ENSG00000138778

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000515478 ENSG00000138778 HEK293_OSMI2_6hA HEK293_TMG_6hB CENPE protein_coding retained_intron 9.462924 3.631562 18.07048 0.2849494 0.392476 2.311803 0.3999057 0.0000000 1.262724 0.00000000 0.3448016 6.991776 0.02923333 0.0000000 0.0695000 0.06950000 0.0003614694 0.0003614694   FALSE
MSTRG.25259.10 ENSG00000138778 HEK293_OSMI2_6hA HEK293_TMG_6hB CENPE protein_coding   9.462924 3.631562 18.07048 0.2849494 0.392476 2.311803 3.1809563 1.9481168 5.500680 0.33128445 0.3205227 1.492764 0.43401250 0.5346667 0.3044333 -0.23023333 0.1559886818 0.0003614694 FALSE TRUE
MSTRG.25259.3 ENSG00000138778 HEK293_OSMI2_6hA HEK293_TMG_6hB CENPE protein_coding   9.462924 3.631562 18.07048 0.2849494 0.392476 2.311803 0.6502442 0.3710304 2.326986 0.06538264 1.1758350 2.616671 0.09132917 0.1018667 0.1296000 0.02773333 0.9859918323 0.0003614694 FALSE TRUE
MSTRG.25259.4 ENSG00000138778 HEK293_OSMI2_6hA HEK293_TMG_6hB CENPE protein_coding   9.462924 3.631562 18.07048 0.2849494 0.392476 2.311803 2.7524162 0.5495619 4.566665 0.54956190 0.4792957 3.031927 0.19164583 0.1592667 0.2533000 0.09403333 0.4483830454 0.0003614694 FALSE TRUE
MSTRG.25259.5 ENSG00000138778 HEK293_OSMI2_6hA HEK293_TMG_6hB CENPE protein_coding   9.462924 3.631562 18.07048 0.2849494 0.392476 2.311803 1.1034888 0.5947875 3.462567 0.28798350 0.2907582 2.521503 0.13599583 0.1582333 0.1914667 0.03323333 0.8769316527 0.0003614694 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000138778 E001 0.9524741 0.1544088778 2.841575e-02   4 103105349 103105810 462 - 0.122 0.550 2.972
ENSG00000138778 E002 0.4812263 0.0217681645 8.640219e-02   4 103105811 103105850 40 - 0.066 0.356 2.952
ENSG00000138778 E003 4.7665827 0.0052468491 1.773506e-03 1.552409e-02 4 103105851 103105947 97 - 0.559 0.995 1.761
ENSG00000138778 E004 4.9689776 0.0099073049 1.691222e-01 3.894218e-01 4 103105948 103105994 47 - 0.662 0.866 0.819
ENSG00000138778 E005 11.4768610 0.0044446326 1.081397e-01 2.959407e-01 4 103105995 103106012 18 - 0.978 1.156 0.647
ENSG00000138778 E006 21.5165890 0.0019554622 1.790022e-03 1.562995e-02 4 103106013 103106019 7 - 1.206 1.461 0.891
ENSG00000138778 E007 34.9272753 0.0013316158 4.376791e-05 7.432055e-04 4 103106020 103106046 27 - 1.402 1.669 0.915
ENSG00000138778 E008 132.2268904 0.0004490118 2.456902e-20 7.586154e-18 4 103106047 103106316 270 - 1.952 2.264 1.044
ENSG00000138778 E009 152.2439714 0.0059430629 7.227106e-10 4.320059e-08 4 103108803 103109089 287 - 2.021 2.308 0.960
ENSG00000138778 E010 107.9896860 0.0005824772 2.848301e-14 3.916657e-12 4 103110828 103111011 184 - 1.872 2.160 0.965
ENSG00000138778 E011 86.3763499 0.0004470584 5.527581e-10 3.375442e-08 4 103114455 103114552 98 - 1.786 2.047 0.877
ENSG00000138778 E012 0.4632531 0.0243929181 5.986554e-01   4 103116364 103116576 213 - 0.174 0.001 -8.022
ENSG00000138778 E013 100.9809703 0.0004813834 3.780005e-08 1.553186e-06 4 103116577 103116689 113 - 1.864 2.083 0.735
ENSG00000138778 E014 136.9494455 0.0003272614 2.614620e-07 8.735444e-06 4 103120148 103120333 186 - 2.008 2.186 0.594
ENSG00000138778 E015 130.3058829 0.0003549058 7.340352e-07 2.169787e-05 4 103122871 103123089 219 - 1.986 2.162 0.588
ENSG00000138778 E016 92.6832985 0.0018058327 8.582807e-04 8.759363e-03 4 103132693 103132896 204 - 1.845 1.997 0.514
ENSG00000138778 E017 96.8346528 0.0037214118 2.373035e-04 3.080773e-03 4 103133695 103133892 198 - 1.856 2.037 0.606
ENSG00000138778 E018 93.2194850 0.0004623388 6.302052e-02 2.095005e-01 4 103136141 103136359 219 - 1.866 1.948 0.275
ENSG00000138778 E019 60.0300019 0.0007614254 2.928902e-01 5.335614e-01 4 103138351 103138449 99 - 1.687 1.745 0.197
ENSG00000138778 E020 10.2009242 0.0030769912 5.383859e-01 7.279194e-01 4 103138450 103138452 3 - 0.948 1.022 0.276
ENSG00000138778 E021 2.8363890 0.0272761813 7.760784e-01 8.823928e-01 4 103139789 103140079 291 - 0.497 0.550 0.250
ENSG00000138778 E022 77.9224957 0.0017647926 7.054825e-01 8.390150e-01 4 103140256 103140414 159 - 1.806 1.826 0.069
ENSG00000138778 E023 110.2322177 0.0060107817 8.460186e-01 9.226987e-01 4 103140814 103141104 291 - 1.960 1.951 -0.030
ENSG00000138778 E024 82.8576884 0.0006373820 2.045923e-01 4.353780e-01 4 103141750 103141908 159 - 1.823 1.884 0.204
ENSG00000138778 E025 76.5403630 0.0005415138 8.619092e-01 9.313355e-01 4 103143248 103143406 159 - 1.800 1.810 0.033
ENSG00000138778 E026 119.0236338 0.0005411187 5.978151e-01 7.688206e-01 4 103144331 103144618 288 - 1.995 1.975 -0.068
ENSG00000138778 E027 98.3008772 0.0003779780 3.449845e-01 5.825643e-01 4 103145050 103145302 253 - 1.917 1.877 -0.135
ENSG00000138778 E028 44.3571437 0.0007843624 2.153298e-02 1.010779e-01 4 103145303 103145334 32 - 1.598 1.442 -0.536
ENSG00000138778 E029 82.5979574 0.0006371908 2.531923e-02 1.131821e-01 4 103145523 103145681 159 - 1.852 1.740 -0.377
ENSG00000138778 E030 2.1286581 0.0105713951 2.092464e-01 4.409666e-01 4 103145682 103145781 100 - 0.472 0.214 -1.629
ENSG00000138778 E031 105.6155518 0.0030691866 8.563474e-01 9.284389e-01 4 103145829 103146107 279 - 1.942 1.932 -0.033
ENSG00000138778 E032 107.6179337 0.0004101597 6.903214e-03 4.419863e-02 4 103147356 103147646 291 - 1.971 1.854 -0.393
ENSG00000138778 E033 67.5694535 0.0005666092 4.655080e-03 3.276441e-02 4 103148844 103148999 156 - 1.777 1.620 -0.534
ENSG00000138778 E034 92.6874175 0.0047188665 4.686229e-04 5.389242e-03 4 103149118 103149408 291 - 1.918 1.714 -0.690
ENSG00000138778 E035 63.0814364 0.0016915939 1.432700e-01 3.523854e-01 4 103151219 103151377 159 - 1.735 1.651 -0.284
ENSG00000138778 E036 67.1912034 0.0043999637 5.994523e-01 7.698378e-01 4 103153047 103153250 204 - 1.750 1.720 -0.102
ENSG00000138778 E037 71.7009108 0.0074334388 7.877582e-04 8.180229e-03 4 103158300 103158458 159 - 1.813 1.576 -0.802
ENSG00000138778 E038 94.5926503 0.0004635767 5.765139e-07 1.759305e-05 4 103158614 103158886 273 - 1.935 1.687 -0.836
ENSG00000138778 E039 88.3665713 0.0012827948 9.325084e-06 1.974827e-04 4 103159010 103159324 315 - 1.900 1.664 -0.797
ENSG00000138778 E040 50.0626179 0.0038900506 5.138185e-03 3.534295e-02 4 103160625 103160779 155 - 1.653 1.452 -0.688
ENSG00000138778 E041 65.3313775 0.0006358383 1.697534e-03 1.499976e-02 4 103161086 103161251 166 - 1.766 1.585 -0.613
ENSG00000138778 E042 69.0721741 0.0046373453 6.647494e-03 4.293528e-02 4 103161335 103161457 123 - 1.789 1.614 -0.593
ENSG00000138778 E043 58.6904173 0.0008404541 4.174425e-03 3.013191e-02 4 103163137 103163256 120 - 1.721 1.548 -0.589
ENSG00000138778 E044 19.8573617 0.0145110192 3.800270e-03 2.802072e-02 4 103163479 103163553 75 - 1.295 0.935 -1.299
ENSG00000138778 E045 60.4155207 0.0086379673 3.708306e-03 2.752067e-02 4 103174736 103174903 168 - 1.738 1.523 -0.732
ENSG00000138778 E046 40.2133334 0.0009502178 3.008042e-02 1.275588e-01 4 103175960 103176048 89 - 1.555 1.400 -0.532
ENSG00000138778 E047 48.9089924 0.0007857375 2.136146e-04 2.826387e-03 4 103176899 103177039 141 - 1.654 1.400 -0.869
ENSG00000138778 E048 21.9027191 0.0016670605 1.631718e-03 1.454228e-02 4 103177040 103177046 7 - 1.322 0.995 -1.169
ENSG00000138778 E049 44.7136469 0.0342893574 2.403797e-03 1.970935e-02 4 103180311 103180469 159 - 1.625 1.278 -1.198
ENSG00000138778 E050 35.8628696 0.0692810740 5.968815e-02 2.020777e-01 4 103181337 103181456 120 - 1.521 1.276 -0.846
ENSG00000138778 E051 0.3088520 0.0274137502 3.240996e-01   4 103181457 103181963 507 - 0.066 0.213 1.950
ENSG00000138778 E052 40.7852497 0.0022665790 2.117267e-04 2.804685e-03 4 103182762 103182891 130 - 1.580 1.289 -1.006
ENSG00000138778 E053 27.9988210 0.0015579831 4.668328e-05 7.843188e-04 4 103183201 103183288 88 - 1.437 1.048 -1.376
ENSG00000138778 E054 19.3895443 0.0087016718 6.260718e-03 4.100165e-02 4 103185810 103185861 52 - 1.281 0.966 -1.137
ENSG00000138778 E055 17.1464280 0.0137567586 2.636412e-01 5.029253e-01 4 103194229 103194250 22 - 1.204 1.072 -0.472
ENSG00000138778 E056 26.3532202 0.0069960021 2.549560e-02 1.137326e-01 4 103194251 103194294 44 - 1.392 1.175 -0.761
ENSG00000138778 E057 38.1548081 0.0013483713 4.145141e-05 7.096173e-04 4 103194374 103194441 68 - 1.559 1.227 -1.149
ENSG00000138778 E058 38.9034144 0.0009773865 1.950434e-07 6.743252e-06 4 103194603 103194684 82 - 1.576 1.137 -1.530
ENSG00000138778 E059 38.9371192 0.0009540815 1.259319e-06 3.469521e-05 4 103195114 103195233 120 - 1.574 1.175 -1.387
ENSG00000138778 E060 42.0164292 0.0009248721 2.998249e-08 1.260950e-06 4 103195920 103196038 119 - 1.611 1.156 -1.578
ENSG00000138778 E061 33.9118110 0.0013411624 2.794962e-07 9.268674e-06 4 103196163 103196252 90 - 1.520 1.048 -1.661
ENSG00000138778 E062 25.3342850 0.0135211770 4.037192e-05 6.934440e-04 4 103196759 103196850 92 - 1.400 0.902 -1.789
ENSG00000138778 E063 13.2431083 0.0123968538 6.082137e-02 2.046645e-01 4 103198264 103198445 182 - 1.113 0.866 -0.916