ENSG00000169180

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000304658 ENSG00000169180 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO6 protein_coding protein_coding 105.172 144.2189 63.8119 19.42289 2.269513 -1.176236 70.07106 98.80236 52.06322 14.991124 1.928708 -0.92415 0.7137333 0.6821667 0.8158333 0.1336667 1.863530e-03 2.703481e-32 FALSE TRUE
ENST00000568065 ENSG00000169180 HEK293_OSMI2_6hA HEK293_TMG_6hB XPO6 protein_coding protein_coding 105.172 144.2189 63.8119 19.42289 2.269513 -1.176236 22.08834 28.86453 0.00000 6.068487 0.000000 -11.49558 0.1442542 0.1978333 0.0000000 -0.1978333 2.703481e-32 2.703481e-32 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000169180 E001 5.8210431 1.126664e-01 5.888848e-01 7.629052e-01 16 28097976 28097978 3 - 0.694 0.831 0.553
ENSG00000169180 E002 17.8419034 5.412455e-02 3.978392e-01 6.266535e-01 16 28097979 28097994 16 - 1.125 1.276 0.535
ENSG00000169180 E003 368.8738839 2.850506e-03 8.817514e-02 2.603425e-01 16 28097995 28098117 123 - 2.480 2.546 0.222
ENSG00000169180 E004 490.6645583 5.860977e-04 7.555852e-04 7.905110e-03 16 28098118 28098173 56 - 2.595 2.673 0.260
ENSG00000169180 E005 1878.3575943 1.555807e-03 7.538095e-08 2.883852e-06 16 28098174 28098618 445 - 3.149 3.265 0.389
ENSG00000169180 E006 542.4655723 4.098394e-04 1.539854e-06 4.140977e-05 16 28098619 28098639 21 - 2.622 2.722 0.332
ENSG00000169180 E007 33.1441291 3.572952e-02 4.069990e-01 6.337361e-01 16 28101055 28101269 215 - 1.423 1.520 0.333
ENSG00000169180 E008 35.5192821 5.547139e-03 3.156516e-01 5.556554e-01 16 28101270 28101457 188 - 1.464 1.540 0.262
ENSG00000169180 E009 1310.1847420 3.925174e-04 5.001509e-05 8.319013e-04 16 28101458 28101685 228 - 3.031 3.095 0.213
ENSG00000169180 E010 395.9931055 2.015298e-04 3.244826e-01 5.637877e-01 16 28101686 28101688 3 - 2.541 2.567 0.084
ENSG00000169180 E011 824.2297495 1.022594e-03 3.002275e-02 1.274153e-01 16 28101847 28101945 99 - 2.840 2.892 0.171
ENSG00000169180 E012 4.0003041 5.330039e-02 7.775246e-01 8.832240e-01 16 28101946 28101986 41 - 0.694 0.645 -0.210
ENSG00000169180 E013 938.7401022 3.953561e-03 1.503920e-01 3.628618e-01 16 28104546 28104707 162 - 2.894 2.949 0.180
ENSG00000169180 E014 3.0513465 1.958914e-01 8.487664e-01 9.242236e-01 16 28105689 28106042 354 - 0.545 0.592 0.212
ENSG00000169180 E015 600.5486266 4.714926e-03 1.625378e-01 3.805322e-01 16 28106043 28106111 69 - 2.698 2.757 0.195
ENSG00000169180 E016 765.1647667 2.329649e-03 5.916034e-01 7.648051e-01 16 28106112 28106214 103 - 2.829 2.851 0.074
ENSG00000169180 E017 706.6457310 9.648886e-04 8.195705e-01 9.078719e-01 16 28106383 28106452 70 - 2.801 2.813 0.041
ENSG00000169180 E018 545.1062784 2.578754e-04 7.013908e-01 8.365057e-01 16 28106453 28106497 45 - 2.696 2.695 -0.005
ENSG00000169180 E019 383.9561763 2.062572e-04 7.400825e-02 2.328011e-01 16 28107522 28107528 7 - 2.564 2.532 -0.106
ENSG00000169180 E020 632.4762591 2.946379e-04 5.380565e-01 7.276841e-01 16 28107529 28107587 59 - 2.762 2.757 -0.017
ENSG00000169180 E021 757.2928714 9.572891e-05 1.722893e-01 3.935634e-01 16 28107588 28107677 90 - 2.820 2.845 0.082
ENSG00000169180 E022 742.5656785 1.204420e-04 4.908481e-01 6.945617e-01 16 28111817 28111942 126 - 2.820 2.835 0.050
ENSG00000169180 E023 535.4672033 1.557311e-04 6.481450e-01 8.022951e-01 16 28111943 28112006 64 - 2.678 2.690 0.042
ENSG00000169180 E024 704.0485272 9.555817e-05 2.359923e-02 1.078438e-01 16 28112904 28113050 147 - 2.779 2.818 0.130
ENSG00000169180 E025 3.6675822 7.065694e-03 1.858388e-02 9.101605e-02 16 28117037 28117317 281 - 0.840 0.493 -1.484
ENSG00000169180 E026 665.9190188 1.076871e-04 1.705212e-02 8.565536e-02 16 28117318 28117462 145 - 2.753 2.795 0.140
ENSG00000169180 E027 580.0909471 1.126596e-04 8.384778e-01 9.185685e-01 16 28121670 28121762 93 - 2.722 2.724 0.004
ENSG00000169180 E028 527.0919402 1.331500e-04 8.079600e-01 9.009973e-01 16 28125689 28125768 80 - 2.675 2.684 0.029
ENSG00000169180 E029 413.3190561 5.415010e-04 4.282486e-01 6.496392e-01 16 28125769 28125828 60 - 2.561 2.582 0.072
ENSG00000169180 E030 263.9620305 2.220969e-03 8.478330e-01 9.237533e-01 16 28125829 28125831 3 - 2.375 2.385 0.031
ENSG00000169180 E031 311.0717318 1.383280e-03 6.993207e-01 8.351317e-01 16 28125832 28125848 17 - 2.459 2.451 -0.025
ENSG00000169180 E032 1.0944886 1.583079e-02 9.405622e-01   16 28126618 28126760 143 - 0.298 0.313 0.101
ENSG00000169180 E033 430.4172654 7.867723e-04 2.326703e-01 4.682384e-01 16 28132334 28132397 64 - 2.572 2.603 0.105
ENSG00000169180 E034 292.3198595 1.755804e-04 5.476630e-01 7.346022e-01 16 28132398 28132403 6 - 2.413 2.431 0.062
ENSG00000169180 E035 562.6643700 1.340145e-04 6.820238e-01 8.239666e-01 16 28133841 28133930 90 - 2.710 2.708 -0.007
ENSG00000169180 E036 303.9349071 1.668733e-04 2.007085e-03 1.711557e-02 16 28133931 28133933 3 - 2.487 2.423 -0.213
ENSG00000169180 E037 630.4681175 5.708378e-04 5.973132e-03 3.959928e-02 16 28135216 28135324 109 - 2.790 2.744 -0.153
ENSG00000169180 E038 1.9576504 1.011360e-02 7.289898e-02 2.306159e-01 16 28146091 28146093 3 - 0.174 0.521 2.236
ENSG00000169180 E039 562.3257105 1.200068e-03 1.753778e-03 1.539465e-02 16 28146094 28146161 68 - 2.753 2.688 -0.217
ENSG00000169180 E040 435.5539543 2.306352e-03 1.437514e-02 7.577965e-02 16 28146162 28146171 10 - 2.642 2.577 -0.216
ENSG00000169180 E041 450.4444982 1.138219e-03 1.087224e-03 1.058084e-02 16 28146172 28146203 32 - 2.662 2.589 -0.241
ENSG00000169180 E042 1.2073133 1.499558e-02 4.721599e-01   16 28146204 28146303 100 - 0.394 0.266 -0.806
ENSG00000169180 E043 655.9576526 1.357767e-03 9.195911e-03 5.469206e-02 16 28152659 28152785 127 - 2.812 2.759 -0.175
ENSG00000169180 E044 6.0678239 1.735566e-01 9.302305e-01 9.671014e-01 16 28152786 28152918 133 - 0.771 0.827 0.221
ENSG00000169180 E045 6.8462737 2.440219e-01 5.407990e-01 7.295883e-01 16 28152930 28152964 35 - 0.919 0.829 -0.345
ENSG00000169180 E046 11.8153687 1.523545e-01 6.222164e-02 2.077803e-01 16 28152965 28153209 245 - 1.280 0.937 -1.240
ENSG00000169180 E047 3.9547475 1.436695e-01 3.705357e-01 6.043776e-01 16 28154588 28154612 25 - 0.774 0.602 -0.718
ENSG00000169180 E048 5.3528768 2.029269e-01 6.126703e-02 2.056415e-01 16 28155597 28155701 105 - 1.010 0.606 -1.606
ENSG00000169180 E049 5.3598211 1.606181e-01 8.168897e-02 2.481871e-01 16 28155702 28155771 70 - 0.976 0.630 -1.373
ENSG00000169180 E050 6.1394883 1.554393e-01 8.726506e-02 2.587268e-01 16 28155772 28155945 174 - 1.018 0.690 -1.273
ENSG00000169180 E051 3.9239575 5.613214e-01 4.940870e-01 6.967412e-01 16 28155946 28155975 30 - 0.829 0.556 -1.147
ENSG00000169180 E052 486.8925499 1.048948e-03 2.658285e-02 1.170286e-01 16 28156074 28156132 59 - 2.677 2.631 -0.152
ENSG00000169180 E053 787.1528055 1.011147e-03 1.926203e-03 1.657614e-02 16 28156133 28156314 182 - 2.895 2.837 -0.193
ENSG00000169180 E054 884.8891789 1.118675e-03 1.615422e-06 4.325018e-05 16 28156315 28156527 213 - 2.969 2.876 -0.310
ENSG00000169180 E055 0.1723744 4.142093e-02 1.000000e+00   16 28165271 28165419 149 - 0.001 0.083 7.236
ENSG00000169180 E056 473.4515265 9.608711e-04 3.212516e-05 5.724650e-04 16 28166508 28166585 78 - 2.696 2.605 -0.302
ENSG00000169180 E057 482.1702011 3.150432e-04 3.924620e-03 2.872681e-02 16 28169750 28169844 95 - 2.676 2.626 -0.169
ENSG00000169180 E058 440.5376895 2.542779e-04 3.082553e-02 1.298334e-01 16 28169845 28169909 65 - 2.628 2.590 -0.126
ENSG00000169180 E059 1.6023183 2.114477e-02 5.031744e-01 7.029640e-01 16 28173065 28173122 58 - 0.473 0.355 -0.641
ENSG00000169180 E060 631.0420797 7.668165e-04 1.654285e-02 8.378637e-02 16 28175898 28176057 160 - 2.788 2.745 -0.144
ENSG00000169180 E061 351.1959948 3.513898e-04 2.594802e-03 2.093084e-02 16 28176058 28176095 38 - 2.546 2.484 -0.205
ENSG00000169180 E062 479.6752386 1.771775e-04 3.835242e-04 4.574786e-03 16 28177220 28177332 113 - 2.680 2.620 -0.199
ENSG00000169180 E063 414.5428600 1.930970e-04 3.026742e-04 3.757829e-03 16 28180941 28181031 91 - 2.622 2.556 -0.220
ENSG00000169180 E064 0.4458772 2.176816e-02 8.935224e-01   16 28181032 28181122 91 - 0.174 0.153 -0.222
ENSG00000169180 E065 16.8795268 1.940404e-03 2.417277e-01 4.784824e-01 16 28208987 28209055 69 - 1.284 1.186 -0.344
ENSG00000169180 E066 10.0799838 3.356963e-03 2.302796e-01 4.654515e-01 16 28209056 28209122 67 - 1.091 0.966 -0.459
ENSG00000169180 E067 515.8423270 5.308337e-04 2.259632e-01 4.605311e-01 16 28211366 28211965 600 - 2.652 2.681 0.096