ENSG00000155561

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000285968 ENSG00000155561 HEK293_OSMI2_6hA HEK293_TMG_6hB NUP205 protein_coding protein_coding 82.76325 52.08646 104.3234 19.08535 3.980659 1.001944 57.23842 26.64204 94.1644747 7.977336 4.64197964 1.821090 0.6589458 0.5470 0.901866667 0.3548667 2.200042e-08 1.366062e-16 FALSE TRUE
ENST00000461255 ENSG00000155561 HEK293_OSMI2_6hA HEK293_TMG_6hB NUP205 protein_coding retained_intron 82.76325 52.08646 104.3234 19.08535 3.980659 1.001944 14.47355 19.23582 0.2443753 9.554980 0.08760048 -6.241443 0.2007875 0.3183 0.002333333 -0.3159667 1.366062e-16 1.366062e-16 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000155561 E001 1.408540 0.0270003426 3.087272e-02 1.299613e-01 7 135557712 135557715 4 + 0.451 0.001 -10.623
ENSG00000155561 E002 2.543628 0.0623770379 1.544861e-01 3.687318e-01 7 135557716 135557723 8 + 0.586 0.305 -1.491
ENSG00000155561 E003 2.543628 0.0623770379 1.544861e-01 3.687318e-01 7 135557724 135557725 2 + 0.586 0.305 -1.491
ENSG00000155561 E004 3.346280 0.0555150434 5.192091e-02 1.842278e-01 7 135557726 135557741 16 + 0.688 0.305 -1.930
ENSG00000155561 E005 4.709848 0.0218764667 2.234538e-02 1.037273e-01 7 135557742 135557767 26 + 0.799 0.404 -1.788
ENSG00000155561 E006 4.567213 0.0308274581 3.178963e-02 1.325854e-01 7 135557768 135557769 2 + 0.786 0.404 -1.735
ENSG00000155561 E007 4.709848 0.0218764667 2.234538e-02 1.037273e-01 7 135557770 135557772 3 + 0.799 0.404 -1.788
ENSG00000155561 E008 12.207088 0.0035842843 4.077185e-02 1.567225e-01 7 135557773 135557916 144 + 1.133 0.912 -0.813
ENSG00000155561 E009 27.352465 0.0216555314 6.556440e-02 2.151564e-01 7 135557917 135557931 15 + 1.457 1.258 -0.692
ENSG00000155561 E010 197.403261 0.0104003632 6.588214e-05 1.054108e-03 7 135557932 135557972 41 + 2.312 2.067 -0.819
ENSG00000155561 E011 2.606183 0.0488202550 6.214746e-01 7.848466e-01 7 135557973 135558214 242 + 0.508 0.608 0.462
ENSG00000155561 E012 421.250941 0.0052429513 1.057985e-09 6.146771e-08 7 135571105 135571247 143 + 2.642 2.386 -0.854
ENSG00000155561 E013 548.246674 0.0024967498 6.494205e-13 6.897219e-11 7 135573654 135573825 172 + 2.749 2.532 -0.722
ENSG00000155561 E014 460.762855 0.0026241645 7.579270e-12 6.662186e-10 7 135576270 135576414 145 + 2.674 2.460 -0.711
ENSG00000155561 E015 468.991288 0.0020641234 4.980215e-12 4.534880e-10 7 135576969 135577128 160 + 2.678 2.480 -0.661
ENSG00000155561 E016 490.511054 0.0017867108 8.822001e-12 7.671166e-10 7 135577796 135578024 229 + 2.695 2.510 -0.616
ENSG00000155561 E017 378.262290 0.0041366849 1.287341e-06 3.536970e-05 7 135578751 135578915 165 + 2.582 2.400 -0.605
ENSG00000155561 E018 9.208983 0.0341073317 4.064958e-01 6.334114e-01 7 135578916 135578926 11 + 1.007 0.881 -0.472
ENSG00000155561 E019 5.923029 0.0087409155 3.208649e-02 1.334694e-01 7 135578927 135578930 4 + 0.875 0.551 -1.346
ENSG00000155561 E020 437.372391 0.0009071529 7.218519e-12 6.378098e-10 7 135584832 135585007 176 + 2.640 2.480 -0.531
ENSG00000155561 E021 379.794150 0.0007464240 2.178634e-18 5.262904e-16 7 135587575 135587691 117 + 2.590 2.377 -0.710
ENSG00000155561 E022 379.830146 0.0001998391 3.919645e-22 1.475933e-19 7 135587855 135587992 138 + 2.587 2.382 -0.683
ENSG00000155561 E023 287.150099 0.0021803204 3.319120e-05 5.884975e-04 7 135591450 135591588 139 + 2.448 2.323 -0.418
ENSG00000155561 E024 152.418308 0.0002859380 7.832984e-06 1.697793e-04 7 135591589 135591600 12 + 2.177 2.038 -0.465
ENSG00000155561 E025 467.612788 0.0005659416 3.606287e-11 2.800322e-09 7 135592987 135593192 206 + 2.663 2.526 -0.457
ENSG00000155561 E026 511.102028 0.0040949329 3.921919e-05 6.772060e-04 7 135594547 135594729 183 + 2.704 2.558 -0.487
ENSG00000155561 E027 1.114885 0.0420589846 3.920938e-01   7 135597239 135597367 129 + 0.345 0.180 -1.240
ENSG00000155561 E028 298.029139 0.0003537513 2.038679e-11 1.666095e-09 7 135597368 135597418 51 + 2.473 2.315 -0.529
ENSG00000155561 E029 2.668511 0.0125047198 2.964008e-01 5.369252e-01 7 135597740 135597997 258 + 0.585 0.404 -0.890
ENSG00000155561 E030 501.034192 0.0002850917 6.456363e-09 3.156128e-07 7 135597998 135598207 210 + 2.684 2.582 -0.340
ENSG00000155561 E031 9.608002 0.0139746336 2.758088e-02 1.200468e-01 7 135598797 135598896 100 + 1.049 0.749 -1.143
ENSG00000155561 E032 366.757581 0.0003139100 3.411939e-06 8.300039e-05 7 135600870 135600969 100 + 2.545 2.452 -0.310
ENSG00000155561 E033 427.209880 0.0001449328 6.617018e-07 1.985023e-05 7 135601370 135601507 138 + 2.611 2.524 -0.291
ENSG00000155561 E034 535.820970 0.0002128326 1.900014e-08 8.376585e-07 7 135602805 135602994 190 + 2.711 2.619 -0.306
ENSG00000155561 E035 476.959168 0.0001271502 1.043473e-09 6.072846e-08 7 135604340 135604460 121 + 2.661 2.557 -0.347
ENSG00000155561 E036 272.916323 0.0002074242 4.531326e-08 1.825245e-06 7 135606145 135606146 2 + 2.424 2.297 -0.424
ENSG00000155561 E037 272.130786 0.0002056915 2.157133e-07 7.379751e-06 7 135606147 135606148 2 + 2.421 2.302 -0.399
ENSG00000155561 E038 453.844723 0.0007163348 7.438243e-07 2.195801e-05 7 135606149 135606210 62 + 2.639 2.536 -0.343
ENSG00000155561 E039 311.308574 0.0013657184 1.359401e-06 3.712188e-05 7 135606211 135606226 16 + 2.484 2.350 -0.446
ENSG00000155561 E040 509.104181 0.0001585290 3.122404e-05 5.591648e-04 7 135606751 135606870 120 + 2.679 2.615 -0.216
ENSG00000155561 E041 309.732339 0.0001714487 6.910425e-03 4.422646e-02 7 135606871 135606915 45 + 2.462 2.411 -0.168
ENSG00000155561 E042 194.079910 0.0013604752 2.068597e-02 9.829192e-02 7 135607247 135607249 3 + 2.267 2.198 -0.228
ENSG00000155561 E043 383.960472 0.0014583773 1.384876e-01 3.452360e-01 7 135607250 135607371 122 + 2.551 2.521 -0.100
ENSG00000155561 E044 0.000000       7 135613721 135613808 88 +      
ENSG00000155561 E045 179.154347 0.0011990702 1.604176e-01 3.774102e-01 7 135614159 135614170 12 + 2.224 2.188 -0.119
ENSG00000155561 E046 372.223302 0.0001508260 2.260406e-02 1.046050e-01 7 135614171 135614273 103 + 2.537 2.501 -0.121
ENSG00000155561 E047 526.579596 0.0012290423 1.650212e-01 3.839782e-01 7 135615916 135616065 150 + 2.684 2.662 -0.074
ENSG00000155561 E048 433.447608 0.0001534804 2.219112e-01 4.558073e-01 7 135616655 135616726 72 + 2.596 2.584 -0.039
ENSG00000155561 E049 665.676889 0.0001821234 9.028122e-02 2.642828e-01 7 135617090 135617247 158 + 2.783 2.768 -0.050
ENSG00000155561 E050 479.544973 0.0004739099 8.548961e-01 9.275431e-01 7 135617602 135617682 81 + 2.635 2.644 0.031
ENSG00000155561 E051 682.781935 0.0001379177 3.744864e-01 6.077116e-01 7 135618412 135618603 192 + 2.783 2.809 0.088
ENSG00000155561 E052 691.383569 0.0003389783 1.190316e-01 3.142868e-01 7 135619423 135619690 268 + 2.785 2.824 0.131
ENSG00000155561 E053 274.272079 0.0002043379 2.279714e-01 4.629406e-01 7 135619790 135619813 24 + 2.398 2.381 -0.058
ENSG00000155561 E054 311.272998 0.0006441653 9.332465e-01 9.687778e-01 7 135619814 135619848 35 + 2.445 2.456 0.035
ENSG00000155561 E055 392.683471 0.0002044374 8.034129e-01 8.982988e-01 7 135619849 135619888 40 + 2.544 2.562 0.058
ENSG00000155561 E056 595.926418 0.0003125642 6.061906e-02 2.042157e-01 7 135622777 135622925 149 + 2.717 2.763 0.154
ENSG00000155561 E057 648.950669 0.0003455049 4.814800e-03 3.361552e-02 7 135625164 135625355 192 + 2.750 2.810 0.200
ENSG00000155561 E058 509.585775 0.0008349006 1.176120e-02 6.548986e-02 7 135626240 135626361 122 + 2.644 2.710 0.219
ENSG00000155561 E059 481.784139 0.0018642309 6.855974e-05 1.089864e-03 7 135627973 135628111 139 + 2.602 2.722 0.398
ENSG00000155561 E060 536.494888 0.0001758555 1.561651e-12 1.551809e-10 7 135630344 135630470 127 + 2.641 2.774 0.443
ENSG00000155561 E061 1.100286 0.0350376007 4.318491e-01   7 135635315 135635563 249 + 0.258 0.404 0.921
ENSG00000155561 E062 2.345781 0.0092649498 2.787208e-01 5.188111e-01 7 135635564 135635580 17 + 0.419 0.610 0.921
ENSG00000155561 E063 533.581520 0.0001309254 2.258914e-15 3.612198e-13 7 135635581 135635657 77 + 2.635 2.780 0.484
ENSG00000155561 E064 288.752596 0.0008866363 5.784382e-08 2.273365e-06 7 135637931 135637936 6 + 2.367 2.521 0.515
ENSG00000155561 E065 632.065673 0.0001322075 5.651747e-26 3.126373e-23 7 135637937 135638059 123 + 2.697 2.873 0.585
ENSG00000155561 E066 588.530682 0.0003183545 1.590458e-38 2.433301e-35 7 135638557 135638683 127 + 2.641 2.879 0.794
ENSG00000155561 E067 684.104555 0.0013583185 3.190708e-22 1.223151e-19 7 135643192 135643358 167 + 2.705 2.948 0.809
ENSG00000155561 E068 281.206601 0.0018190581 1.065039e-13 1.319243e-11 7 135644895 135644898 4 + 2.317 2.563 0.818
ENSG00000155561 E069 529.804923 0.0010770897 1.279391e-25 6.941535e-23 7 135644899 135644978 80 + 2.588 2.843 0.848
ENSG00000155561 E070 468.363245 0.0025289385 1.680835e-12 1.661493e-10 7 135644979 135645018 40 + 2.543 2.779 0.785
ENSG00000155561 E071 763.745082 0.0048684027 8.682217e-10 5.133845e-08 7 135645468 135645596 129 + 2.747 3.006 0.861
ENSG00000155561 E072 9.162034 0.2721424589 8.495726e-01 9.247042e-01 7 135645841 135645977 137 + 0.977 0.947 -0.111
ENSG00000155561 E073 10.319664 0.0696605968 8.528469e-01 9.265920e-01 7 135646025 135646157 133 + 1.032 0.983 -0.180
ENSG00000155561 E074 669.204632 0.0024990220 6.189852e-14 8.005934e-12 7 135646158 135646231 74 + 2.698 2.936 0.792
ENSG00000155561 E075 711.421955 0.0060943358 8.961683e-09 4.261831e-07 7 135648404 135648757 354 + 2.711 2.983 0.906