398 E122 0.0000000       8 140954743 140954835 93 -      
ENSG00000169398 E123 8.5941797 0.0109832091 9.042169e-02 2.645326e-01 8 140983842 140984077 236 - 0.871 1.086 0.798
ENSG00000169398 E124 4.1119841 0.0607178012 1.800889e-01 4.041339e-01 8 140984078 140984155 78 - 0.574 0.808 0.982
ENSG00000169398 E125 1.2898484 0.0172757131 5.286011e-01   8 141000880 141001124 245 - 0.295 0.416 0.721
ENSG00000169398 E126 33.3505359 0.0152239708 6.397639e-01 7.967736e-01 8 141001125 141001379 255 - 1.474 1.522 0.165
ENSG00000169398 E127 0.0000000       8 141002014 141002216 203 -