ENSG00000158290

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000336592 ENSG00000158290 HEK293_OSMI2_6hA HEK293_TMG_6hB CUL4B protein_coding protein_coding 26.84554 11.25582 42.91594 2.866329 1.210113 1.929897 11.604892 5.0866159 18.205358 1.2632628 0.4981633 1.8375438 0.38416250 0.4548667 0.42540000 -0.02946667 8.744170e-01 1.709672e-17 FALSE TRUE
ENST00000371323 ENSG00000158290 HEK293_OSMI2_6hA HEK293_TMG_6hB CUL4B protein_coding protein_coding 26.84554 11.25582 42.91594 2.866329 1.210113 1.929897 2.535031 1.2597414 2.172226 0.4861382 0.3925331 0.7812657 0.14103750 0.1048000 0.05063333 -0.05416667 3.021087e-01 1.709672e-17 FALSE TRUE
ENST00000674137 ENSG00000158290 HEK293_OSMI2_6hA HEK293_TMG_6hB CUL4B protein_coding protein_coding 26.84554 11.25582 42.91594 2.866329 1.210113 1.929897 3.296129 0.9370654 6.834691 0.5422954 0.2955288 2.8534493 0.10522917 0.0662000 0.15913333 0.09293333 6.016240e-01 1.709672e-17 FALSE TRUE
ENST00000680457 ENSG00000158290 HEK293_OSMI2_6hA HEK293_TMG_6hB CUL4B protein_coding processed_transcript 26.84554 11.25582 42.91594 2.866329 1.210113 1.929897 1.431428 0.0000000 5.717012 0.0000000 1.2523054 9.1616388 0.03325833 0.0000000 0.13193333 0.13193333 1.909087e-10 1.709672e-17 FALSE TRUE
ENST00000681706 ENSG00000158290 HEK293_OSMI2_6hA HEK293_TMG_6hB CUL4B protein_coding processed_transcript 26.84554 11.25582 42.91594 2.866329 1.210113 1.929897 1.445149 2.1430111 0.000000 0.8292061 0.0000000 -7.7502120 0.12135000 0.1752333 0.00000000 -0.17523333 1.709672e-17 1.709672e-17 FALSE TRUE
ENST00000681869 ENSG00000158290 HEK293_OSMI2_6hA HEK293_TMG_6hB CUL4B protein_coding non_stop_decay 26.84554 11.25582 42.91594 2.866329 1.210113 1.929897 2.940841 0.0000000 4.161591 0.0000000 1.0238882 8.7044539 0.06882917 0.0000000 0.09573333 0.09573333 5.667041e-08 1.709672e-17 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000158290 E001 9.6632397 0.0243465026 3.254082e-09 1.700886e-07 X 120505920 120523857 17938 - 0.660 1.385 2.703
ENSG00000158290 E002 2.3765010 0.0366845904 1.257711e-02 6.875085e-02 X 120523858 120524611 754 - 0.316 0.755 2.131
ENSG00000158290 E003 1.2318939 0.3525791799 1.748051e-01   X 120524612 120524613 2 - 0.184 0.624 2.602
ENSG00000158290 E004 1.6963644 0.2131653589 2.161546e-02 1.013446e-01 X 120524614 120524619 6 - 0.185 0.772 3.213
ENSG00000158290 E005 13.2777754 0.1163794548 2.978205e-01 5.382803e-01 X 120524620 120524650 31 - 1.010 1.297 1.027
ENSG00000158290 E006 31.2653359 0.0013219967 4.207229e-06 9.919259e-05 X 120524651 120524672 22 - 1.348 1.660 1.071
ENSG00000158290 E007 102.5372025 0.0053287619 6.991595e-06 1.537375e-04 X 120524673 120524794 122 - 1.875 2.114 0.803
ENSG00000158290 E008 85.8740748 0.0062748317 3.965764e-05 6.826942e-04 X 120524795 120524822 28 - 1.800 2.034 0.788
ENSG00000158290 E009 73.4432277 0.0028762541 5.283986e-06 1.208379e-04 X 120524823 120524823 1 - 1.733 1.968 0.794
ENSG00000158290 E010 107.4155407 0.0005836118 5.100470e-09 2.561896e-07 X 120524824 120524853 30 - 1.900 2.128 0.764
ENSG00000158290 E011 177.8612960 0.0005742332 1.052362e-13 1.304491e-11 X 120524854 120524986 133 - 2.117 2.347 0.771
ENSG00000158290 E012 680.5574939 0.0006697304 6.523266e-11 4.795674e-09 X 120524987 120526080 1094 - 2.732 2.857 0.417
ENSG00000158290 E013 181.2201543 0.0010318981 3.035615e-01 5.441275e-01 X 120526081 120526319 239 - 2.199 2.169 -0.101
ENSG00000158290 E014 102.8970114 0.0004160215 8.388483e-01 9.187732e-01 X 120526320 120526409 90 - 1.950 1.948 -0.004
ENSG00000158290 E015 93.2898372 0.0005070006 8.587590e-01 9.296978e-01 X 120526410 120526441 32 - 1.904 1.919 0.051
ENSG00000158290 E016 157.2177884 0.0002623037 7.191861e-01 8.476724e-01 X 120526442 120526572 131 - 2.128 2.148 0.065
ENSG00000158290 E017 158.5843863 0.0002950836 5.685906e-01 7.492343e-01 X 120526573 120526659 87 - 2.130 2.156 0.088
ENSG00000158290 E018 261.6628843 0.0002133304 7.079205e-01 8.405015e-01 X 120526660 120526856 197 - 2.347 2.364 0.057
ENSG00000158290 E019 0.5067846 0.0217681645 6.940159e-01   X 120528760 120528821 62 - 0.133 0.199 0.703
ENSG00000158290 E020 1.3553852 0.1245655046 1.091238e-01   X 120529976 120530101 126 - 0.390 0.000 -14.652
ENSG00000158290 E021 246.0952567 0.0002344034 2.278815e-01 4.628426e-01 X 120530102 120530254 153 - 2.318 2.357 0.131
ENSG00000158290 E022 2.2774994 0.0098540271 6.911653e-01 8.297980e-01 X 120530255 120531297 1043 - 0.446 0.522 0.376
ENSG00000158290 E023 0.4654660 0.0286057321 5.032577e-01   X 120531940 120532335 396 - 0.187 0.000 -13.926
ENSG00000158290 E024 0.6081007 0.0226798388 3.300842e-01   X 120532336 120532421 86 - 0.234 0.000 -14.427
ENSG00000158290 E025 272.3150799 0.0001763946 6.432975e-01 7.990305e-01 X 120532422 120532594 173 - 2.365 2.384 0.064
ENSG00000158290 E026 204.6258412 0.0003141512 4.405272e-01 6.591364e-01 X 120534481 120534586 106 - 2.241 2.271 0.103
ENSG00000158290 E027 0.3032425 0.0274424043 3.038389e-02   X 120534587 120535688 1102 - 0.000 0.335 14.548
ENSG00000158290 E028 213.1705437 0.0006457034 2.783191e-01 5.184338e-01 X 120535830 120535943 114 - 2.271 2.247 -0.080
ENSG00000158290 E029 0.0000000       X 120536134 120536210 77 -      
ENSG00000158290 E030 189.9436360 0.0006461057 2.645680e-01 5.038151e-01 X 120536927 120537034 108 - 2.223 2.196 -0.090
ENSG00000158290 E031 0.1426347 0.0332103963 1.000000e+00   X 120537300 120537475 176 - 0.071 0.000 -12.289
ENSG00000158290 E032 3.6795069 0.0068116494 1.993573e-01 4.289246e-01 X 120538118 120538123 6 - 0.661 0.438 -1.038
ENSG00000158290 E033 158.8736491 0.0010459273 3.000566e-01 5.404576e-01 X 120538124 120538209 86 - 2.145 2.115 -0.101
ENSG00000158290 E034 8.8739836 0.3342026053 9.725284e-01 9.882344e-01 X 120538210 120538347 138 - 0.920 0.966 0.171
ENSG00000158290 E035 5.8700903 0.2564169788 8.047733e-01 8.990496e-01 X 120538348 120538409 62 - 0.761 0.807 0.181
ENSG00000158290 E036 12.3040983 0.2470080596 5.687632e-01 7.493850e-01 X 120538410 120538659 250 - 1.011 1.177 0.600
ENSG00000158290 E037 166.3337898 0.0003205129 2.521432e-03 2.047411e-02 X 120538660 120538770 111 - 2.176 2.082 -0.316
ENSG00000158290 E038 1.2269022 0.0214839728 7.755020e-01   X 120538771 120539267 497 - 0.278 0.336 0.381
ENSG00000158290 E039 163.9573530 0.0002920988 7.609676e-04 7.952114e-03 X 120539268 120539372 105 - 2.172 2.065 -0.359
ENSG00000158290 E040 4.1902356 0.0059916395 2.988842e-01 5.393527e-01 X 120539373 120540369 997 - 0.693 0.522 -0.758
ENSG00000158290 E041 164.2527970 0.0026910902 1.192303e-02 6.612474e-02 X 120540370 120540473 104 - 2.173 2.067 -0.352
ENSG00000158290 E042 178.3570801 0.0009854381 6.202279e-04 6.754397e-03 X 120540474 120540562 89 - 2.213 2.098 -0.384
ENSG00000158290 E043 181.9654814 0.0009390719 3.160599e-02 1.320789e-01 X 120541602 120541720 119 - 2.213 2.147 -0.222
ENSG00000158290 E044 131.9666745 0.0003201648 6.401361e-02 2.116913e-01 X 120542966 120543033 68 - 2.072 2.012 -0.203
ENSG00000158290 E045 151.6419023 0.0002903369 2.639056e-01 5.031619e-01 X 120543727 120543809 83 - 2.124 2.094 -0.101
ENSG00000158290 E046 0.3206185 0.0274424043 8.868174e-01   X 120543810 120543964 155 - 0.133 0.000 -13.366
ENSG00000158290 E047 131.2581358 0.0004393191 1.585028e-01 3.745334e-01 X 120544114 120544203 90 - 2.068 2.024 -0.149
ENSG00000158290 E048 113.0631521 0.0015931094 1.858821e-02 9.102380e-02 X 120544481 120544550 70 - 2.014 1.918 -0.324
ENSG00000158290 E049 150.2798012 0.0003892083 4.273474e-06 1.004894e-04 X 120544551 120544643 93 - 2.146 1.986 -0.537
ENSG00000158290 E050 137.2796826 0.0003302403 4.882360e-07 1.516067e-05 X 120545444 120545517 74 - 2.112 1.928 -0.619
ENSG00000158290 E051 127.6486801 0.0004087495 2.289484e-07 7.760621e-06 X 120546547 120546616 70 - 2.084 1.884 -0.671
ENSG00000158290 E052 0.3393995 0.0247413043 8.824704e-01   X 120546617 120546672 56 - 0.133 0.000 -13.409
ENSG00000158290 E053 127.3074897 0.0006671057 8.561847e-03 5.188035e-02 X 120547136 120547239 104 - 2.063 1.967 -0.320
ENSG00000158290 E054 2.9444593 0.3175249810 4.183586e-01 6.423885e-01 X 120547240 120548555 1316 - 0.479 0.704 1.014
ENSG00000158290 E055 1.1067030 0.0140066997 1.106322e-01   X 120554908 120554929 22 - 0.353 0.000 -15.376
ENSG00000158290 E056 1.1067030 0.0140066997 1.106322e-01   X 120554930 120554953 24 - 0.353 0.000 -15.376
ENSG00000158290 E057 0.9523018 0.0160078072 6.907485e-01   X 120554954 120554974 21 - 0.278 0.199 -0.625
ENSG00000158290 E058 0.1614157 0.0354649147 1.000000e+00   X 120555505 120555582 78 - 0.072 0.000 -12.261
ENSG00000158290 E059 0.8787002 1.0896249297 5.573024e-01   X 120557252 120557528 277 - 0.196 0.342 1.074
ENSG00000158290 E060 1.3082695 0.0320143656 4.357346e-01   X 120557529 120557560 32 - 0.354 0.199 -1.116
ENSG00000158290 E061 0.5173834 0.0522231285 5.050627e-01   X 120557561 120557579 19 - 0.187 0.000 -13.659
ENSG00000158290 E062 0.5283420 0.4067117390 6.400111e-01   X 120557580 120557923 344 - 0.136 0.201 0.679
ENSG00000158290 E063 141.9446355 0.0006319706 9.441883e-03 5.570819e-02 X 120557924 120558039 116 - 2.109 2.021 -0.295
ENSG00000158290 E064 0.6600180 0.0193874923 3.272619e-01   X 120558249 120558292 44 - 0.235 0.000 -14.487
ENSG00000158290 E065 5.6384284 0.0485790589 1.059832e-01 2.923408e-01 X 120559779 120560082 304 - 0.820 0.519 -1.280
ENSG00000158290 E066 191.2760591 0.0008237752 6.199614e-04 6.752851e-03 X 120560083 120560420 338 - 2.241 2.134 -0.358
ENSG00000158290 E067 135.7799708 0.0004572907 7.813880e-05 1.216628e-03 X 120560421 120560625 205 - 2.100 1.957 -0.482
ENSG00000158290 E068 71.4792059 0.0187266814 3.038353e-01 5.444229e-01 X 120560626 120561079 454 - 1.812 1.750 -0.210
ENSG00000158290 E069 1.8945685 0.1784018422 8.909801e-01 9.471369e-01 X 120561133 120561371 239 - 0.418 0.434 0.083
ENSG00000158290 E070 21.9660797 0.0019246786 2.575079e-02 1.145311e-01 X 120561372 120561545 174 - 1.338 1.139 -0.701
ENSG00000158290 E071 0.2027342 0.0351208724 1.369980e-01   X 120571176 120571570 395 - 0.000 0.199 13.446
ENSG00000158290 E072 0.7390709 0.1562528890 3.621473e-03   X 120571571 120571836 266 - 0.000 0.528 14.748
ENSG00000158290 E073 0.7390709 0.1562528890 3.621473e-03   X 120571837 120571972 136 - 0.000 0.528 14.748
ENSG00000158290 E074 0.2027342 0.0351208724 1.369980e-01   X 120571973 120572000 28 - 0.000 0.199 13.446
ENSG00000158290 E075 0.4762370 0.0217681645 1.180458e-01   X 120574551 120574630 80 - 0.071 0.335 2.701
ENSG00000158290 E076 0.2735028 0.0274424043 3.913611e-01   X 120575406 120575634 229 - 0.071 0.199 1.699
ENSG00000158290 E077 0.0000000       X 120575635 120575829 195 -      
ENSG00000158290 E078 0.0000000       X 120576753 120576825 73 -      
ENSG00000158290 E079 0.0000000       X 120602244 120602337 94 -      
ENSG00000158290 E080 2.1191338 0.2868820779 7.087212e-02 2.264651e-01 X 120602889 120603012 124 - 0.280 0.725 2.254
ENSG00000158290 E081 0.3088520 0.0255687416 3.921880e-01   X 120603815 120603930 116 - 0.072 0.199 1.696
ENSG00000158290 E082 1.4399749 0.3706651197 8.358772e-02 2.519545e-01 X 120603985 120604099 115 - 0.190 0.609 2.481