ENSG00000162402

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000294383 ENSG00000162402 HEK293_OSMI2_6hA HEK293_TMG_6hB USP24 protein_coding protein_coding 17.19942 11.59953 28.08361 1.775444 0.7567693 1.274933 7.1272737 6.6938429 6.511207 1.86598781 2.8205384 -0.03984935 0.48745417 0.551233333 0.22693333 -0.32430000 3.900859e-01 2.66142e-07 FALSE TRUE
ENST00000472566 ENSG00000162402 HEK293_OSMI2_6hA HEK293_TMG_6hB USP24 protein_coding retained_intron 17.19942 11.59953 28.08361 1.775444 0.7567693 1.274933 0.8386809 0.6991197 1.578099 0.18678572 0.1104811 1.16320024 0.05213333 0.068733333 0.05646667 -0.01226667 9.936430e-01 2.66142e-07 FALSE FALSE
ENST00000480962 ENSG00000162402 HEK293_OSMI2_6hA HEK293_TMG_6hB USP24 protein_coding processed_transcript 17.19942 11.59953 28.08361 1.775444 0.7567693 1.274933 0.8478539 0.2669918 1.651271 0.26699178 0.2442144 2.58437217 0.05132917 0.032166667 0.05910000 0.02693333 4.417329e-01 2.66142e-07 FALSE FALSE
ENST00000484447 ENSG00000162402 HEK293_OSMI2_6hA HEK293_TMG_6hB USP24 protein_coding protein_coding 17.19942 11.59953 28.08361 1.775444 0.7567693 1.274933 1.9571435 3.4889020 2.092925 0.46347817 0.1154515 -0.73450473 0.14629167 0.307966667 0.07486667 -0.23310000 2.661420e-07 2.66142e-07 FALSE TRUE
MSTRG.1258.3 ENSG00000162402 HEK293_OSMI2_6hA HEK293_TMG_6hB USP24 protein_coding   17.19942 11.59953 28.08361 1.775444 0.7567693 1.274933 1.1863050 0.3450938 2.089546 0.03815932 0.1477082 2.56380503 0.05330000 0.031200000 0.07476667 0.04356667 5.925701e-02 2.66142e-07 TRUE TRUE
MSTRG.1258.4 ENSG00000162402 HEK293_OSMI2_6hA HEK293_TMG_6hB USP24 protein_coding   17.19942 11.59953 28.08361 1.775444 0.7567693 1.274933 4.9142099 0.1021109 13.442570 0.10211094 1.6387606 6.90681098 0.19416250 0.008433333 0.48226667 0.47383333 2.804741e-04 2.66142e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000162402 E001 454.6966763 1.6841579949 2.661071e-01 5.055838e-01 1 55066359 55067587 1229 - 2.350 2.946 1.986
ENSG00000162402 E002 338.6420693 1.6049186535 2.809540e-01 5.212126e-01 1 55067588 55068495 908 - 2.244 2.804 1.866
ENSG00000162402 E003 142.6675168 1.3629356767 3.227674e-01 5.621288e-01 1 55068496 55068744 249 - 1.934 2.381 1.497
ENSG00000162402 E004 278.2261909 1.5898364319 3.601364e-01 5.958172e-01 1 55068745 55069107 363 - 2.225 2.666 1.469
ENSG00000162402 E005 5.6570292 0.2603998057 2.535122e-01 4.918101e-01 1 55071273 55071490 218 - 0.640 1.013 1.469
ENSG00000162402 E006 3.8099271 0.0062076574 8.894552e-01 9.464283e-01 1 55071813 55071813 1 - 0.623 0.713 0.378
ENSG00000162402 E007 204.3151229 0.0124687094 2.547278e-04 3.271470e-03 1 55071814 55071924 111 - 2.160 2.459 0.998
ENSG00000162402 E008 185.1791406 0.0003195044 1.105290e-04 1.625140e-03 1 55072317 55072403 87 - 2.163 2.356 0.646
ENSG00000162402 E009 151.1980207 0.0004937898 1.264611e-04 1.816799e-03 1 55072786 55072861 76 - 2.071 2.277 0.688
ENSG00000162402 E010 2.2936190 0.7814028873 8.708577e-01 9.364262e-01 1 55072862 55072992 131 - 0.447 0.569 0.588
ENSG00000162402 E011 126.8149590 0.0012745764 2.508398e-03 2.038101e-02 1 55073828 55073906 79 - 1.999 2.197 0.662
ENSG00000162402 E012 123.6819968 0.0004548042 1.673556e-01 3.870467e-01 1 55075457 55075523 67 - 2.009 2.144 0.451
ENSG00000162402 E013 119.7839201 0.0025879040 5.419467e-01 7.304540e-01 1 55077235 55077300 66 - 2.017 2.083 0.219
ENSG00000162402 E014 137.8325820 0.0052905997 3.025287e-01 5.431073e-01 1 55078538 55078651 114 - 2.051 2.191 0.471
ENSG00000162402 E015 147.2424300 0.0004174099 3.829981e-03 2.819282e-02 1 55079538 55079659 122 - 2.069 2.247 0.597
ENSG00000162402 E016 133.5894190 0.0003851549 7.721669e-02 2.392259e-01 1 55081322 55081386 65 - 2.039 2.184 0.486
ENSG00000162402 E017 123.8363914 0.0009656658 3.563547e-03 2.672432e-02 1 55081387 55081424 38 - 1.987 2.180 0.647
ENSG00000162402 E018 147.0583893 0.0002982215 1.133628e-02 6.374286e-02 1 55083272 55083364 93 - 2.073 2.238 0.555
ENSG00000162402 E019 104.5446155 0.0034620599 3.471335e-01 5.846568e-01 1 55083772 55083842 71 - 1.936 2.070 0.447
ENSG00000162402 E020 73.2626084 0.0058819807 1.481501e-01 3.596857e-01 1 55083843 55083888 46 - 1.772 1.943 0.576
ENSG00000162402 E021 0.1614157 0.0344698418 1.000000e+00   1 55084393 55084421 29 - 0.079 0.000 -7.788
ENSG00000162402 E022 115.8675350 0.0021711511 4.428465e-02 1.658156e-01 1 55085942 55086038 97 - 1.967 2.137 0.570
ENSG00000162402 E023 13.6591759 0.1963724377 9.983032e-01 1.000000e+00 1 55086039 55086434 396 - 1.094 1.187 0.334
ENSG00000162402 E024 104.0622910 0.0028775978 7.219037e-01 8.492202e-01 1 55089627 55089740 114 - 1.943 2.049 0.355
ENSG00000162402 E025 111.6787977 0.0030583001 8.965791e-01 9.501329e-01 1 55092023 55092126 104 - 1.976 2.071 0.318
ENSG00000162402 E026 109.4010892 0.0137512146 7.006215e-01 8.360208e-01 1 55092821 55092916 96 - 1.975 2.039 0.215
ENSG00000162402 E027 2.1802697 0.0103376729 2.307040e-03 1.909672e-02 1 55093553 55093936 384 - 0.580 0.000 -11.593
ENSG00000162402 E028 152.1412177 0.0042875902 5.747181e-01 7.534780e-01 1 55093937 55094087 151 - 2.120 2.180 0.202
ENSG00000162402 E029 147.9889011 0.0002869280 5.661861e-02 1.951283e-01 1 55095255 55095396 142 - 2.123 2.149 0.088
ENSG00000162402 E030 132.0413899 0.0130420899 1.841127e-01 4.093020e-01 1 55096498 55096622 125 - 2.081 2.079 -0.007
ENSG00000162402 E031 153.2991631 0.0145189233 3.816922e-01 6.136873e-01 1 55096952 55097172 221 - 2.138 2.155 0.056
ENSG00000162402 E032 108.4760738 0.0039150589 1.164638e-01 3.098886e-01 1 55097598 55097717 120 - 1.991 1.999 0.028
ENSG00000162402 E033 144.9940116 0.0072374548 8.448993e-02 2.537193e-01 1 55097943 55098084 142 - 2.120 2.116 -0.014
ENSG00000162402 E034 115.5999570 0.0069539756 2.903245e-01 5.309582e-01 1 55098476 55098558 83 - 2.011 2.043 0.109
ENSG00000162402 E035 110.5379951 0.0068881971 6.423802e-01 7.984464e-01 1 55099771 55099869 99 - 1.982 2.043 0.204
ENSG00000162402 E036 111.4993109 0.0021460031 1.980927e-01 4.272360e-01 1 55100839 55100964 126 - 1.994 2.028 0.113
ENSG00000162402 E037 101.8685130 0.0004451358 3.335080e-01 5.720538e-01 1 55101584 55101703 120 - 1.953 2.004 0.169
ENSG00000162402 E038 97.0698060 0.0007729510 5.560133e-01 7.405095e-01 1 55103876 55104020 145 - 1.932 1.996 0.215
ENSG00000162402 E039 6.2266258 0.2530758675 4.732174e-01 6.823046e-01 1 55105400 55105521 122 - 0.858 0.704 -0.616
ENSG00000162402 E040 80.3127200 0.0061582592 6.758186e-02 2.196473e-01 1 55106146 55106263 118 - 1.870 1.856 -0.049
ENSG00000162402 E041 140.2504205 0.0003402053 7.416834e-10 4.424127e-08 1 55107239 55107430 192 - 2.138 2.013 -0.420
ENSG00000162402 E042 87.4243209 0.0005670619 1.682227e-05 3.295810e-04 1 55110185 55110246 62 - 1.927 1.827 -0.340
ENSG00000162402 E043 132.6860382 0.0080918401 7.915712e-03 4.893415e-02 1 55120596 55120756 161 - 2.099 2.027 -0.242
ENSG00000162402 E044 73.1760682 0.0020335201 3.233994e-03 2.480384e-02 1 55121436 55121506 71 - 1.840 1.777 -0.213
ENSG00000162402 E045 105.0571511 0.0041336391 1.195150e-02 6.624800e-02 1 55123447 55123602 156 - 1.990 1.955 -0.115
ENSG00000162402 E046 82.1659022 0.0100508927 1.192906e-01 3.147035e-01 1 55124469 55124628 160 - 1.879 1.872 -0.025
ENSG00000162402 E047 122.4855248 0.0111978774 3.134597e-03 2.421375e-02 1 55125320 55125548 229 - 2.074 1.978 -0.324
ENSG00000162402 E048 93.2178807 0.0012092280 1.131125e-04 1.655814e-03 1 55125663 55125758 96 - 1.951 1.871 -0.271
ENSG00000162402 E049 99.1442944 0.0004409195 6.185734e-04 6.740776e-03 1 55129477 55129574 98 - 1.971 1.923 -0.164
ENSG00000162402 E050 118.1810975 0.0003457628 1.725605e-07 6.050949e-06 1 55132545 55132700 156 - 2.061 1.954 -0.358
ENSG00000162402 E051 79.4347319 0.0051976015 3.792587e-03 2.797743e-02 1 55134070 55134163 94 - 1.878 1.804 -0.252
ENSG00000162402 E052 58.5021795 0.0017323839 5.477485e-05 9.007484e-04 1 55134328 55134413 86 - 1.764 1.624 -0.472
ENSG00000162402 E053 83.0272709 0.0107149106 4.044490e-02 1.558897e-01 1 55137515 55137688 174 - 1.898 1.838 -0.203
ENSG00000162402 E054 70.7903665 0.0055711878 7.532307e-04 7.886307e-03 1 55137806 55137904 99 - 1.846 1.730 -0.394
ENSG00000162402 E055 77.7422847 0.0004781481 5.568996e-09 2.765843e-07 1 55138608 55138718 111 - 1.899 1.711 -0.632
ENSG00000162402 E056 57.9311087 0.0010768167 6.078402e-05 9.839409e-04 1 55138944 55139010 67 - 1.761 1.629 -0.445
ENSG00000162402 E057 76.7049967 0.0068291442 1.264825e-03 1.189595e-02 1 55141616 55141731 116 - 1.875 1.766 -0.369
ENSG00000162402 E058 44.4560962 0.0032010012 9.615936e-04 9.601406e-03 1 55142742 55142795 54 - 1.648 1.521 -0.433
ENSG00000162402 E059 70.4399662 0.0158004247 1.423395e-04 2.008518e-03 1 55142979 55143119 141 - 1.861 1.661 -0.676
ENSG00000162402 E060 50.6455873 0.0125592425 3.482707e-04 4.221904e-03 1 55144127 55144203 77 - 1.722 1.522 -0.682
ENSG00000162402 E061 75.2486253 0.0012991681 1.846488e-14 2.608786e-12 1 55145998 55146109 112 - 1.911 1.596 -1.067
ENSG00000162402 E062 80.7995670 0.0032308253 1.529464e-09 8.614866e-08 1 55146929 55147060 132 - 1.929 1.687 -0.818
ENSG00000162402 E063 83.8464144 0.0019922084 2.114083e-07 7.245609e-06 1 55147649 55147798 150 - 1.928 1.760 -0.565
ENSG00000162402 E064 70.3093760 0.0136602162 1.518931e-02 7.880650e-02 1 55148463 55148570 108 - 1.833 1.729 -0.350
ENSG00000162402 E065 3.7376833 0.0418834687 6.673440e-01 8.145296e-01 1 55151912 55151975 64 - 0.625 0.618 -0.029
ENSG00000162402 E066 57.4174300 0.0214170669 2.194461e-02 1.023900e-01 1 55153870 55153917 48 - 1.751 1.623 -0.435
ENSG00000162402 E067 97.1019027 0.0037838366 2.833536e-06 7.071265e-05 1 55154119 55154280 162 - 1.983 1.830 -0.515
ENSG00000162402 E068 84.1208887 0.0079117162 3.171790e-05 5.663879e-04 1 55154371 55154466 96 - 1.927 1.755 -0.579
ENSG00000162402 E069 81.0648973 0.0040865360 3.593827e-06 8.664105e-05 1 55154671 55154778 108 - 1.911 1.748 -0.550
ENSG00000162402 E070 84.3398886 0.0136885446 5.710757e-06 1.294817e-04 1 55156948 55157051 104 - 1.944 1.708 -0.796
ENSG00000162402 E071 79.5329831 0.0118417518 4.069365e-07 1.292689e-05 1 55157256 55157370 115 - 1.928 1.649 -0.944
ENSG00000162402 E072 78.0496180 0.0006010900 5.305834e-12 4.808178e-10 1 55158878 55159036 159 - 1.915 1.670 -0.828
ENSG00000162402 E073 60.9469036 0.0007733644 2.110166e-10 1.396550e-08 1 55159611 55159685 75 - 1.810 1.548 -0.890
ENSG00000162402 E074 52.9700770 0.0060541420 1.102615e-04 1.621785e-03 1 55162199 55162264 66 - 1.733 1.558 -0.594
ENSG00000162402 E075 52.1515378 0.0081201152 7.979913e-04 8.267786e-03 1 55165885 55165950 66 - 1.721 1.570 -0.513
ENSG00000162402 E076 45.3436519 0.0025313549 9.890448e-08 3.672918e-06 1 55166568 55166603 36 - 1.683 1.414 -0.922
ENSG00000162402 E077 71.1739139 0.0061844049 3.248110e-07 1.058537e-05 1 55171556 55171678 123 - 1.871 1.637 -0.792
ENSG00000162402 E078 89.0544739 0.0056021978 2.701050e-12 2.582773e-10 1 55172377 55172520 144 - 1.983 1.648 -1.131
ENSG00000162402 E079 51.6985273 0.0244260450 2.713013e-05 4.944006e-04 1 55176376 55176443 68 - 1.752 1.403 -1.193
ENSG00000162402 E080 56.5510825 0.0040497231 4.425991e-12 4.076112e-10 1 55177967 55178129 163 - 1.794 1.414 -1.299
ENSG00000162402 E081 7.7389241 0.0045893016 4.362268e-02 1.641891e-01 1 55178130 55178132 3 - 0.945 0.754 -0.738
ENSG00000162402 E082 0.9936204 0.0159410258 9.506844e-01   1 55214606 55214789 184 - 0.255 0.310 0.378
ENSG00000162402 E083 37.8657089 0.0708859663 4.641252e-02 1.710485e-01 1 55214790 55217530 2741 - 1.598 1.369 -0.785