ENSG00000163608

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314400 ENSG00000163608 HEK293_OSMI2_6hA HEK293_TMG_6hB NEPRO protein_coding protein_coding 24.30152 9.141934 41.75313 1.714355 1.542614 2.190081 4.2262191 1.6858131 7.057310 0.1230823 1.6091452 2.05918400 0.19506250 0.19490000 0.17240000 -0.02250000 0.92538445 0.0140208 FALSE TRUE
ENST00000469809 ENSG00000163608 HEK293_OSMI2_6hA HEK293_TMG_6hB NEPRO protein_coding nonsense_mediated_decay 24.30152 9.141934 41.75313 1.714355 1.542614 2.190081 0.7468409 0.0000000 1.047349 0.0000000 1.0473488 6.72430756 0.05282083 0.00000000 0.02386667 0.02386667 1.00000000 0.0140208 FALSE TRUE
ENST00000472637 ENSG00000163608 HEK293_OSMI2_6hA HEK293_TMG_6hB NEPRO protein_coding nonsense_mediated_decay 24.30152 9.141934 41.75313 1.714355 1.542614 2.190081 2.4833737 2.2916011 2.162536 0.5547424 0.8195135 -0.08325787 0.15099583 0.24446667 0.05046667 -0.19400000 0.01402080 0.0140208 FALSE TRUE
ENST00000473284 ENSG00000163608 HEK293_OSMI2_6hA HEK293_TMG_6hB NEPRO protein_coding nonsense_mediated_decay 24.30152 9.141934 41.75313 1.714355 1.542614 2.190081 5.6440053 1.6465043 11.269445 0.3588518 0.5483669 2.76748221 0.17353333 0.17803333 0.26973333 0.09170000 0.05164217 0.0140208 FALSE TRUE
ENST00000474311 ENSG00000163608 HEK293_OSMI2_6hA HEK293_TMG_6hB NEPRO protein_coding retained_intron 24.30152 9.141934 41.75313 1.714355 1.542614 2.190081 2.7001056 1.4790552 5.232491 0.3697292 0.3901481 1.81585519 0.12642917 0.16520000 0.12530000 -0.03990000 0.74673958 0.0140208 FALSE TRUE
MSTRG.23436.3 ENSG00000163608 HEK293_OSMI2_6hA HEK293_TMG_6hB NEPRO protein_coding   24.30152 9.141934 41.75313 1.714355 1.542614 2.190081 2.7382094 0.7979289 4.344334 0.4010259 0.7162220 2.43015192 0.09613333 0.07376667 0.10303333 0.02926667 0.84761983 0.0140208 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000163608 E001 223.740181 0.0578675460 8.137157e-01 0.9044945445 3 113002444 113004565 2122 - 2.287 2.267 -0.066
ENSG00000163608 E002 56.641887 0.0118840943 1.013081e-02 0.0586981990 3 113004566 113004916 351 - 1.732 1.515 -0.739
ENSG00000163608 E003 18.924687 0.0017497004 3.133590e-01 0.5535848556 3 113004917 113004953 37 - 1.254 1.159 -0.335
ENSG00000163608 E004 36.983755 0.0009698194 6.978547e-01 0.8341438972 3 113004954 113004963 10 - 1.508 1.535 0.092
ENSG00000163608 E005 134.538312 0.0004170283 1.069529e-04 0.0015823686 3 113004964 113005175 212 - 2.032 2.165 0.444
ENSG00000163608 E006 83.262405 0.0005762637 7.094780e-03 0.0450497950 3 113005176 113005242 67 - 1.829 1.947 0.397
ENSG00000163608 E007 62.690744 0.0006918638 1.335177e-04 0.0019039692 3 113005243 113005263 21 - 1.688 1.875 0.633
ENSG00000163608 E008 121.690769 0.0003809446 6.941596e-06 0.0001527988 3 113005264 113005321 58 - 1.981 2.140 0.534
ENSG00000163608 E009 178.057383 0.0003079529 1.797514e-03 0.0156832691 3 113005322 113005480 159 - 2.163 2.257 0.314
ENSG00000163608 E010 426.103411 0.0006266649 1.116260e-01 0.3017520218 3 113005481 113005943 463 - 2.572 2.538 -0.112
ENSG00000163608 E011 120.713269 0.0004310088 9.068745e-01 0.9555218597 3 113005944 113006004 61 - 2.021 2.018 -0.009
ENSG00000163608 E012 234.558065 0.0003384487 6.356937e-01 0.7940635379 3 113008171 113008430 260 - 2.309 2.298 -0.037
ENSG00000163608 E013 14.158821 0.0025039556 2.183766e-01 0.4514692272 3 113008431 113008800 370 - 1.147 1.014 -0.480
ENSG00000163608 E014 5.089452 0.0051171235 2.813733e-01 0.5216643026 3 113009498 113009584 87 - 0.764 0.593 -0.722
ENSG00000163608 E015 4.923353 0.0095618304 6.580582e-02 0.2157235430 3 113010504 113010642 139 - 0.765 0.440 -1.458
ENSG00000163608 E016 85.701952 0.0007852202 9.996059e-01 1.0000000000 3 113010643 113010657 15 - 1.873 1.875 0.007
ENSG00000163608 E017 99.335247 0.0004814046 8.637931e-01 0.9325087496 3 113010658 113010704 47 - 1.935 1.944 0.029
ENSG00000163608 E018 75.663615 0.0006063840 9.295230e-01 0.9667770428 3 113011045 113011055 11 - 1.821 1.818 -0.010
ENSG00000163608 E019 94.215590 0.0058495171 8.669875e-01 0.9343452950 3 113011056 113011092 37 - 1.910 1.917 0.026
ENSG00000163608 E020 107.142008 0.0004476618 5.764074e-01 0.7547145117 3 113011093 113011165 73 - 1.960 1.983 0.077
ENSG00000163608 E021 94.736396 0.0022944027 8.952718e-01 0.9493696395 3 113011166 113011261 96 - 1.912 1.905 -0.022
ENSG00000163608 E022 95.410961 0.0024223410 9.466949e-02 0.2723735081 3 113011262 113011379 118 - 1.931 1.848 -0.279
ENSG00000163608 E023 64.202494 0.0010069663 3.300131e-03 0.0251961558 3 113011380 113011406 27 - 1.780 1.616 -0.555
ENSG00000163608 E024 10.350729 0.0146362367 8.874936e-03 0.0532602504 3 113011407 113011536 130 - 1.049 0.655 -1.538
ENSG00000163608 E025 8.757637 0.0037568612 2.318416e-02 0.1065356639 3 113012539 113012576 38 - 0.981 0.654 -1.289
ENSG00000163608 E026 12.414346 0.0029667364 5.086704e-02 0.1817383819 3 113012577 113012733 157 - 1.106 0.871 -0.874
ENSG00000163608 E027 79.569089 0.0005888632 3.621388e-02 0.1448137368 3 113012734 113012792 59 - 1.857 1.756 -0.340
ENSG00000163608 E028 60.142360 0.0021463621 3.659233e-02 0.1458292054 3 113012793 113012811 19 - 1.745 1.622 -0.417
ENSG00000163608 E029 11.711192 0.0122451397 4.599257e-01 0.6730893521 3 113012812 113013271 460 - 1.056 0.963 -0.343
ENSG00000163608 E030 45.457576 0.0009438346 4.394729e-02 0.1649594554 3 113013272 113013274 3 - 1.625 1.496 -0.439
ENSG00000163608 E031 73.960306 0.0006139739 3.908761e-02 0.1524184354 3 113013275 113013330 56 - 1.827 1.724 -0.348
ENSG00000163608 E032 70.624845 0.0005957765 3.439303e-01 0.5815545810 3 113013331 113013361 31 - 1.798 1.752 -0.157
ENSG00000163608 E033 70.167980 0.0005650839 8.381434e-01 0.9183798682 3 113013362 113013403 42 - 1.787 1.778 -0.031
ENSG00000163608 E034 3.908720 0.2747598149 6.281888e-01 0.7893629348 3 113013949 113013952 4 - 0.613 0.714 0.431
ENSG00000163608 E035 85.930026 0.0107000712 7.856639e-01 0.8879215096 3 113013953 113014032 80 - 1.878 1.850 -0.095
ENSG00000163608 E036 65.538012 0.0212246992 8.996671e-01 0.9517185791 3 113017448 113017602 155 - 1.757 1.760 0.008
ENSG00000163608 E037 1.630056 0.0116932314 2.825366e-01 0.5229331259 3 113019066 113019160 95 - 0.416 0.200 -1.454
ENSG00000163608 E038 55.737029 0.9942232535 4.362720e-01 0.6560015343 3 113019542 113019861 320 - 1.639 1.808 0.573