ENSG00000163625

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000295888 ENSG00000163625 HEK293_OSMI2_6hA HEK293_TMG_6hB WDFY3 protein_coding protein_coding 5.484342 5.710428 6.766683 1.517291 0.4304192 0.2444564 1.6889467 1.4351461 1.89300018 0.3438338 0.10453017 0.397060346 0.3111167 0.2547667 0.28066667 0.02590000 8.859069e-01 3.755805e-12 FALSE TRUE
ENST00000425179 ENSG00000163625 HEK293_OSMI2_6hA HEK293_TMG_6hB WDFY3 protein_coding retained_intron 5.484342 5.710428 6.766683 1.517291 0.4304192 0.2444564 0.9901155 2.0357293 0.09131609 0.6445463 0.04719299 -4.335679982 0.2212167 0.3477333 0.01306667 -0.33466667 3.755805e-12 3.755805e-12 FALSE TRUE
ENST00000514711 ENSG00000163625 HEK293_OSMI2_6hA HEK293_TMG_6hB WDFY3 protein_coding protein_coding 5.484342 5.710428 6.766683 1.517291 0.4304192 0.2444564 0.9546292 1.3613043 1.36306691 0.5037756 0.38646828 0.001853226 0.1660667 0.2269667 0.19650000 -0.03046667 9.040264e-01 3.755805e-12 FALSE TRUE
MSTRG.25110.2 ENSG00000163625 HEK293_OSMI2_6hA HEK293_TMG_6hB WDFY3 protein_coding   5.484342 5.710428 6.766683 1.517291 0.4304192 0.2444564 1.2413212 0.7628829 2.48382498 0.1227389 0.10138283 1.690038403 0.2045417 0.1473333 0.36813333 0.22080000 2.902736e-03 3.755805e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000163625 E001 92.5098202 0.8393726070 1.765543e-01 3.991480e-01 4 84669597 84671250 1654 - 1.706 2.189 1.623
ENSG00000163625 E002 78.5601244 0.8495807262 2.739795e-01 5.139401e-01 4 84671251 84672290 1040 - 1.720 2.069 1.176
ENSG00000163625 E003 53.3695238 0.6998061401 2.060405e-01 4.370634e-01 4 84672291 84672631 341 - 1.531 1.920 1.318
ENSG00000163625 E004 85.8666353 0.8430960136 2.124494e-01 4.445978e-01 4 84672632 84672991 360 - 1.715 2.134 1.409
ENSG00000163625 E005 51.5702598 0.0009527366 8.751545e-08 3.290267e-06 4 84677199 84677396 198 - 1.558 1.878 1.084
ENSG00000163625 E006 41.4603282 0.0134829332 1.201521e-01 3.160759e-01 4 84678168 84678279 112 - 1.538 1.719 0.615
ENSG00000163625 E007 70.1183036 0.0169957562 2.386426e-02 1.086777e-01 4 84678919 84679242 324 - 1.738 1.966 0.769
ENSG00000163625 E008 41.7989520 0.0203399086 6.886283e-02 2.225149e-01 4 84682374 84682470 97 - 1.524 1.737 0.723
ENSG00000163625 E009 0.7970432 0.0172671820 3.212955e-01   4 84682471 84682948 478 - 0.305 0.149 -1.314
ENSG00000163625 E010 57.9239501 0.0058096742 9.269133e-02 2.687711e-01 4 84683943 84684125 183 - 1.695 1.849 0.523
ENSG00000163625 E011 51.5190804 0.0010766090 5.824038e-03 3.887339e-02 4 84688086 84688265 180 - 1.626 1.817 0.648
ENSG00000163625 E012 54.2510067 0.0021265843 2.956952e-02 1.260913e-01 4 84690506 84690664 159 - 1.656 1.823 0.564
ENSG00000163625 E013 37.3104588 0.0061406570 1.963629e-01 4.250076e-01 4 84691631 84691725 95 - 1.510 1.651 0.480
ENSG00000163625 E014 34.2263013 0.0013366194 4.040604e-01 6.315810e-01 4 84691726 84691785 60 - 1.495 1.600 0.357
ENSG00000163625 E015 47.9126477 0.0008389283 2.746228e-01 5.146029e-01 4 84692885 84693032 148 - 1.636 1.746 0.374
ENSG00000163625 E016 51.7281959 0.0006824734 1.504900e-01 3.630105e-01 4 84695970 84696182 213 - 1.658 1.783 0.423
ENSG00000163625 E017 32.9353715 0.0013631616 4.538763e-01 6.686269e-01 4 84696732 84696823 92 - 1.474 1.573 0.341
ENSG00000163625 E018 42.9028883 0.0125306309 4.795711e-01 6.868499e-01 4 84702353 84702506 154 - 1.580 1.689 0.370
ENSG00000163625 E019 37.0886885 0.0311157075 6.719172e-01 8.175292e-01 4 84704338 84704444 107 - 1.524 1.622 0.336
ENSG00000163625 E020 48.6819474 0.0066210825 3.863339e-01 6.175662e-01 4 84705394 84705511 118 - 1.634 1.747 0.383
ENSG00000163625 E021 47.4141132 0.0009561044 7.704826e-01 8.789612e-01 4 84708909 84709028 120 - 1.644 1.714 0.237
ENSG00000163625 E022 37.0292021 0.0011213840 2.429616e-01 4.799403e-01 4 84709293 84709347 55 - 1.516 1.639 0.418
ENSG00000163625 E023 39.1172792 0.0021670814 8.201399e-01 9.081572e-01 4 84713159 84713239 81 - 1.561 1.631 0.237
ENSG00000163625 E024 29.3563346 0.0011395941 7.970423e-01 8.945709e-01 4 84715298 84715383 86 - 1.458 1.495 0.126
ENSG00000163625 E025 27.5465263 0.0016064960 2.247470e-01 4.590716e-01 4 84716896 84717016 121 - 1.383 1.518 0.464
ENSG00000163625 E026 30.8064173 0.0012108806 6.556280e-01 8.071209e-01 4 84718422 84718570 149 - 1.481 1.506 0.087
ENSG00000163625 E027 37.3674246 0.0011688956 2.328537e-01 4.684355e-01 4 84721409 84721572 164 - 1.576 1.559 -0.058
ENSG00000163625 E028 36.9611677 0.0188751580 7.535242e-01 8.688485e-01 4 84724426 84724594 169 - 1.556 1.575 0.064
ENSG00000163625 E029 12.3878509 0.0400341548 1.477634e-01 3.591010e-01 4 84726861 84726911 51 - 1.011 1.239 0.820
ENSG00000163625 E030 38.4162732 0.0197909596 1.596595e-01 3.762964e-01 4 84733382 84733609 228 - 1.613 1.533 -0.272
ENSG00000163625 E031 21.6766292 0.0018182280 9.231669e-01 9.638661e-01 4 84735043 84735105 63 - 1.319 1.378 0.206
ENSG00000163625 E032 14.6963916 0.0022795795 4.676868e-01 6.784836e-01 4 84735106 84735120 15 - 1.197 1.185 -0.046
ENSG00000163625 E033 36.4504735 0.0011439154 3.333353e-03 2.538703e-02 4 84736170 84736327 158 - 1.612 1.489 -0.422
ENSG00000163625 E034 42.0278210 0.0014648870 1.405860e-03 1.294234e-02 4 84737184 84737366 183 - 1.668 1.538 -0.443
ENSG00000163625 E035 31.0401784 0.0012009322 2.680254e-01 5.077086e-01 4 84739010 84739119 110 - 1.506 1.489 -0.058
ENSG00000163625 E036 0.0000000       4 84739120 84739330 211 -      
ENSG00000163625 E037 40.8919939 0.0100935496 1.579701e-01 3.736914e-01 4 84740187 84740416 230 - 1.633 1.591 -0.145
ENSG00000163625 E038 25.9310577 0.0178842686 6.288899e-02 2.092148e-01 4 84741761 84741921 161 - 1.469 1.356 -0.390
ENSG00000163625 E039 27.0884764 0.0014276924 1.544859e-02 7.978124e-02 4 84743700 84743799 100 - 1.485 1.370 -0.394
ENSG00000163625 E040 0.0000000       4 84751248 84751482 235 -      
ENSG00000163625 E041 40.4965695 0.0139511990 1.583640e-02 8.121106e-02 4 84751483 84751716 234 - 1.656 1.516 -0.479
ENSG00000163625 E042 32.8974694 0.0048349964 2.996972e-01 5.401081e-01 4 84753697 84753876 180 - 1.527 1.511 -0.056
ENSG00000163625 E043 23.3748850 0.0016371318 2.867445e-01 5.274886e-01 4 84755266 84755400 135 - 1.388 1.363 -0.086
ENSG00000163625 E044 12.9982551 0.0124834941 7.756016e-01 8.821106e-01 4 84756926 84756970 45 - 1.122 1.138 0.057
ENSG00000163625 E045 28.1267503 0.0017358976 1.062323e-01 2.927441e-01 4 84756971 84757161 191 - 1.474 1.414 -0.204
ENSG00000163625 E046 27.9748176 0.0014992227 5.547153e-04 6.172416e-03 4 84765810 84766027 218 - 1.519 1.331 -0.649
ENSG00000163625 E047 22.7683189 0.0015413616 2.610984e-01 5.001411e-01 4 84766252 84766372 121 - 1.378 1.348 -0.106
ENSG00000163625 E048 16.0515324 0.0021488992 8.343343e-01 9.162042e-01 4 84772835 84772929 95 - 1.191 1.260 0.244
ENSG00000163625 E049 24.1844501 0.0020644142 7.856992e-02 2.419222e-01 4 84774820 84774981 162 - 1.423 1.347 -0.262
ENSG00000163625 E050 20.3438101 0.0019372428 7.738280e-03 4.808056e-02 4 84775065 84775138 74 - 1.379 1.218 -0.561
ENSG00000163625 E051 26.3700441 0.0013821160 1.501692e-05 2.985855e-04 4 84778503 84778655 153 - 1.513 1.249 -0.913
ENSG00000163625 E052 28.7198225 0.0014911970 3.569726e-04 4.306469e-03 4 84780108 84780298 191 - 1.526 1.332 -0.671
ENSG00000163625 E053 23.2328592 0.0014877362 1.377915e-03 1.274518e-02 4 84782963 84783074 112 - 1.439 1.250 -0.659
ENSG00000163625 E054 24.0579970 0.0016599867 7.342603e-04 7.735377e-03 4 84785979 84786139 161 - 1.459 1.259 -0.693
ENSG00000163625 E055 29.0051158 0.0036678137 4.637662e-02 1.709821e-01 4 84787482 84787713 232 - 1.499 1.413 -0.297
ENSG00000163625 E056 20.6008400 0.0345053802 1.283924e-01 3.293005e-01 4 84789726 84789907 182 - 1.365 1.239 -0.441
ENSG00000163625 E057 28.0092035 0.0203889480 1.814882e-03 1.580071e-02 4 84794519 84794737 219 - 1.529 1.287 -0.837
ENSG00000163625 E058 19.0861189 0.0019526916 1.244285e-02 6.822114e-02 4 84794879 84794979 101 - 1.350 1.196 -0.538
ENSG00000163625 E059 19.5355482 0.0087119985 4.741791e-02 1.735560e-01 4 84796521 84796752 232 - 1.353 1.219 -0.470
ENSG00000163625 E060 15.4649796 0.0040477396 7.561114e-02 2.360385e-01 4 84797996 84798108 113 - 1.250 1.136 -0.405
ENSG00000163625 E061 13.9862768 0.0176427937 4.910637e-03 3.415357e-02 4 84801650 84801781 132 - 1.257 0.980 -0.996
ENSG00000163625 E062 6.7430902 0.0449414090 2.126249e-04 2.814607e-03 4 84801782 84801789 8 - 1.029 0.421 -2.567
ENSG00000163625 E063 12.0530487 0.0506928227 2.888218e-02 1.240260e-01 4 84801790 84801864 75 - 1.203 0.916 -1.047
ENSG00000163625 E064 15.7894335 0.2486310609 6.832568e-01 8.247345e-01 4 84803290 84803467 178 - 1.277 1.103 -0.620
ENSG00000163625 E065 0.0000000       4 84803883 84804174 292 -      
ENSG00000163625 E066 1.4215244 0.0135507425 2.325906e-01 4.681613e-01 4 84808334 84808417 84 - 0.444 0.260 -1.122
ENSG00000163625 E067 2.9671397 0.0175826078 3.912188e-01 6.213742e-01 4 84808866 84809886 1021 - 0.634 0.537 -0.435
ENSG00000163625 E068 26.8111556 0.2799319498 8.577418e-01 9.292066e-01 4 84809887 84810344 458 - 1.451 1.408 -0.148
ENSG00000163625 E069 19.1006346 0.0021476781 4.573218e-02 1.693423e-01 4 84817392 84817585 194 - 1.339 1.229 -0.388
ENSG00000163625 E070 17.0358778 0.0033685451 7.437361e-03 4.673926e-02 4 84820085 84820186 102 - 1.309 1.123 -0.658
ENSG00000163625 E071 40.8560989 0.0093955683 7.819404e-05 1.217042e-03 4 84821084 84821551 468 - 1.688 1.452 -0.807
ENSG00000163625 E072 20.7823399 0.0028361890 9.502061e-03 5.597185e-02 4 84826815 84826981 167 - 1.379 1.219 -0.560
ENSG00000163625 E073 21.7808185 0.0028351249 8.756653e-03 5.274460e-02 4 84829004 84829190 187 - 1.397 1.240 -0.548
ENSG00000163625 E074 18.0154737 0.0022151145 8.955144e-02 2.629804e-01 4 84831413 84831605 193 - 1.297 1.208 -0.315
ENSG00000163625 E075 13.4041609 0.0026494041 5.659885e-02 1.950721e-01 4 84836929 84837090 162 - 1.197 1.066 -0.472
ENSG00000163625 E076 7.5089012 0.0055046191 1.271607e-02 6.930745e-02 4 84841154 84841191 38 - 1.007 0.740 -1.024
ENSG00000163625 E077 14.5195957 0.0027186821 1.578500e-05 3.117766e-04 4 84841192 84841263 72 - 1.297 0.922 -1.356
ENSG00000163625 E078 0.3206185 0.0274424043 3.196718e-01   4 84844456 84844509 54 - 0.179 0.000 -9.771
ENSG00000163625 E079 0.1308682 0.0326491905 3.486374e-01   4 84849673 84849901 229 - 0.000 0.149 10.101
ENSG00000163625 E080 16.9122501 0.0074306011 6.701860e-04 7.184710e-03 4 84849902 84850025 124 - 1.339 1.064 -0.977
ENSG00000163625 E081 14.5914884 0.1759510814 4.055825e-01 6.327255e-01 4 84860412 84860563 152 - 1.226 1.123 -0.366
ENSG00000163625 E082 7.2646875 0.0170195935 7.622469e-01 8.739719e-01 4 84860564 84860622 59 - 0.911 0.920 0.036
ENSG00000163625 E083 1.5708430 0.0983400692 1.671430e-01 3.867613e-01 4 84879406 84879494 89 - 0.248 0.542 1.693
ENSG00000163625 E084 5.3168669 0.0115229511 2.627352e-02 1.161298e-01 4 84896911 84897010 100 - 0.868 0.588 -1.152
ENSG00000163625 E085 4.0735824 0.0462981489 5.805303e-01 7.575196e-01 4 84932270 84932363 94 - 0.725 0.669 -0.233
ENSG00000163625 E086 7.3091174 0.1035768267 3.336163e-01 5.721990e-01 4 84966209 84967111 903 - 0.976 0.819 -0.599