ENSG00000163913

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000349441 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding protein_coding 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 0.98050650 1.8618754 0.8424873 0.3101778 0.4659112 -1.1347342 0.07844583 0.12776667 0.08466667 -0.043100000 8.338188e-01 1.117516e-05 FALSE  
ENST00000513190 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding retained_intron 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 0.80318559 0.9185429 0.7994819 0.2691058 0.1197488 -0.1979697 0.06489167 0.06150000 0.08006667 0.018566667 8.407585e-01 1.117516e-05 TRUE  
ENST00000687864 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding retained_intron 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 0.82126346 0.9365574 0.3336930 0.6744049 0.3336930 -1.4615694 0.06732083 0.06050000 0.03470000 -0.025800000 7.857036e-01 1.117516e-05 TRUE  
ENST00000688504 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding retained_intron 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 0.08805963 0.0000000 0.7044770 0.0000000 0.2477671 6.1588157 0.00861250 0.00000000 0.06890000 0.068900000 1.117516e-05 1.117516e-05 TRUE  
ENST00000689005 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding protein_coding 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 0.69377901 0.8913832 0.4511028 0.2819157 0.3961075 -0.9670523 0.05270833 0.06246667 0.04353333 -0.018933333 7.387799e-01 1.117516e-05 FALSE  
ENST00000689492 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding protein_coding 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 1.89263992 2.6181243 1.8087816 0.6289160 0.3368228 -0.5310612 0.15238750 0.17626667 0.17890000 0.002633333 1.000000e+00 1.117516e-05 FALSE  
ENST00000690209 ENSG00000163913 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT122 protein_coding nonsense_mediated_decay 12.51829 14.76049 10.06802 0.6729507 0.2403938 -0.5515063 0.12683496 0.0000000 0.5308812 0.0000000 0.2851419 5.7572398 0.01214167 0.00000000 0.05256667 0.052566667 2.326011e-01 1.117516e-05 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000163913 E001 0.0000000       3 129429607 129429673 67 +      
ENSG00000163913 E002 0.0000000       3 129429674 129429818 145 +      
ENSG00000163913 E003 0.0000000       3 129433090 129433232 143 +      
ENSG00000163913 E004 0.0000000       3 129440036 129440056 21 +      
ENSG00000163913 E005 0.3337900 0.0289563283 6.837912e-01   3 129440057 129440104 48 + 0.154 0.095 -0.804
ENSG00000163913 E006 0.3337900 0.0289563283 6.837912e-01   3 129440105 129440115 11 + 0.154 0.095 -0.804
ENSG00000163913 E007 0.6675801 0.5112254139 6.884127e-01   3 129440116 129440124 9 + 0.269 0.176 -0.783
ENSG00000163913 E008 0.6675801 0.5112254139 6.884127e-01   3 129440125 129440126 2 + 0.269 0.176 -0.783
ENSG00000163913 E009 0.6675801 0.5112254139 6.884127e-01   3 129440127 129440133 7 + 0.269 0.176 -0.783
ENSG00000163913 E010 0.9528494 0.0741067970 1.640848e-01   3 129440134 129440138 5 + 0.431 0.173 -1.793
ENSG00000163913 E011 1.4104930 0.3960992330 2.223263e-01 0.4562618715 3 129440139 129440151 13 + 0.542 0.243 -1.731
ENSG00000163913 E012 2.3202205 0.2441473264 8.191733e-01 0.9075958083 3 129440152 129440163 12 + 0.545 0.502 -0.201
ENSG00000163913 E013 2.6352296 0.3455943447 7.930403e-01 0.8922162700 3 129440164 129440171 8 + 0.590 0.535 -0.254
ENSG00000163913 E014 5.4938503 0.1372250171 8.418003e-02 0.2531423012 3 129440172 129440203 32 + 0.991 0.646 -1.359
ENSG00000163913 E015 5.3083044 0.0618078823 1.194317e-02 0.0662085179 3 129440204 129440211 8 + 1.012 0.594 -1.664
ENSG00000163913 E016 6.9151870 0.0288121161 5.851995e-03 0.0390124590 3 129440212 129440219 8 + 1.094 0.712 -1.460
ENSG00000163913 E017 6.8514330 0.0049488541 5.278638e-03 0.0360709078 3 129440220 129440223 4 + 1.066 0.732 -1.276
ENSG00000163913 E018 8.4675430 0.0049675640 9.493515e-03 0.0559312107 3 129440224 129440227 4 + 1.126 0.836 -1.076
ENSG00000163913 E019 8.7064342 0.0041333915 2.537557e-03 0.0205771868 3 129440228 129440228 1 + 1.153 0.821 -1.233
ENSG00000163913 E020 8.5755661 0.0046183413 1.740858e-03 0.0152997820 3 129440229 129440229 1 + 1.153 0.805 -1.297
ENSG00000163913 E021 8.7182007 0.0045431196 1.080167e-03 0.0105326823 3 129440230 129440232 3 + 1.165 0.805 -1.342
ENSG00000163913 E022 11.6433154 0.0227962357 1.518795e-03 0.0137421479 3 129440233 129440243 11 + 1.285 0.910 -1.361
ENSG00000163913 E023 12.2452591 0.0195095410 2.822391e-04 0.0035504221 3 129440244 129440246 3 + 1.322 0.909 -1.494
ENSG00000163913 E024 12.2452591 0.0195095410 2.822391e-04 0.0035504221 3 129440247 129440248 2 + 1.322 0.909 -1.494
ENSG00000163913 E025 17.9505241 0.0022133112 7.546634e-06 0.0001642435 3 129440249 129440260 12 + 1.458 1.096 -1.272
ENSG00000163913 E026 22.3194901 0.0021301412 2.711381e-05 0.0004941564 3 129440261 129440281 21 + 1.524 1.214 -1.075
ENSG00000163913 E027 32.8295062 0.0026688614 2.139507e-03 0.0180084277 3 129440282 129440315 34 + 1.627 1.430 -0.674
ENSG00000163913 E028 34.7402495 0.0011222972 8.585669e-03 0.0519801787 3 129440316 129440330 15 + 1.631 1.474 -0.537
ENSG00000163913 E029 32.9998379 0.0011640875 4.451074e-02 0.1663940245 3 129440331 129440332 2 + 1.590 1.467 -0.423
ENSG00000163913 E030 43.8475452 0.0008571274 2.557393e-02 0.1139876178 3 129440333 129440371 39 + 1.707 1.587 -0.408
ENSG00000163913 E031 0.7254668 0.0415662324 6.389383e-01   3 129440592 129441456 865 + 0.154 0.240 0.786
ENSG00000163913 E032 0.3337900 0.0289563283 6.837912e-01   3 129449870 129449870 1 + 0.154 0.095 -0.804
ENSG00000163913 E033 50.7204002 0.0022448702 3.739841e-02 0.1479996585 3 129449871 129449937 67 + 1.761 1.649 -0.379
ENSG00000163913 E034 0.0000000       3 129451869 129451913 45 +      
ENSG00000163913 E035 49.1143189 0.0033427815 4.681871e-01 0.6788540394 3 129451914 129451972 59 + 1.703 1.662 -0.139
ENSG00000163913 E036 37.7776471 0.0063656162 7.321082e-01 0.8554872100 3 129451973 129451998 26 + 1.545 1.571 0.089
ENSG00000163913 E037 9.1116714 0.1482333093 1.887409e-02 0.0919992905 3 129451999 129453596 1598 + 1.208 0.770 -1.630
ENSG00000163913 E038 4.4376367 0.2356414355 6.370232e-01 0.7950573490 3 129455103 129455886 784 + 0.752 0.710 -0.172
ENSG00000163913 E039 1.9326079 0.3945753987 2.877108e-01 0.5284265792 3 129455887 129456078 192 + 0.614 0.305 -1.615
ENSG00000163913 E040 0.6951069 0.5360535464 8.678455e-01   3 129456079 129456113 35 + 0.156 0.244 0.794
ENSG00000163913 E041 4.4821618 0.4683166919 5.091781e-01 0.7073111916 3 129456114 129456264 151 + 0.794 0.669 -0.514
ENSG00000163913 E042 0.9523018 0.0153787590 1.947167e-02   3 129457922 129457925 4 + 0.496 0.095 -3.129
ENSG00000163913 E043 1.4060013 0.0548803984 1.783444e-02 0.0884756479 3 129457926 129457973 48 + 0.601 0.172 -2.628
ENSG00000163913 E044 1.4169600 0.0131896068 7.011688e-02 0.2250297164 3 129457974 129458015 42 + 0.551 0.238 -1.808
ENSG00000163913 E045 2.6236532 0.0181550552 2.826307e-01 0.5230637487 3 129458016 129458598 583 + 0.645 0.470 -0.809
ENSG00000163913 E046 42.1316158 0.0038081191 6.610722e-01 0.8105853207 3 129458599 129458677 79 + 1.627 1.600 -0.090
ENSG00000163913 E047 1.0230998 0.0796371863 5.033050e-02   3 129459315 129459451 137 + 0.000 0.394 13.136
ENSG00000163913 E048 4.4985465 0.0287637754 2.562062e-01 0.4949657366 3 129460854 129461006 153 + 0.818 0.646 -0.700
ENSG00000163913 E049 1.1657345 0.0686944807 2.201637e-01   3 129461171 129461227 57 + 0.154 0.394 1.794
ENSG00000163913 E050 39.9896135 0.0058653137 1.143384e-01 0.3063726444 3 129461228 129461304 77 + 1.649 1.547 -0.349
ENSG00000163913 E051 0.8399544 0.7029492153 8.474517e-01   3 129461309 129461501 193 + 0.269 0.244 -0.184
ENSG00000163913 E052 0.9815936 0.0163115324 4.005022e-02   3 129463121 129463559 439 + 0.000 0.392 13.332
ENSG00000163913 E053 56.5014311 0.0034672845 4.764312e-02 0.1741513392 3 129463560 129463626 67 + 1.801 1.694 -0.362
ENSG00000163913 E054 58.8152774 0.0006968152 5.733187e-02 0.1967956151 3 129464635 129464781 147 + 1.810 1.721 -0.302
ENSG00000163913 E055 0.3088520 0.0286066682 6.809210e-01   3 129464782 129464792 11 + 0.154 0.095 -0.809
ENSG00000163913 E056 0.7491197 0.0188181779 4.340081e-01   3 129466890 129466901 12 + 0.154 0.296 1.194
ENSG00000163913 E057 1.9831065 0.0129894764 4.835921e-01 0.6894915163 3 129466902 129467066 165 + 0.551 0.432 -0.583
ENSG00000163913 E058 31.7800256 0.0010976135 2.958915e-02 0.1261401339 3 129469342 129469343 2 + 1.581 1.445 -0.466
ENSG00000163913 E059 60.2115007 0.0006430685 8.337923e-03 0.0508738252 3 129469344 129469417 74 + 1.840 1.718 -0.411
ENSG00000163913 E060 0.6901176 0.0332366298 6.336554e-01   3 129476139 129476314 176 + 0.154 0.239 0.788
ENSG00000163913 E061 53.2583078 0.0008432819 3.751435e-03 0.0277522163 3 129476315 129476372 58 + 1.798 1.655 -0.483
ENSG00000163913 E062 48.2369379 0.0007558170 8.214928e-02 0.2490025135 3 129476373 129476425 53 + 1.728 1.638 -0.304
ENSG00000163913 E063 55.1326822 0.0011047199 2.565477e-01 0.4953150247 3 129476426 129476506 81 + 1.768 1.712 -0.188
ENSG00000163913 E064 3.2284002 0.3633188779 8.222384e-01 0.9092655424 3 129476507 129476662 156 + 0.492 0.671 0.813
ENSG00000163913 E065 82.5188220 0.0006616733 7.840847e-01 0.8869354700 3 129476663 129476801 139 + 1.893 1.905 0.040
ENSG00000163913 E066 81.5946543 0.0059284486 9.109862e-01 0.9576497757 3 129478016 129478143 128 + 1.901 1.896 -0.019
ENSG00000163913 E067 70.1834677 0.0115969174 4.672503e-01 0.6782153432 3 129478144 129478218 75 + 1.868 1.817 -0.173
ENSG00000163913 E068 2.6897923 0.0084516828 6.929902e-01 0.8310547788 3 129479766 129479784 19 + 0.600 0.537 -0.289
ENSG00000163913 E069 90.9114198 0.0004993626 5.929295e-01 0.7655729329 3 129479785 129479922 138 + 1.929 1.950 0.071
ENSG00000163913 E070 0.0000000       3 129481381 129481508 128 +      
ENSG00000163913 E071 0.2027342 0.0359362883 8.146092e-01   3 129481509 129481529 21 + 0.000 0.095 10.808
ENSG00000163913 E072 81.2475127 0.0005329643 9.270755e-01 0.9655908756 3 129481530 129481669 140 + 1.891 1.895 0.014
ENSG00000163913 E073 33.4175219 0.0011172401 3.698585e-01 0.6038763511 3 129481670 129481694 25 + 1.551 1.495 -0.190
ENSG00000163913 E074 84.4620124 0.0068186631 1.818922e-01 0.4064575172 3 129483485 129483682 198 + 1.863 1.940 0.260
ENSG00000163913 E075 0.0000000       3 129483683 129483892 210 +      
ENSG00000163913 E076 0.0000000       3 129487506 129487786 281 +      
ENSG00000163913 E077 0.0000000       3 129487787 129487927 141 +      
ENSG00000163913 E078 0.0000000       3 129488050 129488050 1 +      
ENSG00000163913 E079 0.0000000       3 129488051 129488222 172 +      
ENSG00000163913 E080 0.3393995 0.0247275966 8.790733e-02   3 129488223 129488256 34 + 0.268 0.000 -13.832
ENSG00000163913 E081 73.6418962 0.0015703694 5.196072e-01 0.7147838639 3 129488257 129488397 141 + 1.835 1.865 0.102
ENSG00000163913 E082 54.3685651 0.0010485164 4.534264e-01 0.6682944985 3 129492141 129492194 54 + 1.699 1.738 0.131
ENSG00000163913 E083 0.4756169 0.0255271037 2.112165e-01   3 129492853 129492932 80 + 0.000 0.239 12.367
ENSG00000163913 E084 3.4050853 0.0563929001 5.280374e-01 0.7206346519 3 129492933 129494230 1298 + 0.552 0.669 0.516
ENSG00000163913 E085 2.6079222 0.2072892286 5.910643e-01 0.7644340520 3 129494231 129495445 1215 + 0.435 0.579 0.698
ENSG00000163913 E086 64.9861339 0.0078955944 1.405514e-01 0.3483741370 3 129495446 129495508 63 + 1.736 1.832 0.323
ENSG00000163913 E087 78.2100581 0.0044552984 1.693187e-01 0.3896801745 3 129495509 129495607 99 + 1.827 1.902 0.252
ENSG00000163913 E088 7.6703447 0.0794377530 8.858721e-01 0.9444686444 3 129496577 129497250 674 + 0.895 0.925 0.114
ENSG00000163913 E089 1.8994876 0.9483024550 6.971146e-01 0.8336754414 3 129498840 129499901 1062 + 0.672 0.237 -2.352
ENSG00000163913 E090 100.3962665 0.0008603252 4.717670e-01 0.6813471654 3 129499902 129500068 167 + 1.965 1.993 0.094
ENSG00000163913 E091 98.0167823 0.0004349394 4.590089e-01 0.6724900347 3 129502711 129502882 172 + 1.959 1.987 0.094
ENSG00000163913 E092 3.3038216 0.0872489916 9.465730e-02 0.2723639194 3 129503524 129503685 162 + 0.356 0.702 1.664
ENSG00000163913 E093 3.5280993 0.1576306164 8.633867e-02 0.2570978678 3 129503978 129504318 341 + 0.822 0.475 -1.504
ENSG00000163913 E094 68.9953013 0.0006088856 4.840646e-01 0.6898385776 3 129504319 129504421 103 + 1.807 1.838 0.106
ENSG00000163913 E095 0.6486114 0.0189300202 6.330610e-01   3 129504775 129505152 378 + 0.154 0.239 0.782
ENSG00000163913 E096 0.1308682 0.0316726126 8.154656e-01   3 129505153 129505211 59 + 0.000 0.095 10.818
ENSG00000163913 E097 0.1308682 0.0316726126 8.154656e-01   3 129505212 129505291 80 + 0.000 0.095 10.818
ENSG00000163913 E098 0.4812263 0.0217681645 9.341996e-01   3 129505292 129505368 77 + 0.154 0.173 0.193
ENSG00000163913 E099 1.1486188 0.0142022869 6.676923e-01   3 129505369 129505417 49 + 0.268 0.346 0.516
ENSG00000163913 E100 1.5484778 0.0126126181 8.851456e-02 0.2610308850 3 129505418 129505748 331 + 0.154 0.471 2.198
ENSG00000163913 E101 2.8078234 0.2495776269 3.649985e-01 0.5999509674 3 129505749 129506408 660 + 0.362 0.635 1.352
ENSG00000163913 E102 81.7953466 0.0020256839 4.317939e-02 0.1630174977 3 129506409 129506549 141 + 1.837 1.931 0.314
ENSG00000163913 E103 0.2617363 0.2599930646 4.796523e-01   3 129506550 129506717 168 + 0.000 0.168 11.205
ENSG00000163913 E104 1.2185795 0.0670379149 1.645892e-01   3 129506718 129506836 119 + 0.155 0.430 1.982
ENSG00000163913 E105 0.9636204 0.0176024493 8.733750e-01   3 129506837 129507664 828 + 0.268 0.296 0.199
ENSG00000163913 E106 12.9317711 0.0055401494 4.403811e-01 0.6589787173 3 129507665 129507667 3 + 1.067 1.145 0.284
ENSG00000163913 E107 67.3442924 0.0039792504 4.882706e-02 0.1768460613 3 129507668 129507762 95 + 1.744 1.851 0.361
ENSG00000163913 E108 50.2379462 0.0007338256 9.206126e-02 0.2675425857 3 129512312 129512357 46 + 1.631 1.720 0.302
ENSG00000163913 E109 50.7896312 0.0007150695 2.539997e-01 0.4923804784 3 129512358 129512410 53 + 1.652 1.712 0.203
ENSG00000163913 E110 25.1212551 0.0013897828 9.971436e-01 1.0000000000 3 129512411 129512412 2 + 1.396 1.397 0.003
ENSG00000163913 E111 54.2356079 0.0975030868 3.930748e-01 0.6228474731 3 129512413 129514388 1976 + 1.779 1.689 -0.307
ENSG00000163913 E112 82.0396568 0.0006959264 1.645675e-03 0.0146397870 3 129514389 129514554 166 + 1.807 1.942 0.454
ENSG00000163913 E113 37.3683841 0.0986214012 7.542415e-01 0.8692623791 3 129514555 129515310 756 + 1.572 1.563 -0.030
ENSG00000163913 E114 6.0532470 0.1308408692 3.325809e-01 0.5713066809 3 129515311 129515399 89 + 0.685 0.908 0.884
ENSG00000163913 E115 3.9670434 0.0494490769 5.813920e-02 0.1986034660 3 129515400 129515469 70 + 0.433 0.784 1.573
ENSG00000163913 E116 1.9107223 0.0106491984 2.655884e-02 0.1169562663 3 129515470 129515487 18 + 0.154 0.566 2.653
ENSG00000163913 E117 30.8437066 0.0029139902 5.810860e-03 0.0388006779 3 129515488 129515490 3 + 1.349 1.546 0.682
ENSG00000163913 E118 73.2546189 0.0083239323 2.103762e-03 0.0177621182 3 129515491 129515599 109 + 1.717 1.914 0.664
ENSG00000163913 E119 0.4873834 0.2367689858 9.917748e-01   3 129517279 129517280 2 + 0.153 0.174 0.223
ENSG00000163913 E120 2.5615578 0.4187409231 8.161151e-01 0.9059025428 3 129517281 129517468 188 + 0.438 0.578 0.675
ENSG00000163913 E121 91.1899497 0.0063660663 2.634001e-04 0.0033577090 3 129517469 129517594 126 + 1.804 2.010 0.693
ENSG00000163913 E122 6.1409454 0.1018001040 7.269029e-01 0.8523630812 3 129518007 129519106 1100 + 0.790 0.871 0.319
ENSG00000163913 E123 55.6687271 0.0011963594 5.225445e-05 0.0008642391 3 129519107 129519114 8 + 1.586 1.801 0.731
ENSG00000163913 E124 68.9193195 0.0006650377 5.071999e-06 0.0001164920 3 129519115 129519186 72 + 1.676 1.892 0.726
ENSG00000163913 E125 6.3580350 0.0594289461 5.875061e-01 0.7619910110 3 129519187 129519461 275 + 0.789 0.889 0.388
ENSG00000163913 E126 66.2429232 0.0005851570 1.701855e-04 0.0023362233 3 129519568 129519732 165 + 1.684 1.862 0.602
ENSG00000163913 E127 10.0038170 0.1545357511 1.964280e-01 0.4250786478 3 129519733 129520161 429 + 0.794 1.111 1.190
ENSG00000163913 E128 1.3917617 0.0138005336 8.544649e-01 0.9272839576 3 129520162 129520175 14 + 0.358 0.391 0.193
ENSG00000163913 E129 43.3775328 0.0009887748 1.970368e-02 0.0949052028 3 129520176 129520510 335 + 1.535 1.669 0.459