• ENSG00000140848
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000140848

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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TableFilter v0.7.3

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000290776 ENSG00000140848 HEK293_OSMI2_6hA HEK293_TMG_6hB CPNE2 protein_coding protein_coding 15.26846 22.26644 8.695796 3.068466 0.1619972 -1.355471 13.658732 21.39799 4.083151 3.143271 0.1724996 -2.386866 0.8485625 0.9581333 0.4694333 -0.4887000 8.452059e-18 8.175536e-48 FALSE TRUE
ENST00000565874 ENSG00000140848 HEK293_OSMI2_6hA HEK293_TMG_6hB CPNE2 protein_coding protein_coding 15.26846 22.26644 8.695796 3.068466 0.1619972 -1.355471 1.114148 0.00000 4.458588 0.000000 0.1642953 8.803675 0.1183458 0.0000000 0.5127667 0.5127667 8.175536e-48 8.175536e-48 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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TableFilter v0.7.3

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_6hBColumn filter
HEK293_OSMI2_6hAColumn filter
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hBColumn filter
ENSG00000140848 E001 0.9937403 0.4302957337 0.60800068   16 57092583 57092606 24 + 0.332 0.266 -0.439
ENSG00000140848 E002 22.0693501 0.0086436094 0.00027205 0.00344856 16 57092607 57092790 184 + 0.977 1.374 1.419
ENSG00000140848 E003 0.5059767 0.0213932210 0.43847972   16 57093950 57094091 142 + 0.000 0.191 10.470
ENSG00000140848 E004 0.0000000       16 57106051 57106174 124 +      
ENSG00000140848 E005 0.0000000       16 57110551 57110707 157 +      
ENSG00000140848 E006 114.7726271 0.0032885856 0.92818730 0.96610373 16 57110708 57110922 215 + 1.987 1.993 0.018
ENSG00000140848 E007 0.0000000       16 57112842 57113287 446 +      
ENSG00000140848 E008 193.8131257 0.0010990296 0.28476127 0.52530458 16 57113288 57113467 180 + 2.244 2.211 -0.112
ENSG00000140848 E009 138.5769914 0.0026441602 0.08733382 0.25887194 16 57115476 57115550 75 + 2.131 2.061 -0.235
ENSG00000140848 E010 153.9887316 0.0003021341 0.12200585 0.31903231 16 57117496 57117567 72 + 2.158 2.108 -0.168
ENSG00000140848 E011 88.0698662 0.0004892400 0.18118988 0.40554075 16 57119195 57119198 4 + 1.922 1.864 -0.194
ENSG00000140848 E012 143.9717491 0.0003039030 0.94032810 0.97243471 16 57119199 57119278 80 + 2.090 2.092 0.007
ENSG00000140848 E013 138.4586846 0.0003418449 0.40926349 0.63548911 16 57119561 57119650 90 + 2.053 2.081 0.095
ENSG00000140848 E014 167.1707306 0.0002799240 0.23972553 0.47634597 16 57121093 57121191 99 + 2.183 2.146 -0.123
ENSG00000140848 E015 169.7972028 0.0005841528 0.13408041 0.33821061 16 57121674 57121760 87 + 2.197 2.149 -0.162
ENSG00000140848 E016 1.3934794 0.0132251038 0.42828121 0.64967129 16 57123306 57123413 108 + 0.430 0.284 -0.876
ENSG00000140848 E017 135.4337306 0.0003272232 0.67525295 0.81970522 16 57123414 57123473 60 + 2.055 2.069 0.047
ENSG00000140848 E018 1.6894177 0.0412148878 0.01108310 0.06271584 16 57123474 57124247 774 + 0.693 0.240 -2.418
ENSG00000140848 E019 0.4576437 0.2533659052 0.19376973   16 57124248 57124469 222 + 0.325 0.074 -2.584
ENSG00000140848 E020 1.5106708 0.8908321826 0.66368111 0.81220952 16 57124470 57125276 807 + 0.324 0.371 0.279
ENSG00000140848 E021 0.5061644 0.4156172623 0.74325973   16 57125277 57125363 87 + 0.195 0.138 -0.594
ENSG00000140848 E022 1.0414035 0.0188231469 0.81247559   16 57125364 57125859 496 + 0.328 0.283 -0.297
ENSG00000140848 E023 207.8275772 0.0002612550 0.69082865 0.82958895 16 57125860 57125993 134 + 2.243 2.254 0.036
ENSG00000140848 E024 149.6659632 0.0032298614 0.87021093 0.93603895 16 57127849 57127903 55 + 2.105 2.114 0.028
ENSG00000140848 E025 0.1308682 0.0308931055 1.00000000   16 57129052 57129150 99 + 0.000 0.073 8.881
ENSG00000140848 E026 143.4715581 0.0035884426 0.75152579 0.86771327 16 57134775 57134826 52 + 2.104 2.092 -0.038
ENSG00000140848 E027 208.0866255 0.0005067208 0.46251283 0.67483609 16 57137149 57137282 134 + 2.237 2.259 0.071
ENSG00000140848 E028 6.7938927 0.0525905401 0.18590004 0.41171234 16 57145640 57146084 445 + 0.644 0.874 0.928
ENSG00000140848 E029 231.8651606 0.0002521424 0.05961634 0.20189331 16 57146085 57146321 237 + 2.258 2.308 0.168
ENSG00000140848 E030 5.4233964 0.2535917392 0.40128329 0.62937191 16 57146322 57147550 1229 + 0.577 0.800 0.937
ENSG00000140848 E031 163.4708072 0.0002682309 0.02375661 0.10835017 16 57147551 57148369 819 + 2.092 2.165 0.244