ENSG00000166444

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000526757 ENSG00000166444 HEK293_OSMI2_6hA HEK293_TMG_6hB DENND2B protein_coding protein_coding 9.39434 13.82821 6.162736 0.9935874 0.5352 -1.164676 1.4837556 1.8995295 0.7446056 0.21424985 0.38681451 -1.339422 0.14502500 0.13823333 0.13266667 -0.005566667 0.92285793 0.02761868 FALSE TRUE
ENST00000528452 ENSG00000166444 HEK293_OSMI2_6hA HEK293_TMG_6hB DENND2B protein_coding processed_transcript 9.39434 13.82821 6.162736 0.9935874 0.5352 -1.164676 1.2628270 1.2061365 0.6797857 0.23476500 0.38022415 -0.818085 0.11992500 0.08566667 0.10090000 0.015233333 0.96966568 0.02761868   FALSE
ENST00000532162 ENSG00000166444 HEK293_OSMI2_6hA HEK293_TMG_6hB DENND2B protein_coding retained_intron 9.39434 13.82821 6.162736 0.9935874 0.5352 -1.164676 1.6336915 2.8801878 0.9690652 0.69184254 0.49850920 -1.561686 0.15956667 0.20323333 0.14446667 -0.058766667 0.85514974 0.02761868 FALSE TRUE
ENST00000534127 ENSG00000166444 HEK293_OSMI2_6hA HEK293_TMG_6hB DENND2B protein_coding protein_coding 9.39434 13.82821 6.162736 0.9935874 0.5352 -1.164676 1.4858421 2.7121438 0.8602352 0.25573218 0.09814109 -1.645266 0.16492917 0.19580000 0.14250000 -0.053300000 0.59567021 0.02761868 FALSE TRUE
MSTRG.5124.2 ENSG00000166444 HEK293_OSMI2_6hA HEK293_TMG_6hB DENND2B protein_coding   9.39434 13.82821 6.162736 0.9935874 0.5352 -1.164676 0.9050366 1.6005354 0.4391735 0.29084924 0.43917347 -1.842196 0.10422083 0.11403333 0.06376667 -0.050266667 0.45758633 0.02761868 FALSE TRUE
MSTRG.5124.9 ENSG00000166444 HEK293_OSMI2_6hA HEK293_TMG_6hB DENND2B protein_coding   9.39434 13.82821 6.162736 0.9935874 0.5352 -1.164676 0.1596227 0.1465086 0.4996170 0.07390948 0.05278317 1.703171 0.02520833 0.01090000 0.08383333 0.072933333 0.02761868 0.02761868 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000166444 E001 0.5339515 1.0247809293 0.14052829   11 8693082 8693350 269 - 0.448 0.000 -16.028
ENSG00000166444 E002 0.0000000       11 8693351 8693351 1 -      
ENSG00000166444 E003 0.2027342 0.0378348666 1.00000000   11 8693352 8693352 1 - 0.000 0.073 11.412
ENSG00000166444 E004 50.8557889 0.2482341250 0.10569637 0.29185039 11 8693353 8693747 395 - 1.381 1.706 1.113
ENSG00000166444 E005 32.9574590 0.1791683646 0.13749544 0.34370261 11 8693748 8693872 125 - 1.248 1.516 0.929
ENSG00000166444 E006 15.3598357 0.0155166263 0.09363491 0.27049113 11 8693873 8693888 16 - 0.978 1.201 0.806
ENSG00000166444 E007 14.3824760 0.0025239522 0.01867396 0.09130678 11 8693889 8693898 10 - 0.893 1.183 1.063
ENSG00000166444 E008 47.3613686 0.0934014681 0.23007003 0.46521519 11 8693899 8694061 163 - 1.487 1.651 0.561
ENSG00000166444 E009 34.0169186 0.0013902672 0.06745110 0.21934717 11 8694062 8694095 34 - 1.354 1.511 0.542
ENSG00000166444 E010 33.4848566 0.0018017740 0.27960955 0.51971593 11 8694096 8694130 35 - 1.396 1.496 0.347
ENSG00000166444 E011 0.7063259 0.7758200034 0.23718595   11 8694547 8694655 109 - 0.446 0.074 -3.270
ENSG00000166444 E012 53.0675260 0.0184384262 0.05242334 0.18530282 11 8695463 8695549 87 - 1.520 1.705 0.630
ENSG00000166444 E013 1.2123026 0.3167247926 0.44699719   11 8695550 8695995 446 - 0.440 0.241 -1.242
ENSG00000166444 E014 36.4519891 0.2384618654 0.29484995 0.53537233 11 8696427 8696435 9 - 1.368 1.543 0.604
ENSG00000166444 E015 44.2206374 0.2840056100 0.25712459 0.49589187 11 8696436 8696464 29 - 1.425 1.630 0.700
ENSG00000166444 E016 68.8434188 0.1604706554 0.29948948 0.53990575 11 8696465 8696666 202 - 1.662 1.808 0.494
ENSG00000166444 E017 35.8848488 0.0010786748 0.53768617 0.72745638 11 8697525 8697575 51 - 1.516 1.497 -0.068
ENSG00000166444 E018 38.4698058 0.0011249438 0.52285950 0.71694444 11 8697576 8697636 61 - 1.546 1.526 -0.067
ENSG00000166444 E019 1.3493278 0.0525940059 0.39772728   11 8697637 8697773 137 - 0.433 0.283 -0.896
ENSG00000166444 E020 0.7962354 0.0202978531 0.41582998   11 8697924 8697964 41 - 0.330 0.190 -1.052
ENSG00000166444 E021 33.9824548 0.0017363506 0.50895648 0.70711278 11 8698933 8698974 42 - 1.501 1.478 -0.080
ENSG00000166444 E022 1.4271109 0.0943237353 0.50701164 0.70565772 11 8698975 8699020 46 - 0.434 0.319 -0.661
ENSG00000166444 E023 45.7945322 0.0009087123 0.61774901 0.78226917 11 8699213 8699390 178 - 1.611 1.603 -0.025
ENSG00000166444 E024 4.2638601 0.1094495980 0.53133827 0.72299005 11 8699857 8699965 109 - 0.518 0.682 0.733
ENSG00000166444 E025 3.0018691 0.0743505011 0.28107137 0.52134063 11 8699966 8700012 47 - 0.331 0.581 1.299
ENSG00000166444 E026 1.4468720 0.0119191702 0.93262248 0.96846450 11 8702570 8702571 2 - 0.330 0.358 0.171
ENSG00000166444 E027 30.7897508 0.0091013961 0.96405798 0.98390650 11 8702572 8702673 102 - 1.415 1.446 0.105
ENSG00000166444 E028 25.2939877 0.0013701780 0.89443292 0.94893199 11 8702674 8702720 47 - 1.332 1.364 0.112
ENSG00000166444 E029 0.5059767 0.0213799530 0.48308099   11 8702721 8702817 97 - 0.000 0.190 12.993
ENSG00000166444 E030 2.6124342 0.0800541786 0.26357829 0.50285114 11 8702818 8703398 581 - 0.646 0.452 -0.903
ENSG00000166444 E031 1.0288969 0.5852700499 0.50572651   11 8703399 8703611 213 - 0.334 0.244 -0.617
ENSG00000166444 E032 18.4732785 0.0018647676 0.71675649 0.84609481 11 8707085 8707102 18 - 1.182 1.238 0.195
ENSG00000166444 E033 34.9483670 0.0015921582 0.71762443 0.84668973 11 8707103 8707205 103 - 1.452 1.499 0.163
ENSG00000166444 E034 23.0740768 0.0061611714 0.70344935 0.83782302 11 8707206 8707225 20 - 1.270 1.326 0.196
ENSG00000166444 E035 0.5363366 0.0401835752 0.48662059   11 8707226 8707266 41 - 0.000 0.191 12.997
ENSG00000166444 E036 31.6886247 0.0094850670 0.83337698 0.91565083 11 8707777 8707854 78 - 1.442 1.445 0.012
ENSG00000166444 E037 0.8203656 0.3851687625 0.37072716   11 8707911 8708081 171 - 0.000 0.284 13.740
ENSG00000166444 E038 30.6565248 0.0012443154 0.99270464 0.99800545 11 8710845 8710910 66 - 1.415 1.437 0.075
ENSG00000166444 E039 19.3570044 0.0019196834 0.72123206 0.84890930 11 8710911 8710914 4 - 1.198 1.252 0.189
ENSG00000166444 E040 0.5649788 0.0372789038 0.33085177   11 8710915 8710957 43 - 0.000 0.237 13.398
ENSG00000166444 E041 19.6796481 0.0018735439 0.81111975 0.90294241 11 8711122 8711125 4 - 1.214 1.256 0.150
ENSG00000166444 E042 40.7933929 0.0011574372 0.94092769 0.97271946 11 8711126 8711231 106 - 1.539 1.556 0.059
ENSG00000166444 E043 0.3032425 0.0274424043 0.81892550   11 8711904 8711967 64 - 0.000 0.135 12.406
ENSG00000166444 E044 0.3032425 0.0274424043 0.81892550   11 8711968 8712036 69 - 0.000 0.135 12.406
ENSG00000166444 E045 28.4631852 0.0014362980 0.48526493 0.69072955 11 8712551 8712599 49 - 1.343 1.419 0.263
ENSG00000166444 E046 39.8907383 0.0011942947 0.87079111 0.93639140 11 8712600 8712735 136 - 1.517 1.549 0.112
ENSG00000166444 E047 21.8988842 0.0340875265 0.31144748 0.55185522 11 8713998 8714042 45 - 1.356 1.266 -0.314
ENSG00000166444 E048 35.2021958 0.0011230001 0.37078081 0.60456356 11 8714610 8714706 97 - 1.425 1.509 0.290
ENSG00000166444 E049 0.3032425 0.0274424043 0.81892550   11 8715463 8715602 140 - 0.000 0.135 12.406
ENSG00000166444 E050 27.3728750 0.0015900172 0.40853473 0.63489324 11 8715603 8715643 41 - 1.320 1.407 0.301
ENSG00000166444 E051 23.8695908 0.0088141920 0.62853857 0.78962733 11 8715644 8715672 29 - 1.283 1.351 0.238
ENSG00000166444 E052 27.9746645 0.0048284906 0.22237793 0.45633465 11 8715673 8715722 50 - 1.451 1.375 -0.263
ENSG00000166444 E053 24.6748437 0.0017912398 0.06762447 0.21973005 11 8715723 8715741 19 - 1.434 1.313 -0.417
ENSG00000166444 E054 23.5086589 0.0023109777 0.08903112 0.26194614 11 8715742 8715754 13 - 1.406 1.290 -0.402
ENSG00000166444 E055 24.9795891 0.0027760581 0.71016324 0.84187785 11 8715755 8715780 26 - 1.354 1.344 -0.036
ENSG00000166444 E056 20.5187216 0.0043753704 0.31051447 0.55099001 11 8715781 8715798 18 - 1.320 1.251 -0.241
ENSG00000166444 E057 21.3822070 0.0237119128 0.59530887 0.76723588 11 8715799 8715818 20 - 1.310 1.278 -0.109
ENSG00000166444 E058 0.4161375 0.0747863753 0.12631274   11 8715819 8715830 12 - 0.329 0.073 -2.636
ENSG00000166444 E059 29.2890774 0.0102041097 0.02866960 0.12338849 11 8717741 8717793 53 - 1.532 1.378 -0.531
ENSG00000166444 E060 27.9409695 0.0231453050 0.09832280 0.27883959 11 8717794 8717831 38 - 1.496 1.362 -0.464
ENSG00000166444 E061 29.6502298 0.0458264483 0.35954656 0.59545402 11 8717832 8717878 47 - 1.483 1.398 -0.295
ENSG00000166444 E062 18.8205501 0.0024145441 0.65944021 0.80964238 11 8717879 8717881 3 - 1.183 1.246 0.226
ENSG00000166444 E063 20.3045068 0.0060861251 0.97139009 0.98755150 11 8717882 8717892 11 - 1.243 1.272 0.099
ENSG00000166444 E064 0.1723744 0.0358837059 1.00000000   11 8717893 8718060 168 - 0.000 0.073 11.409
ENSG00000166444 E065 0.0000000       11 8718359 8718427 69 -      
ENSG00000166444 E066 0.0000000       11 8718428 8719143 716 -      
ENSG00000166444 E067 37.9748971 0.0036881018 0.93694267 0.97067553 11 8726073 8726209 137 - 1.509 1.528 0.064
ENSG00000166444 E068 0.5227326 0.4001763687 0.67207672   11 8726210 8726319 110 - 0.198 0.137 -0.631
ENSG00000166444 E069 18.9440575 0.0129736237 0.74268110 0.86208208 11 8729950 8730010 61 - 1.182 1.238 0.197
ENSG00000166444 E070 29.7721319 0.0050288672 0.29264219 0.53335380 11 8730011 8730304 294 - 1.332 1.441 0.379
ENSG00000166444 E071 27.4219397 0.0066186588 0.78301889 0.88643835 11 8730305 8730620 316 - 1.355 1.404 0.172
ENSG00000166444 E072 22.3507300 0.0286807373 0.91280575 0.95850051 11 8730621 8730807 187 - 1.271 1.311 0.140
ENSG00000166444 E073 8.7790345 0.0389825525 0.83888650 0.91877324 11 8730808 8730827 20 - 0.925 0.922 -0.009
ENSG00000166444 E074 6.1949976 0.0056156203 0.74230906 0.86182695 11 8730828 8730830 3 - 0.744 0.812 0.270
ENSG00000166444 E075 7.6489365 0.0100227723 0.34021832 0.57816211 11 8730831 8730841 11 - 0.744 0.902 0.616
ENSG00000166444 E076 9.2808592 0.0379202443 0.27706258 0.51708270 11 8730842 8730856 15 - 0.786 0.980 0.744
ENSG00000166444 E077 8.8293725 0.0388880941 0.12423588 0.32242852 11 8730857 8730863 7 - 0.697 0.973 1.078
ENSG00000166444 E078 9.6256079 0.0270250312 0.20597272 0.43700119 11 8730864 8730870 7 - 0.786 0.996 0.801
ENSG00000166444 E079 9.1022552 0.0169430383 0.07108171 0.22690003 11 8730871 8730874 4 - 0.697 0.986 1.125
ENSG00000166444 E080 13.0122745 0.0217516834 0.33624633 0.57467880 11 8730875 8730916 42 - 0.953 1.103 0.551
ENSG00000166444 E081 10.2446124 0.0468182436 0.81444187 0.90490957 11 8730917 8730921 5 - 0.982 0.974 -0.028
ENSG00000166444 E082 13.0350151 0.0281627490 0.99499180 0.99904441 11 8730922 8730954 33 - 1.052 1.078 0.096
ENSG00000166444 E083 10.0864187 0.0272543891 0.46643785 0.67762270 11 8730955 8730980 26 - 1.029 0.953 -0.281
ENSG00000166444 E084 10.2043731 0.0137544386 0.16166524 0.37921071 11 8730981 8731004 24 - 1.092 0.941 -0.556
ENSG00000166444 E085 9.7269211 0.0307453757 0.20701970 0.43820759 11 8731005 8731039 35 - 1.090 0.929 -0.590
ENSG00000166444 E086 7.7692184 0.0486618617 0.04453792 0.16645898 11 8731040 8731067 28 - 1.089 0.807 -1.059
ENSG00000166444 E087 11.3606580 0.0498751287 0.16975329 0.39016882 11 8731068 8731117 50 - 1.163 0.986 -0.644
ENSG00000166444 E088 9.0300263 0.0123786785 0.19657570 0.42526753 11 8731118 8731122 5 - 1.050 0.909 -0.522
ENSG00000166444 E089 9.8031269 0.0187661889 0.01032527 0.05952030 11 8731123 8731129 7 - 1.181 0.889 -1.072
ENSG00000166444 E090 10.0050533 0.0204402696 0.04490399 0.16736675 11 8731130 8731132 3 - 1.148 0.919 -0.840
ENSG00000166444 E091 12.8912352 0.0064441999 0.01841059 0.09039121 11 8731133 8731169 37 - 1.243 1.021 -0.795
ENSG00000166444 E092 10.3852941 0.0228972670 0.01524055 0.07898789 11 8731170 8731199 30 - 1.197 0.917 -1.021
ENSG00000166444 E093 7.8048124 0.0095848519 0.02960084 0.12615818 11 8731200 8731209 10 - 1.071 0.823 -0.933
ENSG00000166444 E094 22.8982170 0.0019267840 0.05548555 0.19244110 11 8750621 8750725 105 - 1.415 1.285 -0.453
ENSG00000166444 E095 0.0000000       11 8757046 8757152 107 -      
ENSG00000166444 E096 0.0000000       11 8766637 8766712 76 -      
ENSG00000166444 E097 0.0000000       11 8771674 8771919 246 -      
ENSG00000166444 E098 0.0000000       11 8774122 8774301 180 -      
ENSG00000166444 E099 0.0000000       11 8776192 8776679 488 -      
ENSG00000166444 E100 0.0000000       11 8794687 8794842 156 -      
ENSG00000166444 E101 0.1779838 0.0439434600 0.13806754   11 8807826 8810516 2691 - 0.196 0.000 -14.717
ENSG00000166444 E102 0.0000000       11 8810517 8810612 96 -      
ENSG00000166444 E103 0.1779838 0.0439434600 0.13806754   11 8810613 8811246 634 - 0.196 0.000 -14.717
ENSG00000166444 E104 15.2205503 0.0024199967 0.01265249 0.06905401 11 8811247 8811282 36 - 1.296 1.085 -0.750
ENSG00000166444 E105 13.3873820 0.0056137425 0.05573583 0.19302411 11 8811283 8811331 49 - 1.214 1.038 -0.633
ENSG00000166444 E106 6.8824219 0.0110110000 0.03612916 0.14456451 11 8811332 8811335 4 - 1.005 0.748 -0.987
ENSG00000166444 E107 0.0000000       11 8811336 8811341 6 -      
ENSG00000166444 E108 0.0000000       11 8811417 8811580 164 -      
ENSG00000166444 E109 3.9659552 0.0068723784 0.07036577 0.22545802 11 8830701 8830874 174 - 0.825 0.573 -1.053
ENSG00000166444 E110 9.7385269 0.0719940574 0.01690908 0.08511831 11 8831556 8831688 133 - 1.201 0.869 -1.220
ENSG00000166444 E111 0.1308682 0.0311236269 1.00000000   11 8831794 8831939 146 - 0.000 0.073 11.404
ENSG00000166444 E112 0.0000000       11 8832562 8832587 26 -      
ENSG00000166444 E113 0.0000000       11 8835604 8835623 20 -      
ENSG00000166444 E114 0.0000000       11 8835624 8835711 88 -      
ENSG00000166444 E115 6.4589758 0.0451178026 0.41862454 0.64257634 11 8839310 8839350 41 - 0.895 0.794 -0.390
ENSG00000166444 E116 0.0000000       11 8857343 8857436 94 -      
ENSG00000166444 E117 1.1423443 0.2948145385 0.87268240   11 8870835 8870953 119 - 0.326 0.311 -0.097
ENSG00000166444 E118 10.4197835 0.0029900113 0.95744121 0.98057142 11 8870954 8871088 135 - 0.979 1.006 0.099
ENSG00000166444 E119 2.5342758 0.0100919446 0.77660473 0.88268068 11 8871089 8871333 245 - 0.515 0.480 -0.174
ENSG00000166444 E120 2.2014135 0.0102250449 0.86575269 0.93360290 11 8871334 8871418 85 - 0.432 0.479 0.237
ENSG00000166444 E121 0.4756169 0.0338946119 0.48625659   11 8881010 8881109 100 - 0.000 0.190 12.992
ENSG00000166444 E122 0.0000000       11 8895534 8895581 48 -      
ENSG00000166444 E123 0.4880035 0.1234378577 0.14335611   11 8909747 8909911 165 - 0.328 0.074 -2.611
ENSG00000166444 E124 1.1843278 0.0149356966 0.10933068   11 8910821 8910951 131 - 0.000 0.358 14.217