• ENSG00000165113
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000165113

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000376365 ENSG00000165113 HEK293_OSMI2_6hA HEK293_TMG_6hB GKAP1 protein_coding protein_coding 4.367239 2.949461 7.194974 0.4302301 0.2368163 1.283659 1.73886494 1.2037126 3.6306430 0.16332447 0.1946155 1.584766 0.37995833 0.41366667 0.50673333 0.093066667 0.681665268 0.004440697 FALSE  
ENST00000376371 ENSG00000165113 HEK293_OSMI2_6hA HEK293_TMG_6hB GKAP1 protein_coding protein_coding 4.367239 2.949461 7.194974 0.4302301 0.2368163 1.283659 2.15301805 1.2443697 3.0584750 0.28193183 0.3639992 1.290559 0.49183333 0.42023333 0.42270000 0.002466667 1.000000000 0.004440697 FALSE  
ENST00000388782 ENSG00000165113 HEK293_OSMI2_6hA HEK293_TMG_6hB GKAP1 protein_coding nonsense_mediated_decay 4.367239 2.949461 7.194974 0.4302301 0.2368163 1.283659 0.22864759 0.1206507 0.4035352 0.12065073 0.1276737 1.662295 0.05211250 0.03280000 0.05586667 0.023066667 0.719325423 0.004440697 TRUE  
ENST00000491634 ENSG00000165113 HEK293_OSMI2_6hA HEK293_TMG_6hB GKAP1 protein_coding processed_transcript 4.367239 2.949461 7.194974 0.4302301 0.2368163 1.283659 0.07519759 0.1920213 0.0000000 0.08747778 0.0000000 -4.336435 0.02669583 0.07746667 0.00000000 -0.077466667 0.004440697 0.004440697    
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_6hBColumn filter
HEK293_OSMI2_6hAColumn filter
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hBColumn filter
ENSG00000165113 E001 4.6703491 0.0157664601 0.8181819379 0.906994473 9 83739425 83739503 79 - 0.727 0.762 0.143
ENSG00000165113 E002 35.5568257 0.0012624115 0.8849806032 0.943895018 9 83739504 83739744 241 - 1.534 1.544 0.034
ENSG00000165113 E003 32.6932108 0.0013306326 0.8759784180 0.939244386 9 83741952 83742029 78 - 1.497 1.507 0.036
ENSG00000165113 E004 31.7395064 0.0015124945 0.7838882718 0.886881782 9 83742530 83742600 71 - 1.491 1.474 -0.059
ENSG00000165113 E005 37.0029626 0.0232265990 0.5988696509 0.769477497 9 83748309 83748372 64 - 1.560 1.514 -0.155
ENSG00000165113 E006 2.0085946 0.0464971870 0.2093532688 0.441115166 9 83748373 83749155 783 - 0.362 0.590 1.149
ENSG00000165113 E007 43.7502872 0.0013268147 0.6311847838 0.791172949 9 83753258 83753359 102 - 1.626 1.600 -0.088
ENSG00000165113 E008 19.5998148 0.0120830712 0.8710288794 0.936502774 9 83768818 83768916 99 - 1.289 1.272 -0.059
ENSG00000165113 E009 11.4055525 0.0408152927 0.5401994108 0.729136557 9 83768917 83768970 54 - 1.093 1.005 -0.321
ENSG00000165113 E010 18.5898859 0.0130723788 0.6982407884 0.834428845 9 83780382 83780404 23 - 1.282 1.247 -0.124
ENSG00000165113 E011 31.2719031 0.0015717257 0.1088848771 0.297209022 9 83784715 83784793 79 - 1.512 1.405 -0.366
ENSG00000165113 E012 28.2852466 0.0272141108 0.0271752100 0.118820177 9 83784794 83784838 45 - 1.494 1.263 -0.801
ENSG00000165113 E013 34.4098799 0.0097608721 0.5300313014 0.722108172 9 83788601 83788678 78 - 1.531 1.481 -0.172
ENSG00000165113 E014 1.3982084 0.2332808388 0.0007444467 0.007814574 9 83788679 83789105 427 - 0.000 0.695 13.958
ENSG00000165113 E015 4.0391609 0.1050835498 0.6849970165 0.825918891 9 83792951 83793017 67 - 0.666 0.752 0.353
ENSG00000165113 E016 44.0287533 0.0009986398 0.9492480147 0.976728965 9 83799185 83799328 144 - 1.621 1.625 0.014
ENSG00000165113 E017 25.8605238 0.0222475851 0.2157053934 0.448287921 9 83806302 83806354 53 - 1.358 1.468 0.380
ENSG00000165113 E018 38.1812976 0.0011927451 0.4725693281 0.681927114 9 83806355 83806560 206 - 1.548 1.590 0.143
ENSG00000165113 E019 16.0818764 0.0021389950 0.1790586295 0.402721253 9 83816996 83817127 132 - 1.167 1.283 0.413
ENSG00000165113 E020 0.0000000       9 83817232 83817516 285 -      
ENSG00000165113 E021 8.7656718 0.0168579607 0.0009456980 0.009468856 9 83817517 83817744 228 - 0.807 1.198 1.450
ENSG00000165113 E022 0.9518539 0.0162498974 0.0091067271   9 83817745 83817769 25 - 0.085 0.531 3.466
ENSG00000165113 E023 0.1308682 0.0326491905 0.2188631491   9 83817985 83818121 137 - 0.000 0.170 10.911
ENSG00000165113 E024 0.0000000       9 83829061 83829135 75 -      
ENSG00000165113 E025 0.0000000       9 83829470 83829516 47 -