ENSG00000141279

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000322157 ENSG00000141279 HEK293_OSMI2_6hA HEK293_TMG_6hB NPEPPS protein_coding protein_coding 53.87481 36.11867 72.61988 8.926955 4.274175 1.007419 23.458672 23.7007667 24.142035 5.9148387 1.3784831 0.02660242 0.43971667 0.65766667 0.3361333 -0.32153333 0.146695528 0.0003430278 FALSE TRUE
ENST00000530173 ENSG00000141279 HEK293_OSMI2_6hA HEK293_TMG_6hB NPEPPS protein_coding protein_coding 53.87481 36.11867 72.61988 8.926955 4.274175 1.007419 6.768082 0.4106778 20.624072 0.4106778 2.8213341 5.61616919 0.11752500 0.00790000 0.2825667 0.27466667 0.009874396 0.0003430278 FALSE TRUE
ENST00000534814 ENSG00000141279 HEK293_OSMI2_6hA HEK293_TMG_6hB NPEPPS protein_coding processed_transcript 53.87481 36.11867 72.61988 8.926955 4.274175 1.007419 10.947443 3.6101997 14.908041 2.3947644 3.3534881 2.04291694 0.18241667 0.09443333 0.2024000 0.10796667 0.781439384 0.0003430278 FALSE FALSE
ENST00000677120 ENSG00000141279 HEK293_OSMI2_6hA HEK293_TMG_6hB NPEPPS protein_coding protein_coding 53.87481 36.11867 72.61988 8.926955 4.274175 1.007419 4.955926 3.9963654 4.518995 0.9084469 0.1036032 0.17689700 0.09749167 0.11153333 0.0625000 -0.04903333 0.003928294 0.0003430278 TRUE TRUE
ENST00000678902 ENSG00000141279 HEK293_OSMI2_6hA HEK293_TMG_6hB NPEPPS protein_coding nonsense_mediated_decay 53.87481 36.11867 72.61988 8.926955 4.274175 1.007419 2.755963 1.1221324 0.000000 1.1221324 0.0000000 -6.82289890 0.06742500 0.02156667 0.0000000 -0.02156667 0.809614221 0.0003430278 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000141279 E001 0.0000000       17 47522942 47522944 3 +      
ENSG00000141279 E002 0.0000000       17 47522945 47522951 7 +      
ENSG00000141279 E003 0.0000000       17 47522952 47522956 5 +      
ENSG00000141279 E004 0.0000000       17 47522957 47522967 11 +      
ENSG00000141279 E005 0.0000000       17 47522968 47522976 9 +      
ENSG00000141279 E006 1.4002042 0.0151212664 9.623473e-01 9.831718e-01 17 47522977 47523063 87 + 0.379 0.397 0.102
ENSG00000141279 E007 0.1779838 0.0505702158 6.315930e-01   17 47530529 47530663 135 + 0.107 0.000 -9.170
ENSG00000141279 E008 9.4423968 0.0849143509 3.145070e-02 1.316341e-01 17 47531108 47531215 108 + 0.804 1.189 1.433
ENSG00000141279 E009 9.4010782 0.0671235377 3.532817e-02 1.424357e-01 17 47531216 47531221 6 + 0.822 1.178 1.321
ENSG00000141279 E010 11.7092272 0.1106499166 1.039425e-01 2.887517e-01 17 47531222 47531258 37 + 0.939 1.242 1.098
ENSG00000141279 E011 9.8616724 0.0647887523 7.727864e-02 2.393698e-01 17 47531259 47531268 10 + 0.875 1.170 1.087
ENSG00000141279 E012 11.8080925 0.0032365014 1.293061e-01 3.306511e-01 17 47531269 47531281 13 + 1.020 1.183 0.588
ENSG00000141279 E013 56.1124057 0.0194988244 9.397410e-02 2.711066e-01 17 47531282 47531387 106 + 1.675 1.839 0.556
ENSG00000141279 E014 33.6711330 0.0199676274 2.710224e-01 5.110007e-01 17 47531388 47531389 2 + 1.478 1.605 0.435
ENSG00000141279 E015 51.6478351 0.0086268290 9.539978e-01 9.789248e-01 17 47531390 47531416 27 + 1.711 1.733 0.075
ENSG00000141279 E016 146.8365538 0.0092576791 5.327794e-01 7.240478e-01 17 47531417 47531555 139 + 2.175 2.157 -0.060
ENSG00000141279 E017 84.0510089 0.0059605977 2.417596e-03 1.979572e-02 17 47545909 47545993 85 + 1.986 1.837 -0.500
ENSG00000141279 E018 0.0000000       17 47548190 47548327 138 +      
ENSG00000141279 E019 0.0000000       17 47559612 47559687 76 +      
ENSG00000141279 E020 43.2498058 0.0010216935 8.332896e-05 1.284394e-03 17 47569417 47569428 12 + 1.722 1.516 -0.703
ENSG00000141279 E021 95.3232996 0.0065047321 4.506243e-03 3.197363e-02 17 47569429 47569494 66 + 2.033 1.899 -0.452
ENSG00000141279 E022 1.1246762 0.0153787590 4.240408e-01   17 47577045 47577080 36 + 0.379 0.243 -0.896
ENSG00000141279 E023 1.4287265 0.0125576608 1.900597e-01 4.170145e-01 17 47577081 47577160 80 + 0.469 0.243 -1.381
ENSG00000141279 E024 131.0738478 0.0070307191 1.197766e-02 6.634890e-02 17 47579390 47579455 66 + 2.163 2.049 -0.379
ENSG00000141279 E025 123.5922990 0.0082249748 2.322386e-02 1.066681e-01 17 47579456 47579511 56 + 2.136 2.024 -0.374
ENSG00000141279 E026 4.6768112 0.0063463015 8.896828e-02 2.618701e-01 17 47579512 47582200 2689 + 0.835 0.602 -0.963
ENSG00000141279 E027 0.9340683 0.4113206588 8.129698e-01   17 47582201 47582592 392 + 0.319 0.246 -0.508
ENSG00000141279 E028 0.4764247 0.0213890781 7.435582e-01   17 47582593 47582712 120 + 0.192 0.138 -0.570
ENSG00000141279 E029 0.0000000       17 47582713 47582741 29 +      
ENSG00000141279 E030 78.3293483 0.0009681582 2.227993e-01 4.567908e-01 17 47582742 47582797 56 + 1.910 1.873 -0.124
ENSG00000141279 E031 73.4693961 0.0115312529 9.126680e-01 9.584424e-01 17 47582798 47582826 29 + 1.862 1.872 0.033
ENSG00000141279 E032 82.9384985 0.0057126913 2.229005e-01 4.568625e-01 17 47582827 47582849 23 + 1.940 1.891 -0.166
ENSG00000141279 E033 322.1881045 0.0058154539 2.299283e-02 1.059241e-01 17 47585500 47585700 201 + 2.537 2.460 -0.254
ENSG00000141279 E034 6.8590359 0.0046129989 3.670883e-03 2.732295e-02 17 47585701 47585713 13 + 1.008 0.641 -1.445
ENSG00000141279 E035 7.4371365 0.0058418765 8.734481e-03 5.263679e-02 17 47585714 47585745 32 + 1.030 0.710 -1.238
ENSG00000141279 E036 11.6321981 0.1715659860 2.536893e-01 4.920356e-01 17 47585746 47586147 402 + 1.179 0.945 -0.856
ENSG00000141279 E037 236.6198403 0.0088180078 1.437463e-01 3.530009e-01 17 47586148 47586244 97 + 2.391 2.344 -0.157
ENSG00000141279 E038 2.3282878 0.0097676022 2.095796e-01 4.413949e-01 17 47586245 47586249 5 + 0.426 0.640 1.013
ENSG00000141279 E039 0.7664957 0.0191472722 8.810402e-01   17 47586250 47586290 41 + 0.263 0.242 -0.157
ENSG00000141279 E040 1.8919797 0.0102523941 5.197101e-02 1.843332e-01 17 47586291 47586335 45 + 0.578 0.243 -1.895
ENSG00000141279 E041 2.8364592 0.0110280617 6.743263e-02 2.193123e-01 17 47586336 47586352 17 + 0.690 0.397 -1.381
ENSG00000141279 E042 4.5770584 0.0061009058 3.379026e-03 2.563486e-02 17 47586353 47586364 12 + 0.885 0.458 -1.837
ENSG00000141279 E043 187.6660802 0.0057807383 5.136478e-03 3.533407e-02 17 47586365 47586398 34 + 2.314 2.207 -0.356
ENSG00000141279 E044 5.9475186 0.0264412761 3.680261e-02 1.464029e-01 17 47586399 47586522 124 + 0.944 0.641 -1.207
ENSG00000141279 E045 1.6056652 0.0278073968 1.395059e-01 3.467342e-01 17 47586523 47586660 138 + 0.508 0.243 -1.564
ENSG00000141279 E046 1.7270972 0.3384001355 6.271252e-01 7.886106e-01 17 47586661 47586754 94 + 0.477 0.334 -0.785
ENSG00000141279 E047 4.7056883 0.8318300946 2.481607e-01 4.860098e-01 17 47586755 47587122 368 + 0.849 0.572 -1.150
ENSG00000141279 E048 2.8167139 0.5646313657 9.304962e-01 9.672356e-01 17 47587123 47587229 107 + 0.556 0.584 0.125
ENSG00000141279 E049 200.3481110 0.0032934031 3.697670e-02 1.468490e-01 17 47587230 47587281 52 + 2.324 2.265 -0.195
ENSG00000141279 E050 186.4877314 0.0007211762 2.930831e-02 1.253141e-01 17 47587282 47587344 63 + 2.289 2.242 -0.157
ENSG00000141279 E051 0.9941679 0.0834109488 7.150039e-01   17 47587345 47587556 212 + 0.263 0.329 0.450
ENSG00000141279 E052 167.4175649 0.0004555219 7.227113e-02 2.293432e-01 17 47590717 47590814 98 + 2.237 2.200 -0.123
ENSG00000141279 E053 101.2642333 0.0026246061 5.777724e-01 7.556384e-01 17 47590815 47590881 67 + 1.985 2.029 0.148
ENSG00000141279 E054 0.1779838 0.0505702158 6.315930e-01   17 47591729 47591903 175 + 0.107 0.000 -9.170
ENSG00000141279 E055 2.0784354 0.0283094688 9.221910e-01 9.633748e-01 17 47591904 47591955 52 + 0.470 0.460 -0.047
ENSG00000141279 E056 159.6626911 0.0097534353 4.457010e-01 6.625568e-01 17 47591956 47592060 105 + 2.211 2.187 -0.079
ENSG00000141279 E057 201.6377432 0.0028313134 1.517516e-01 3.648640e-01 17 47592485 47592545 61 + 2.315 2.282 -0.112
ENSG00000141279 E058 1.0595873 0.0145483000 1.024400e-01   17 47592546 47592680 135 + 0.426 0.138 -2.157
ENSG00000141279 E059 2.6477337 0.4041823576 8.602076e-01 9.304593e-01 17 47596067 47596352 286 + 0.542 0.573 0.145
ENSG00000141279 E060 315.6400637 0.0003797468 1.069694e-01 2.939461e-01 17 47596353 47596462 110 + 2.504 2.484 -0.066
ENSG00000141279 E061 158.3877477 0.0006005083 3.816373e-01 6.136282e-01 17 47599676 47599679 4 + 2.206 2.194 -0.041
ENSG00000141279 E062 243.6121141 0.0002331979 1.644230e-01 3.832864e-01 17 47599680 47599739 60 + 2.393 2.375 -0.060
ENSG00000141279 E063 1.7509223 0.0111692631 1.851796e-01 4.107702e-01 17 47599740 47599743 4 + 0.325 0.559 1.236
ENSG00000141279 E064 152.1162142 0.0004023759 8.175068e-01 9.066485e-01 17 47601608 47601613 6 + 2.177 2.185 0.026
ENSG00000141279 E065 304.5141234 0.0179457783 5.610571e-01 7.440431e-01 17 47601614 47601715 102 + 2.461 2.506 0.150
ENSG00000141279 E066 220.9195393 0.0906829574 5.059439e-01 7.048996e-01 17 47601716 47601747 32 + 2.319 2.372 0.175
ENSG00000141279 E067 1.3354204 0.3486925342 2.096834e-01   17 47601748 47601985 238 + 0.475 0.139 -2.396
ENSG00000141279 E068 2.2775696 0.0156455074 1.939130e-01 4.220335e-01 17 47603494 47603914 421 + 0.608 0.397 -1.034
ENSG00000141279 E069 357.7361540 1.6528932640 5.728269e-01 7.522457e-01 17 47603915 47604049 135 + 2.491 2.618 0.422
ENSG00000141279 E070 383.2478983 0.0364331768 5.161463e-01 7.123504e-01 17 47605333 47605465 133 + 2.556 2.611 0.181
ENSG00000141279 E071 283.2291705 0.0010316230 1.811535e-01 4.054888e-01 17 47605466 47605552 87 + 2.455 2.438 -0.057
ENSG00000141279 E072 387.2490944 0.0061619947 8.088878e-01 9.015232e-01 17 47612460 47612602 143 + 2.578 2.592 0.044
ENSG00000141279 E073 242.3618448 0.0087804751 6.740961e-01 8.189800e-01 17 47613669 47613725 57 + 2.361 2.406 0.149
ENSG00000141279 E074 365.4462724 0.0108891474 4.589994e-01 6.724900e-01 17 47618350 47618457 108 + 2.566 2.551 -0.052
ENSG00000141279 E075 418.4386461 0.0001992869 7.511484e-01 8.674755e-01 17 47619009 47619164 156 + 2.610 2.631 0.070
ENSG00000141279 E076 6.8641744 0.0618667491 8.528004e-01 9.265696e-01 17 47619165 47619277 113 + 0.902 0.870 -0.122
ENSG00000141279 E077 4.5743610 0.0896302666 7.289308e-01 8.535598e-01 17 47619278 47619322 45 + 0.717 0.769 0.211
ENSG00000141279 E078 4.6636031 0.0479403859 7.564586e-01 8.705114e-01 17 47619323 47619372 50 + 0.760 0.712 -0.196
ENSG00000141279 E079 6.7208748 0.0045548020 7.057540e-01 8.391969e-01 17 47619373 47619495 123 + 0.901 0.867 -0.130
ENSG00000141279 E080 10.7020467 0.2591347916 9.095365e-01 9.568785e-01 17 47619496 47619736 241 + 1.042 1.093 0.186
ENSG00000141279 E081 181.1650486 0.0441198001 2.637146e-01 5.029966e-01 17 47619737 47619784 48 + 2.209 2.313 0.347
ENSG00000141279 E082 7.7912468 0.0877986804 3.255008e-01 5.647351e-01 17 47619785 47620214 430 + 1.002 0.824 -0.672
ENSG00000141279 E083 299.0078134 1.5599788760 4.832834e-01 6.892863e-01 17 47621768 47621970 203 + 2.369 2.580 0.704
ENSG00000141279 E084 1046.6149631 0.0004325291 7.151666e-06 1.567524e-04 17 47621971 47623374 1404 + 2.979 3.059 0.264
ENSG00000141279 E085 36.0717965 0.0031425838 4.591237e-07 1.436172e-05 17 47623797 47624140 344 + 1.386 1.720 1.141
ENSG00000141279 E086 34.4292748 0.0137344530 3.016056e-05 5.422929e-04 17 47624141 47624445 305 + 1.351 1.708 1.222
ENSG00000141279 E087 25.6265704 0.0414025948 8.189639e-05 1.266541e-03 17 47624446 47624665 220 + 1.134 1.629 1.720