ENSG00000141027

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000395849 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding protein_coding 21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 2.5993737 7.2605806 0.000000 1.7406439 0.0000000 -9.5059268 0.11342083 0.25646667 0.00000000 -0.25646667 1.374513e-30 1.374513e-30 FALSE TRUE
ENST00000464381 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding retained_intron 21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 2.2362459 2.9709691 0.000000 1.0474070 0.0000000 -8.2196376 0.09960417 0.10013333 0.00000000 -0.10013333 1.597314e-11 1.374513e-30 FALSE TRUE
MSTRG.13733.12 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding   21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 1.5171867 0.0000000 3.519067 0.0000000 0.2636438 8.4631428 0.07098750 0.00000000 0.14426667 0.14426667 4.515222e-27 1.374513e-30 FALSE TRUE
MSTRG.13733.13 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding   21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 0.8475363 0.2992566 1.700842 0.1670426 0.2810207 2.4678301 0.03861250 0.01220000 0.06983333 0.05763333 2.464591e-01 1.374513e-30 FALSE TRUE
MSTRG.13733.2 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding   21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 1.9824549 2.6523971 2.274914 0.8532462 0.2350466 -0.2205860 0.08873750 0.09000000 0.09360000 0.00360000 9.823007e-01 1.374513e-30 TRUE TRUE
MSTRG.13733.6 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding   21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 2.6106065 2.5580029 4.342965 0.4740427 0.5090657 0.7613515 0.11983333 0.09283333 0.17816667 0.08533333 4.722015e-02 1.374513e-30 FALSE TRUE
MSTRG.13733.7 ENSG00000141027 HEK293_OSMI2_6hA HEK293_TMG_6hB NCOR1 protein_coding   21.9265 27.53631 24.35601 4.807621 0.2899023 -0.1769889 3.0154287 2.6534878 4.256165 0.3312520 1.2019296 0.6796230 0.13915833 0.09860000 0.17376667 0.07516667 5.534043e-01 1.374513e-30 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000141027 E001 7.6324923 0.0038036199 5.535890e-01 7.387871e-01 17 16029157 16029688 532 - 0.893 0.973 0.299
ENSG00000141027 E002 6.6819578 0.0064106263 4.792341e-02 1.748445e-01 17 16029689 16029902 214 - 0.728 0.989 1.009
ENSG00000141027 E003 6.1088824 0.0048639629 7.395113e-01 8.601213e-01 17 16029903 16030147 245 - 0.858 0.827 -0.120
ENSG00000141027 E004 4.1951730 0.0683527779 9.818775e-01 9.927370e-01 17 16030148 16030199 52 - 0.703 0.706 0.009
ENSG00000141027 E005 16.4655433 0.0024274309 2.504892e-01 4.885217e-01 17 16030200 16030294 95 - 1.192 1.303 0.389
ENSG00000141027 E006 102.5636773 0.0139404111 6.830606e-02 2.213011e-01 17 16030295 16031208 914 - 1.933 2.086 0.512
ENSG00000141027 E007 21.6855840 0.0025871694 9.965898e-01 9.999763e-01 17 16031209 16031240 32 - 1.344 1.358 0.048
ENSG00000141027 E008 21.0096855 0.0027736118 6.426655e-01 7.986573e-01 17 16031241 16031375 135 - 1.319 1.370 0.176
ENSG00000141027 E009 7.3786465 0.0278275606 2.798339e-01 5.199255e-01 17 16031376 16031385 10 - 0.839 1.011 0.649
ENSG00000141027 E010 9.4059046 0.0197337788 2.698151e-01 5.097520e-01 17 16031386 16031403 18 - 0.942 1.101 0.583
ENSG00000141027 E011 181.8439684 0.0034624014 2.149766e-06 5.561848e-05 17 16031404 16031884 481 - 2.151 2.354 0.679
ENSG00000141027 E012 123.0528041 0.0013331690 2.877501e-06 7.167856e-05 17 16031885 16031987 103 - 1.992 2.175 0.614
ENSG00000141027 E013 161.2818536 0.0002831095 2.509675e-06 6.365952e-05 17 16031988 16032091 104 - 2.134 2.281 0.492
ENSG00000141027 E014 331.1979343 0.0005411744 1.642845e-12 1.626780e-10 17 16032092 16032432 341 - 2.432 2.602 0.564
ENSG00000141027 E015 109.5274629 0.0004155704 1.501062e-09 8.483023e-08 17 16032433 16032472 40 - 1.925 2.148 0.747
ENSG00000141027 E016 88.7083328 0.0004542015 1.376130e-09 7.821233e-08 17 16032473 16032483 11 - 1.818 2.064 0.827
ENSG00000141027 E017 243.7703693 0.0002546420 3.708188e-17 7.487938e-15 17 16034765 16034941 177 - 2.271 2.483 0.707
ENSG00000141027 E018 99.6683111 0.0004354424 6.662363e-04 7.149590e-03 17 16034942 16034944 3 - 1.931 2.067 0.457
ENSG00000141027 E019 1.4757566 0.6170286013 6.373570e-01 7.952763e-01 17 16039220 16039432 213 - 0.295 0.448 0.894
ENSG00000141027 E020 185.3571941 0.0002710866 1.596393e-11 1.326991e-09 17 16039433 16039516 84 - 2.165 2.358 0.646
ENSG00000141027 E021 194.9922719 0.0039197082 1.431421e-09 8.111053e-08 17 16039517 16039654 138 - 2.150 2.403 0.844
ENSG00000141027 E022 1.6418719 0.0279335631 2.397577e-01 4.763806e-01 17 16039655 16040108 454 - 0.502 0.302 -1.116
ENSG00000141027 E023 81.0262753 0.1177356972 3.493106e-02 1.414106e-01 17 16040441 16040444 4 - 1.726 2.052 1.096
ENSG00000141027 E024 102.8535706 0.1945689150 7.255975e-02 2.298898e-01 17 16040445 16040491 47 - 1.828 2.154 1.095
ENSG00000141027 E025 65.0733179 0.7332128173 2.140341e-01 4.463864e-01 17 16040492 16040494 3 - 1.606 1.970 1.230
ENSG00000141027 E026 5.8088706 0.2323701647 1.088292e-01 2.971156e-01 17 16040495 16040659 165 - 0.607 0.996 1.551
ENSG00000141027 E027 2.0674202 0.5897011660 8.574153e-01 9.290425e-01 17 16046892 16046899 8 - 0.510 0.442 -0.341
ENSG00000141027 E028 3.1321690 0.2417432988 9.302584e-01 9.671034e-01 17 16046900 16046950 51 - 0.613 0.611 -0.012
ENSG00000141027 E029 78.1580484 0.0789009160 2.369585e-02 1.081602e-01 17 16046951 16046989 39 - 1.728 2.027 1.008
ENSG00000141027 E030 139.4667814 0.0005782731 2.127610e-09 1.165163e-07 17 16046990 16047093 104 - 2.039 2.242 0.679
ENSG00000141027 E031 182.6509429 0.0014099850 2.032688e-04 2.711257e-03 17 16048845 16048985 141 - 2.193 2.325 0.444
ENSG00000141027 E032 68.9023577 0.0058059531 7.451142e-02 2.338351e-01 17 16048986 16048988 3 - 1.782 1.896 0.384
ENSG00000141027 E033 1.9213889 0.5866366036 9.269392e-01 9.655236e-01 17 16048989 16049397 409 - 0.417 0.494 0.398
ENSG00000141027 E034 1.3363439 0.6505346186 6.517455e-01   17 16056974 16057513 540 - 0.410 0.309 -0.601
ENSG00000141027 E035 248.5283686 0.0007931291 5.854789e-04 6.451741e-03 17 16057514 16057737 224 - 2.342 2.445 0.342
ENSG00000141027 E036 192.0863975 0.0002580379 1.048777e-04 1.556602e-03 17 16057907 16058064 158 - 2.225 2.339 0.382
ENSG00000141027 E037 0.1723744 0.0558251207 4.589885e-01   17 16058065 16058336 272 - 0.000 0.126 9.302
ENSG00000141027 E038 171.4942545 0.0002594643 1.986169e-04 2.660283e-03 17 16058471 16058599 129 - 2.176 2.291 0.386
ENSG00000141027 E039 265.8818628 0.0002734010 6.713368e-06 1.485645e-04 17 16061401 16061757 357 - 2.366 2.480 0.381
ENSG00000141027 E040 121.5674391 0.0003908102 1.444245e-04 2.032704e-03 17 16061758 16061866 109 - 2.014 2.152 0.462
ENSG00000141027 E041 84.8987039 0.0004269230 1.119703e-01 3.023602e-01 17 16061867 16061894 28 - 1.897 1.971 0.250
ENSG00000141027 E042 143.8142031 0.0003284550 2.967594e-03 2.320284e-02 17 16062105 16062270 166 - 2.111 2.213 0.342
ENSG00000141027 E043 118.5806646 0.0004174399 2.544633e-02 1.135828e-01 17 16064068 16064187 120 - 2.032 2.119 0.291
ENSG00000141027 E044 148.6261183 0.0005481245 8.491831e-03 5.157017e-02 17 16064870 16065019 150 - 2.126 2.220 0.314
ENSG00000141027 E045 201.7165106 0.0008313948 4.693566e-01 6.795941e-01 17 16065485 16065691 207 - 2.290 2.326 0.118
ENSG00000141027 E046 64.0180359 0.0006391676 5.679850e-01 7.487612e-01 17 16065692 16065694 3 - 1.820 1.809 -0.039
ENSG00000141027 E047 1.7445930 0.1827466897 5.049626e-01 7.042835e-01 17 16065695 16065885 191 - 0.507 0.363 -0.758
ENSG00000141027 E048 184.3800230 0.0002705009 4.900978e-01 6.940565e-01 17 16067894 16068121 228 - 2.254 2.285 0.106
ENSG00000141027 E049 0.5227326 0.5678839220 6.612150e-01   17 16068122 16068412 291 - 0.119 0.227 1.118
ENSG00000141027 E050 129.5169502 0.0003757296 6.046892e-01 7.733004e-01 17 16070165 16070298 134 - 2.104 2.134 0.099
ENSG00000141027 E051 117.5854620 0.0004554711 2.326688e-01 4.682384e-01 17 16070299 16070390 92 - 2.090 2.063 -0.089
ENSG00000141027 E052 143.3339333 0.0004517004 3.600631e-01 5.957578e-01 17 16070391 16070525 135 - 2.167 2.151 -0.052
ENSG00000141027 E053 219.3812205 0.0002868158 6.900680e-03 4.418740e-02 17 16071409 16071665 257 - 2.371 2.317 -0.179
ENSG00000141027 E054 119.8375250 0.0041569311 1.154301e-02 6.457598e-02 17 16072145 16072228 84 - 2.132 2.025 -0.357
ENSG00000141027 E055 134.0925733 0.0023600910 4.512361e-04 5.233951e-03 17 16073429 16073569 141 - 2.188 2.063 -0.417
ENSG00000141027 E056 152.6735948 0.0010084606 4.126799e-05 7.069048e-04 17 16075534 16075702 169 - 2.241 2.122 -0.399
ENSG00000141027 E057 126.5397279 0.0046427434 5.401720e-03 3.669932e-02 17 16079964 16080064 101 - 2.158 2.045 -0.381
ENSG00000141027 E058 0.1308682 0.0326491905 4.617813e-01   17 16080351 16080407 57 - 0.000 0.125 9.296
ENSG00000141027 E059 119.0801365 0.0004239893 1.624873e-07 5.734431e-06 17 16080408 16080509 102 - 2.153 1.991 -0.543
ENSG00000141027 E060 0.4952057 0.3482377037 7.238067e-01   17 16080510 16080513 4 - 0.210 0.127 -0.879
ENSG00000141027 E061 124.7991700 0.0003458967 1.963366e-05 3.765383e-04 17 16080607 16080727 121 - 2.157 2.032 -0.419
ENSG00000141027 E062 111.1566158 0.0004140662 5.892153e-04 6.483239e-03 17 16086282 16086398 117 - 2.099 1.994 -0.352
ENSG00000141027 E063 65.8570258 0.0006329683 4.252903e-04 4.979253e-03 17 16086399 16086442 44 - 1.890 1.746 -0.486
ENSG00000141027 E064 44.2330415 0.0022157152 2.033206e-01 4.337044e-01 17 16087172 16087345 174 - 1.680 1.620 -0.205
ENSG00000141027 E065 2.5968167 0.0113715178 2.751526e-01 5.151770e-01 17 16091564 16091862 299 - 0.644 0.478 -0.762
ENSG00000141027 E066 153.7212380 0.0003913216 9.246889e-07 2.652524e-05 17 16091863 16092058 196 - 2.251 2.119 -0.443
ENSG00000141027 E067 110.1453107 0.0113853016 6.455434e-03 4.195489e-02 17 16098367 16098496 130 - 2.116 1.967 -0.501
ENSG00000141027 E068 263.8138816 0.0002268546 7.983628e-15 1.189301e-12 17 16101250 16101717 468 - 2.497 2.335 -0.540
ENSG00000141027 E069 91.2509551 0.0030454076 7.392414e-04 7.774349e-03 17 16101718 16101757 40 - 2.027 1.884 -0.481
ENSG00000141027 E070 73.4225577 0.0005335115 2.018231e-04 2.694937e-03 17 16101758 16101805 48 - 1.936 1.793 -0.482
ENSG00000141027 E071 111.2274051 0.0006006573 9.639197e-11 6.857802e-09 17 16108786 16108912 127 - 2.140 1.924 -0.727
ENSG00000141027 E072 113.3580675 0.0010267523 4.685894e-08 1.881704e-06 17 16117888 16118027 140 - 2.137 1.951 -0.627
ENSG00000141027 E073 68.0121408 0.0006429407 2.853680e-05 5.167632e-04 17 16119423 16119485 63 - 1.915 1.745 -0.573
ENSG00000141027 E074 72.8456077 0.0068288655 8.854614e-02 2.610835e-01 17 16121052 16121269 218 - 1.908 1.829 -0.267
ENSG00000141027 E075 0.0000000       17 16122610 16122635 26 -      
ENSG00000141027 E076 13.0548889 0.0301611497 1.228370e-01 3.202172e-01 17 16126082 16126106 25 - 1.039 1.256 0.774
ENSG00000141027 E077 8.4481945 0.0352248249 9.759006e-02 2.775611e-01 17 16126107 16126131 25 - 0.856 1.097 0.900
ENSG00000141027 E078 22.9531569 0.0029558104 9.523140e-01 9.781349e-01 17 16126132 16126206 75 - 1.385 1.394 0.032
ENSG00000141027 E079 8.0375690 0.0040717444 4.354004e-01 6.552788e-01 17 16126207 16126209 3 - 0.999 0.923 -0.285
ENSG00000141027 E080 52.1458129 0.0006989017 6.738130e-04 7.214030e-03 17 16137311 16137412 102 - 1.797 1.643 -0.524
ENSG00000141027 E081 59.3551298 0.0006521572 9.728953e-05 1.461219e-03 17 16138158 16138212 55 - 1.856 1.687 -0.571
ENSG00000141027 E082 129.2925384 0.0003837317 5.705479e-10 3.474082e-08 17 16139008 16139186 179 - 2.198 2.011 -0.624
ENSG00000141027 E083 102.6199185 0.0003945370 1.212490e-09 6.977593e-08 17 16143606 16143696 91 - 2.103 1.897 -0.690
ENSG00000141027 E084 133.7688827 0.0003212418 7.524097e-15 1.127219e-12 17 16146376 16146548 173 - 2.227 1.993 -0.783
ENSG00000141027 E085 82.3327114 0.0077533281 2.240772e-07 7.615261e-06 17 16149451 16149517 67 - 2.038 1.740 -1.003
ENSG00000141027 E086 22.6573489 0.0204969165 6.028399e-03 3.986142e-02 17 16151590 16151616 27 - 1.483 1.216 -0.930
ENSG00000141027 E087 63.8490985 0.0014588823 1.880163e-08 8.308481e-07 17 16151946 16151998 53 - 1.915 1.657 -0.874
ENSG00000141027 E088 62.0551116 0.0007068268 1.890588e-06 4.964671e-05 17 16153339 16153395 57 - 1.886 1.678 -0.704
ENSG00000141027 E089 75.1414822 0.0010250316 3.602327e-13 4.024724e-11 17 16158760 16158873 114 - 2.007 1.699 -1.040
ENSG00000141027 E090 0.3337900 0.0431355389 9.690597e-01   17 16164871 16164905 35 - 0.117 0.126 0.115
ENSG00000141027 E091 0.3337900 0.0431355389 9.690597e-01   17 16164906 16164978 73 - 0.117 0.126 0.115
ENSG00000141027 E092 93.8743840 0.0004448401 2.568292e-16 4.624368e-14 17 16164979 16165161 183 - 2.099 1.800 -1.007
ENSG00000141027 E093 65.9943387 0.0005748393 5.008332e-08 1.998133e-06 17 16171803 16171862 60 - 1.923 1.693 -0.778
ENSG00000141027 E094 98.5037487 0.0019557737 8.016341e-09 3.851086e-07 17 16171863 16171995 133 - 2.094 1.867 -0.762
ENSG00000141027 E095 0.0000000       17 16171996 16172020 25 -      
ENSG00000141027 E096 97.8186340 0.0007311896 2.107696e-10 1.395459e-08 17 16186554 16186687 134 - 2.090 1.860 -0.770
ENSG00000141027 E097 80.2773524 0.0005402083 3.628159e-08 1.497314e-06 17 16194462 16194639 178 - 2.000 1.788 -0.712
ENSG00000141027 E098 1.6256636 0.0111653729 9.393519e-01 9.719268e-01 17 16197995 16198170 176 - 0.407 0.428 0.114
ENSG00000141027 E099 5.3490779 0.0054693071 3.531343e-02 1.424000e-01 17 16198171 16198600 430 - 0.910 0.639 -1.089
ENSG00000141027 E100 14.8969496 0.0159903311 1.514411e-02 7.862481e-02 17 16198601 16198719 119 - 1.311 1.067 -0.867
ENSG00000141027 E101 25.5625484 0.0090276440 2.839203e-02 1.224818e-01 17 16215362 16215548 187 - 1.504 1.337 -0.577
ENSG00000141027 E102 1.0045791 0.0156739353 9.527312e-01   17 16215654 16216091 438 - 0.286 0.303 0.113
ENSG00000141027 E103 0.0000000       17 16217865 16218185 321 -