ENSG00000149091

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000421244 ENSG00000149091 HEK293_OSMI2_6hA HEK293_TMG_6hB DGKZ protein_coding protein_coding 64.94069 105.6057 39.7971 20.0407 1.963177 -1.407727 32.969903 59.632241 19.966317 12.320687 0.99985168 -1.578044 0.4883708 0.55960000 0.5028333 -0.05676667 7.164329e-01 3.095282e-06 FALSE TRUE
ENST00000456247 ENSG00000149091 HEK293_OSMI2_6hA HEK293_TMG_6hB DGKZ protein_coding protein_coding 64.94069 105.6057 39.7971 20.0407 1.963177 -1.407727 6.044702 9.927821 1.311721 1.770746 0.04966827 -2.910512 0.0917375 0.09523333 0.0332000 -0.06203333 3.095282e-06 3.095282e-06 FALSE TRUE
ENST00000529698 ENSG00000149091 HEK293_OSMI2_6hA HEK293_TMG_6hB DGKZ protein_coding retained_intron 64.94069 105.6057 39.7971 20.0407 1.963177 -1.407727 9.333794 16.474093 4.482120 4.320125 0.25794884 -1.875606 0.1381667 0.15056667 0.1125333 -0.03803333 5.641548e-01 3.095282e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000149091 E001 0.0000000       11 46332905 46333487 583 +      
ENSG00000149091 E002 0.0000000       11 46338598 46338890 293 +      
ENSG00000149091 E003 0.0000000       11 46345267 46345402 136 +      
ENSG00000149091 E004 0.0000000       11 46345403 46345431 29 +      
ENSG00000149091 E005 0.0000000       11 46345432 46345433 2 +      
ENSG00000149091 E006 0.0000000       11 46345434 46345436 3 +      
ENSG00000149091 E007 0.0000000       11 46345437 46345585 149 +      
ENSG00000149091 E008 2.5051333 0.0099691259 8.811597e-02 2.602446e-01 11 46347463 46347510 48 + 0.201 0.541 2.070
ENSG00000149091 E009 2.2552834 0.0103169357 1.308414e-02 7.078873e-02 11 46347511 46347522 12 + 0.000 0.541 12.778
ENSG00000149091 E010 2.9098118 0.0190194531 3.939032e-02 1.531943e-01 11 46347523 46347556 34 + 0.201 0.619 2.422
ENSG00000149091 E011 7.5869264 0.0094953077 2.574656e-02 1.145196e-01 11 46347557 46347582 26 + 0.596 0.941 1.390
ENSG00000149091 E012 7.7481544 0.0048910880 1.894287e-02 9.224661e-02 11 46347583 46347587 5 + 0.596 0.950 1.426
ENSG00000149091 E013 165.3828026 0.0002549640 1.859483e-07 6.460373e-06 11 46347588 46347820 233 + 2.005 2.186 0.605
ENSG00000149091 E014 0.8203656 0.5174896623 4.047579e-01   11 46361522 46361605 84 + 0.000 0.276 11.305
ENSG00000149091 E015 0.5171231 1.0484990788 9.245507e-01   11 46361606 46361606 1 + 0.000 0.190 10.610
ENSG00000149091 E016 0.9630002 0.4265044443 8.222502e-01   11 46361607 46361706 100 + 0.199 0.276 0.614
ENSG00000149091 E017 1.8614615 0.2010976452 8.587234e-01 9.296962e-01 11 46361707 46361963 257 + 0.441 0.390 -0.275
ENSG00000149091 E018 5.5073955 0.0460691777 7.119900e-01 8.430819e-01 11 46366244 46366526 283 + 0.710 0.761 0.205
ENSG00000149091 E019 5.1680686 0.0053787521 8.628294e-01 9.319240e-01 11 46366527 46366705 179 + 0.710 0.733 0.097
ENSG00000149091 E020 6.6181968 0.0043630293 6.777204e-02 2.200832e-01 11 46366706 46366984 279 + 0.596 0.876 1.147
ENSG00000149091 E021 170.4985341 0.0002766618 6.332780e-02 2.102011e-01 11 46367291 46367314 24 + 2.118 2.176 0.194
ENSG00000149091 E022 299.4648719 0.0001711360 4.738808e-01 6.827220e-01 11 46367315 46367399 85 + 2.395 2.409 0.045
ENSG00000149091 E023 196.6306649 0.0005231932 4.588889e-01 6.724559e-01 11 46367652 46367654 3 + 2.244 2.215 -0.096
ENSG00000149091 E024 369.8106653 0.0001744468 8.164857e-02 2.481309e-01 11 46367655 46367747 93 + 2.531 2.489 -0.138
ENSG00000149091 E025 2.9216461 0.0779209248 7.327903e-01 8.558484e-01 11 46367748 46368001 254 + 0.596 0.519 -0.353
ENSG00000149091 E026 137.7618138 0.0003458786 5.898253e-01 7.635993e-01 11 46368002 46368004 3 + 2.088 2.065 -0.076
ENSG00000149091 E027 327.9678505 0.0003299699 6.186587e-02 2.070267e-01 11 46368005 46368079 75 + 2.481 2.432 -0.163
ENSG00000149091 E028 82.8815056 0.1355764099 2.456535e-03 2.004884e-02 11 46368080 46369363 1284 + 2.192 1.658 -1.799
ENSG00000149091 E029 23.7607590 0.1147471907 5.661751e-02 1.951283e-01 11 46369364 46369493 130 + 1.550 1.222 -1.137
ENSG00000149091 E030 349.0977931 0.0001796115 8.288405e-03 5.064811e-02 11 46369494 46369550 57 + 2.521 2.458 -0.209
ENSG00000149091 E031 13.4638475 0.1889965554 1.650818e-01 3.840737e-01 11 46369551 46369940 390 + 1.289 1.007 -1.007
ENSG00000149091 E032 395.0565766 0.0001347900 4.665275e-04 5.369508e-03 11 46369941 46370009 69 + 2.584 2.508 -0.253
ENSG00000149091 E033 343.7321191 0.0001566182 1.519722e-02 7.883066e-02 11 46371313 46371384 72 + 2.511 2.453 -0.192
ENSG00000149091 E034 349.0193207 0.0001716719 7.322379e-02 2.312815e-01 11 46371487 46371603 117 + 2.507 2.464 -0.145
ENSG00000149091 E035 229.2777646 0.0007129344 2.142290e-01 4.466324e-01 11 46371704 46371724 21 + 2.324 2.284 -0.133
ENSG00000149091 E036 278.7043937 0.0002498822 5.961658e-01 7.677889e-01 11 46371725 46371775 51 + 2.391 2.374 -0.057
ENSG00000149091 E037 331.7419162 0.0001929703 9.046790e-01 9.543099e-01 11 46372075 46372170 96 + 2.453 2.452 -0.002
ENSG00000149091 E038 378.3872527 0.0007133908 6.624077e-01 8.113793e-01 11 46372428 46372510 83 + 2.502 2.510 0.025
ENSG00000149091 E039 5.9891015 0.2083451172 6.136696e-02 2.058450e-01 11 46372511 46372616 106 + 1.061 0.645 -1.622
ENSG00000149091 E040 322.9805554 0.0005461133 3.153684e-01 5.553981e-01 11 46372617 46372677 61 + 2.423 2.445 0.074
ENSG00000149091 E041 4.0370949 0.1472200975 1.402207e-01 3.478388e-01 11 46372678 46372770 93 + 0.872 0.543 -1.373
ENSG00000149091 E042 381.5569363 0.0014321604 3.953783e-01 6.246391e-01 11 46372771 46372884 114 + 2.495 2.515 0.067
ENSG00000149091 E043 2.8920940 0.1550399291 2.765007e-01 5.164799e-01 11 46372885 46372897 13 + 0.708 0.470 -1.071
ENSG00000149091 E044 463.2143888 0.0003045308 5.647799e-01 7.466260e-01 11 46372961 46373101 141 + 2.606 2.590 -0.054
ENSG00000149091 E045 440.7392255 0.0002196014 4.179094e-01 6.420705e-01 11 46374157 46374235 79 + 2.588 2.567 -0.071
ENSG00000149091 E046 376.1703323 0.0002167982 1.666138e-01 3.860196e-01 11 46374399 46374428 30 + 2.531 2.496 -0.115
ENSG00000149091 E047 359.5086895 0.0005682114 8.257722e-01 9.113632e-01 11 46374429 46374454 26 + 2.484 2.483 -0.002
ENSG00000149091 E048 466.1331183 0.0003827459 1.247511e-01 3.233506e-01 11 46374604 46374666 63 + 2.624 2.587 -0.126
ENSG00000149091 E049 1.7022587 0.1859590719 8.012844e-01 8.970757e-01 11 46374667 46374765 99 + 0.337 0.389 0.307
ENSG00000149091 E050 517.9359241 0.0032404241 9.028873e-01 9.532844e-01 11 46374766 46374839 74 + 2.641 2.638 -0.009
ENSG00000149091 E051 540.1817429 0.0019677525 1.022799e-01 2.858751e-01 11 46374934 46375023 90 + 2.626 2.666 0.134
ENSG00000149091 E052 266.7409697 0.0002654904 2.718448e-02 1.188454e-01 11 46375024 46375045 22 + 2.312 2.367 0.185
ENSG00000149091 E053 577.7181724 0.0028862336 5.908887e-02 2.007251e-01 11 46375432 46375631 200 + 2.645 2.699 0.179
ENSG00000149091 E054 445.8267544 0.0033483141 8.716013e-02 2.585602e-01 11 46375851 46375951 101 + 2.535 2.586 0.168
ENSG00000149091 E055 367.9987767 0.0001908056 4.157352e-01 6.403349e-01 11 46376066 46376145 80 + 2.486 2.500 0.048
ENSG00000149091 E056 403.4515239 0.0006332212 8.377377e-01 9.181745e-01 11 46376328 46376397 70 + 2.536 2.537 0.001
ENSG00000149091 E057 0.7794795 0.0171832460 8.785405e-01   11 46376520 46376523 4 + 0.201 0.232 0.262
ENSG00000149091 E058 354.4684640 0.0001877662 2.678222e-01 5.074467e-01 11 46376524 46376564 41 + 2.465 2.486 0.071
ENSG00000149091 E059 6.2423663 0.0825016631 4.794465e-01 6.867729e-01 11 46376565 46377072 508 + 0.903 0.754 -0.584
ENSG00000149091 E060 346.6032337 0.0001601042 3.017262e-02 1.278500e-01 11 46377073 46377147 75 + 2.435 2.481 0.154
ENSG00000149091 E061 325.1657889 0.0002486365 3.381971e-04 4.121835e-03 11 46377148 46377212 65 + 2.375 2.459 0.280
ENSG00000149091 E062 342.5228462 0.0040091841 5.615484e-02 1.939827e-01 11 46377213 46377967 755 + 2.405 2.475 0.235
ENSG00000149091 E063 48.3717445 0.0031767636 3.376412e-01 5.760395e-01 11 46377968 46377969 2 + 1.574 1.632 0.196
ENSG00000149091 E064 73.5838617 0.0006704586 9.140273e-01 9.591427e-01 11 46377970 46378197 228 + 1.798 1.799 0.002
ENSG00000149091 E065 207.9748266 0.0007198454 9.996547e-01 1.000000e+00 11 46378198 46378229 32 + 2.252 2.246 -0.023
ENSG00000149091 E066 21.5546484 0.1007441832 4.017304e-02 1.551371e-01 11 46378230 46378456 227 + 1.517 1.174 -1.194
ENSG00000149091 E067 290.2748372 0.0003059699 3.063792e-01 5.470418e-01 11 46378457 46378500 44 + 2.415 2.384 -0.103
ENSG00000149091 E068 122.5394381 0.0730955401 9.933583e-03 5.786741e-02 11 46378501 46378893 393 + 2.264 1.904 -1.208
ENSG00000149091 E069 54.1859703 0.0325721516 7.249377e-04 7.650929e-03 11 46378894 46378990 97 + 1.914 1.557 -1.211
ENSG00000149091 E070 411.7796314 0.0002159895 9.251471e-01 9.648380e-01 11 46378991 46379111 121 + 2.545 2.542 -0.008
ENSG00000149091 E071 280.0530459 0.0002260478 1.645610e-01 3.834708e-01 11 46379203 46379236 34 + 2.408 2.370 -0.127
ENSG00000149091 E072 59.7474239 0.0740063531 1.913927e-02 9.293176e-02 11 46379237 46379453 217 + 1.939 1.608 -1.117
ENSG00000149091 E073 23.5545387 0.0162315580 1.680110e-02 8.472872e-02 11 46379454 46379468 15 + 1.492 1.252 -0.834
ENSG00000149091 E074 457.3552374 0.0001417638 1.039750e-01 2.888073e-01 11 46379469 46379568 100 + 2.569 2.597 0.095
ENSG00000149091 E075 284.7877190 0.0004050124 5.740431e-01 7.530680e-01 11 46379831 46379848 18 + 2.377 2.386 0.030
ENSG00000149091 E076 887.7791652 0.0007397554 8.256985e-08 3.129270e-06 11 46379849 46380554 706 + 2.799 2.896 0.325