• ENSG00000140057
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000140057

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000267584 ENSG00000140057 HEK293_OSMI2_6hA HEK293_TMG_6hB AK7 protein_coding protein_coding 1.538137 1.083857 1.566361 0.1799483 0.2062398 0.5271732 0.3072509 0.09395557 0.38690510 0.02858607 0.04385181 1.9328270 0.21280000 0.0912 0.25666667 0.16546667 2.536206e-01 2.629533e-05 FALSE TRUE
ENST00000554706 ENSG00000140057 HEK293_OSMI2_6hA HEK293_TMG_6hB AK7 protein_coding protein_coding 1.538137 1.083857 1.566361 0.1799483 0.2062398 0.5271732 0.1035967 0.05570868 0.08168565 0.02787710 0.08168565 0.4806121 0.06579583 0.0550 0.04146667 -0.01353333 9.184527e-01 2.629533e-05 FALSE TRUE
ENST00000555570 ENSG00000140057 HEK293_OSMI2_6hA HEK293_TMG_6hB AK7 protein_coding protein_coding 1.538137 1.083857 1.566361 0.1799483 0.2062398 0.5271732 0.8034013 0.89402377 0.50802414 0.18712702 0.09946450 -0.8033414 0.53203750 0.8160 0.31943333 -0.49656667 2.629533e-05 2.629533e-05 FALSE TRUE
ENST00000556643 ENSG00000140057 HEK293_OSMI2_6hA HEK293_TMG_6hB AK7 protein_coding retained_intron 1.538137 1.083857 1.566361 0.1799483 0.2062398 0.5271732 0.2680241 0.04016943 0.58974607 0.04016943 0.04937101 3.5794715 0.15714167 0.0378 0.38243333 0.34463333 4.613729e-03 2.629533e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_6hBColumn filter
HEK293_OSMI2_6hAColumn filter
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hBColumn filter
ENSG00000140057 E001 0.5117739 0.021768165 8.275617e-01   14 96392128 96392132 5 + 0.183 0.146 -0.390
ENSG00000140057 E002 0.8759238 0.019387492 9.912342e-01   14 96392133 96392143 11 + 0.251 0.255 0.027
ENSG00000140057 E003 7.4665800 0.004577925 2.095269e-01 4.413276e-01 14 96392144 96392259 116 + 0.845 0.991 0.549
ENSG00000140057 E004 10.8024836 0.004689787 2.254687e-01 4.598986e-01 14 96398075 96398197 123 + 1.006 1.126 0.436
ENSG00000140057 E005 5.8203027 0.006106519 3.666211e-01 6.012336e-01 14 96398198 96398263 66 + 0.775 0.891 0.449
ENSG00000140057 E006 16.4456147 0.012684229 1.399727e-07 5.024432e-06 14 96398264 96399292 1029 + 0.982 1.440 1.627
ENSG00000140057 E007 2.2445507 0.009868589 1.445692e-01 3.542481e-01 14 96404757 96404865 109 + 0.588 0.342 -1.265
ENSG00000140057 E008 1.1010935 0.017267182 1.420823e-01   14 96404866 96405052 187 + 0.409 0.146 -1.972
ENSG00000140057 E009 1.3793980 0.015073499 6.860859e-01   14 96408847 96408941 95 + 0.409 0.341 -0.391
ENSG00000140057 E010 1.6230182 0.025669143 5.413334e-01 7.300246e-01 14 96420822 96420932 111 + 0.363 0.476 0.612
ENSG00000140057 E011 0.0000000       14 96421417 96421566 150 +      
ENSG00000140057 E012 1.4270612 0.295228241 6.809775e-01 8.232760e-01 14 96437835 96437915 81 + 0.404 0.346 -0.336
ENSG00000140057 E013 1.7934240 0.163513827 8.509683e-01 9.255945e-01 14 96442730 96442818 89 + 0.449 0.420 -0.152
ENSG00000140057 E014 2.1157780 0.242723603 3.348661e-01 5.734440e-01 14 96446517 96446607 91 + 0.582 0.336 -1.269
ENSG00000140057 E015 2.6850787 0.008648402 4.913027e-02 1.775202e-01 14 96449802 96449879 78 + 0.668 0.341 -1.614
ENSG00000140057 E016 4.1210758 0.013477826 1.095657e-02 6.218412e-02 14 96451421 96451570 150 + 0.813 0.414 -1.784
ENSG00000140057 E017 2.9868460 0.009405029 3.429724e-02 1.396753e-01 14 96456347 96456475 129 + 0.692 0.342 -1.713
ENSG00000140057 E018 3.1975902 0.011936539 4.892161e-03 3.404226e-02 14 96458083 96458212 130 + 0.736 0.255 -2.479
ENSG00000140057 E019 2.7855168 0.013394579 1.627156e-01 3.807949e-01 14 96471478 96471606 129 + 0.644 0.414 -1.096
ENSG00000140057 E020 1.9814591 0.013408386 8.554059e-02 2.556043e-01 14 96472687 96472755 69 + 0.558 0.255 -1.715
ENSG00000140057 E021 2.2895032 0.237291326 8.845895e-01 9.437225e-01 14 96478465 96478662 198 + 0.535 0.469 -0.325
ENSG00000140057 E022 0.0000000       14 96482982 96482998 17 +      
ENSG00000140057 E023 2.5769854 0.021307397 4.925542e-01 6.957000e-01 14 96482999 96483219 221 + 0.589 0.475 -0.537
ENSG00000140057 E024 2.2443631 0.009237063 3.819301e-01 6.138557e-01 14 96486898 96487056 159 + 0.558 0.414 -0.712
ENSG00000140057 E025 0.6376527 0.020712885 6.825649e-01   14 96487958 96488275 318 + 0.182 0.255 0.612
ENSG00000140057 E026 2.9558008 0.103917534 3.756076e-01 6.086992e-01 14 96488305 96489427 1123 + 0.641 0.482 -0.729