ENSG00000164068

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000327697 ENSG00000164068 HEK293_OSMI2_6hA HEK293_TMG_6hB RNF123 protein_coding protein_coding 32.9387 49.13002 20.75882 3.798547 0.3890167 -1.242479 16.189249 26.189714 9.625696 3.8625664 0.89619964 -1.4430903 0.49115417 0.52970000 0.46236667 -0.06733333 8.103761e-01 1.680768e-18 FALSE TRUE
ENST00000433785 ENSG00000164068 HEK293_OSMI2_6hA HEK293_TMG_6hB RNF123 protein_coding protein_coding 32.9387 49.13002 20.75882 3.798547 0.3890167 -1.242479 3.898723 5.736926 0.000000 1.1138339 0.00000000 -9.1666466 0.08924167 0.11490000 0.00000000 -0.11490000 1.680768e-18 1.680768e-18 FALSE TRUE
ENST00000454491 ENSG00000164068 HEK293_OSMI2_6hA HEK293_TMG_6hB RNF123 protein_coding protein_coding 32.9387 49.13002 20.75882 3.798547 0.3890167 -1.242479 3.412596 4.638118 1.875207 0.3834611 0.21575842 -1.3019239 0.11209583 0.09473333 0.09053333 -0.00420000 9.691175e-01 1.680768e-18   FALSE
ENST00000487805 ENSG00000164068 HEK293_OSMI2_6hA HEK293_TMG_6hB RNF123 protein_coding retained_intron 32.9387 49.13002 20.75882 3.798547 0.3890167 -1.242479 1.868145 2.304062 2.110048 0.9146216 0.09764415 -0.1263304 0.06385833 0.04816667 0.10176667 0.05360000 3.516297e-01 1.680768e-18 FALSE TRUE
ENST00000498376 ENSG00000164068 HEK293_OSMI2_6hA HEK293_TMG_6hB RNF123 protein_coding retained_intron 32.9387 49.13002 20.75882 3.798547 0.3890167 -1.242479 1.665890 2.277962 1.435213 0.6376568 0.37672146 -0.6627814 0.05094167 0.04536667 0.06980000 0.02443333 7.741094e-01 1.680768e-18   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000164068 E001 2.8677084 0.0135089709 9.229549e-01 9.638070e-01 3 49689538 49689542 5 + 0.567 0.567 0.001
ENSG00000164068 E002 3.5524768 0.0070531601 3.299493e-01 5.689167e-01 3 49689543 49689543 1 + 0.725 0.590 -0.574
ENSG00000164068 E003 13.0606497 0.0028215884 3.740752e-02 1.480204e-01 3 49689544 49689555 12 + 1.234 1.050 -0.659
ENSG00000164068 E004 14.6598274 0.0021205654 1.825203e-02 8.986154e-02 3 49689556 49689556 1 + 1.286 1.086 -0.708
ENSG00000164068 E005 16.5626278 0.0020411869 8.563682e-03 5.188640e-02 3 49689557 49689561 5 + 1.342 1.132 -0.743
ENSG00000164068 E006 17.2780636 0.0022123997 6.683067e-03 4.311421e-02 3 49689562 49689564 3 + 1.363 1.150 -0.751
ENSG00000164068 E007 17.4807978 0.0021422964 8.040112e-03 4.949418e-02 3 49689565 49689565 1 + 1.363 1.156 -0.730
ENSG00000164068 E008 65.2606291 0.0005465765 2.085237e-07 7.153965e-06 3 49689566 49689606 41 + 1.921 1.701 -0.742
ENSG00000164068 E009 27.2643352 0.0038535169 8.660668e-01 9.337696e-01 3 49689607 49689822 216 + 1.373 1.407 0.116
ENSG00000164068 E010 96.0344347 0.0004907097 8.293411e-07 2.411664e-05 3 49691130 49691165 36 + 2.055 1.883 -0.579
ENSG00000164068 E011 143.1705105 0.0025561783 2.902113e-06 7.224268e-05 3 49691166 49691247 82 + 2.221 2.057 -0.548
ENSG00000164068 E012 149.9324910 0.0033762621 1.743215e-05 3.398440e-04 3 49691425 49691509 85 + 2.234 2.078 -0.523
ENSG00000164068 E013 4.7670600 0.0059265366 1.030355e-02 5.942954e-02 3 49697045 49697142 98 + 0.932 0.591 -1.378
ENSG00000164068 E014 163.9929912 0.0026295984 1.132040e-07 4.145029e-06 3 49697143 49697222 80 + 2.290 2.109 -0.603
ENSG00000164068 E015 158.9996172 0.0044023498 1.464075e-05 2.918578e-04 3 49697363 49697457 95 + 2.267 2.098 -0.564
ENSG00000164068 E016 133.3989491 0.0022403382 1.033093e-06 2.922100e-05 3 49697885 49697939 55 + 2.193 2.020 -0.580
ENSG00000164068 E017 151.0588843 0.0047629375 8.893953e-04 9.007084e-03 3 49698052 49698137 86 + 2.218 2.085 -0.444
ENSG00000164068 E018 158.6276392 0.0006011945 1.203869e-02 6.660517e-02 3 49698440 49698526 87 + 2.193 2.131 -0.209
ENSG00000164068 E019 144.2106163 0.0003834899 6.903130e-01 8.292897e-01 3 49698755 49698822 68 + 2.102 2.108 0.021
ENSG00000164068 E020 181.3741305 0.0025002611 4.478463e-01 6.641042e-01 3 49698980 49699105 126 + 2.169 2.216 0.158
ENSG00000164068 E021 163.6923437 0.0004238238 5.586963e-01 7.423420e-01 3 49699468 49699582 115 + 2.134 2.173 0.132
ENSG00000164068 E022 164.5491697 0.0003235498 3.507027e-01 5.878669e-01 3 49699668 49699772 105 + 2.173 2.164 -0.030
ENSG00000164068 E023 20.9058353 0.0650342595 2.186382e-03 1.831399e-02 3 49699773 49700226 454 + 1.539 1.145 -1.375
ENSG00000164068 E024 171.1566977 0.0008489296 1.569581e-01 3.721999e-01 3 49700227 49700352 126 + 2.201 2.173 -0.093
ENSG00000164068 E025 10.8344692 0.1037113776 1.134275e-01 3.048651e-01 3 49700353 49700471 119 + 1.176 0.952 -0.817
ENSG00000164068 E026 93.5802112 0.0005364810 6.915824e-01 8.301169e-01 3 49700472 49700499 28 + 1.892 1.929 0.123
ENSG00000164068 E027 122.2153623 0.0003223990 8.856013e-01 9.443036e-01 3 49700500 49700564 65 + 2.019 2.044 0.086
ENSG00000164068 E028 142.0250635 0.0003068632 1.313825e-01 3.339882e-01 3 49700636 49700709 74 + 2.124 2.093 -0.102
ENSG00000164068 E029 168.3998351 0.0003064573 9.343509e-02 2.700885e-01 3 49701491 49701608 118 + 2.198 2.166 -0.106
ENSG00000164068 E030 159.4614678 0.0003630255 3.329405e-01 5.715899e-01 3 49701811 49701910 100 + 2.161 2.150 -0.035
ENSG00000164068 E031 5.0799712 0.1328697448 8.881497e-02 2.615902e-01 3 49701911 49702082 172 + 0.930 0.638 -1.167
ENSG00000164068 E032 126.5698233 0.0074908911 9.346360e-01 9.695535e-01 3 49702083 49702144 62 + 2.037 2.056 0.061
ENSG00000164068 E033 140.5651686 0.0053430824 9.907456e-01 9.970985e-01 3 49702334 49702405 72 + 2.080 2.102 0.076
ENSG00000164068 E034 175.8468925 0.0008041604 3.303527e-01 5.693039e-01 3 49702633 49702753 121 + 2.154 2.206 0.174
ENSG00000164068 E035 169.5810820 0.0028028832 6.629844e-02 2.167402e-01 3 49703427 49703528 102 + 2.105 2.201 0.319
ENSG00000164068 E036 199.1965445 0.0038176271 9.403951e-02 2.712308e-01 3 49704650 49704756 107 + 2.179 2.270 0.304
ENSG00000164068 E037 20.4018793 0.1799738774 2.377852e-01 4.740057e-01 3 49704757 49704983 227 + 1.402 1.221 -0.635
ENSG00000164068 E038 162.1439221 0.0036443720 1.020837e-01 2.855051e-01 3 49704984 49705081 98 + 2.090 2.183 0.310
ENSG00000164068 E039 175.7087636 0.0021729059 1.393470e-01 3.465199e-01 3 49705082 49705182 101 + 2.137 2.215 0.261
ENSG00000164068 E040 6.8225733 0.0381082564 2.065625e-01 4.375968e-01 3 49705183 49705186 4 + 0.960 0.793 -0.639
ENSG00000164068 E041 211.4825912 0.0007364127 2.050221e-01 4.359470e-01 3 49705534 49705679 146 + 2.232 2.292 0.199
ENSG00000164068 E042 35.0266075 0.1163166180 2.673207e-02 1.174724e-01 3 49705680 49705981 302 + 1.712 1.394 -1.090
ENSG00000164068 E043 202.0138450 0.0002433518 3.691170e-02 1.467095e-01 3 49705982 49706065 84 + 2.282 2.244 -0.127
ENSG00000164068 E044 237.9745900 0.0002215875 1.595961e-01 3.761862e-01 3 49706791 49706898 108 + 2.336 2.320 -0.055
ENSG00000164068 E045 177.7539783 0.0002941112 3.198744e-01 5.595709e-01 3 49712479 49712549 71 + 2.207 2.197 -0.032
ENSG00000164068 E046 216.0815194 0.0002908893 7.015346e-01 8.365975e-01 3 49712550 49712656 107 + 2.276 2.286 0.032
ENSG00000164068 E047 33.1815763 0.1138046487 3.226656e-02 1.340243e-01 3 49712657 49712829 173 + 1.681 1.378 -1.037
ENSG00000164068 E048 27.2104893 0.0541418129 4.224112e-02 1.605415e-01 3 49712830 49712892 63 + 1.550 1.326 -0.774
ENSG00000164068 E049 71.2556037 0.1294144466 9.005265e-02 2.638864e-01 3 49712893 49713512 620 + 1.946 1.739 -0.697
ENSG00000164068 E050 127.6684848 0.0015162723 3.777158e-01 6.103300e-01 3 49713513 49713526 14 + 2.012 2.066 0.182
ENSG00000164068 E051 181.6979259 0.0004852608 4.296721e-02 1.624456e-01 3 49713527 49713587 61 + 2.143 2.227 0.282
ENSG00000164068 E052 192.0691817 0.0002253857 6.265652e-01 7.882579e-01 3 49713738 49713825 88 + 2.207 2.241 0.116
ENSG00000164068 E053 7.2182189 0.0285530132 1.364312e-02 7.294846e-02 3 49713826 49713909 84 + 1.088 0.765 -1.223
ENSG00000164068 E054 168.7994980 0.0002503214 5.320161e-02 1.872628e-01 3 49713910 49713997 88 + 2.115 2.197 0.274
ENSG00000164068 E055 181.4057598 0.0002519614 1.748444e-02 8.723883e-02 3 49714090 49714174 85 + 2.136 2.230 0.315
ENSG00000164068 E056 0.1779838 0.0373018162 1.596231e-01   3 49715492 49715574 83 + 0.187 0.000 -10.364
ENSG00000164068 E057 254.7659416 0.0010218242 4.102631e-03 2.974263e-02 3 49715575 49715714 140 + 2.271 2.377 0.353
ENSG00000164068 E058 264.5319773 0.0039107032 5.750526e-02 1.971717e-01 3 49715822 49716010 189 + 2.297 2.390 0.310
ENSG00000164068 E059 3.2941093 0.2042769488 8.525532e-01 9.264971e-01 3 49716011 49716043 33 + 0.568 0.595 0.124
ENSG00000164068 E060 165.6920155 0.0004473999 9.045030e-05 1.374299e-03 3 49716102 49716177 76 + 2.051 2.204 0.513
ENSG00000164068 E061 171.8541876 0.0017173429 3.708672e-06 8.896366e-05 3 49716393 49716477 85 + 2.033 2.229 0.656
ENSG00000164068 E062 4.8661902 0.2757885923 8.661349e-01 9.338312e-01 3 49718104 49718262 159 + 0.754 0.713 -0.167
ENSG00000164068 E063 5.6778596 0.2124934752 6.678476e-01 8.148371e-01 3 49718392 49718604 213 + 0.676 0.809 0.538
ENSG00000164068 E064 127.7325748 0.8946203265 3.107094e-01 5.511801e-01 3 49720511 49720558 48 + 1.817 2.113 0.992
ENSG00000164068 E065 172.6183544 1.0494243734 3.756731e-01 6.087472e-01 3 49720559 49720653 95 + 1.977 2.237 0.871
ENSG00000164068 E066 2.7740221 0.0096867985 8.466117e-01 9.230670e-01 3 49720654 49720799 146 + 0.499 0.546 0.225
ENSG00000164068 E067 188.5140701 1.0759428219 3.691647e-01 6.033827e-01 3 49720800 49720894 95 + 2.009 2.276 0.895
ENSG00000164068 E068 13.0940349 0.0210564079 3.355338e-01 5.740385e-01 3 49720895 49721019 125 + 1.004 1.136 0.479
ENSG00000164068 E069 209.3073249 1.1385860173 4.084024e-01 6.348154e-01 3 49721020 49721105 86 + 2.079 2.316 0.794
ENSG00000164068 E070 6.9130461 0.2229162295 3.408813e-01 5.788311e-01 3 49721106 49721184 79 + 0.678 0.892 0.851
ENSG00000164068 E071 323.3352513 1.3127487973 4.492872e-01 6.652318e-01 3 49721185 49721529 345 + 2.280 2.502 0.738