ENSG00000138757

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000357854 ENSG00000138757 HEK293_OSMI2_6hA HEK293_TMG_6hB G3BP2 protein_coding protein_coding 57.76409 11.32349 101.7149 3.148487 4.630924 3.166009 25.560034 4.127568 46.728399 0.9354828 1.525937 3.497754 0.35901667 0.3854667 0.4615667 0.0761 0.67726035 0.00232402 FALSE TRUE
ENST00000359707 ENSG00000138757 HEK293_OSMI2_6hA HEK293_TMG_6hB G3BP2 protein_coding protein_coding 57.76409 11.32349 101.7149 3.148487 4.630924 3.166009 22.758487 5.731919 36.909956 1.9383560 1.033521 2.684796 0.47060000 0.4765000 0.3636000 -0.1129 0.45824736 0.00232402 FALSE TRUE
ENST00000677125 ENSG00000138757 HEK293_OSMI2_6hA HEK293_TMG_6hB G3BP2 protein_coding protein_coding 57.76409 11.32349 101.7149 3.148487 4.630924 3.166009 1.770343 0.000000 5.448121 0.0000000 2.608773 9.092261 0.01705833 0.0000000 0.0517000 0.0517 0.00232402 0.00232402 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000138757 E001 7.7027020 0.0041538592 1.508750e-02 7.841782e-02 4 75641849 75642781 933 - 0.716 1.068 1.347
ENSG00000138757 E002 2.2533531 0.0436022877 3.392169e-01 5.772980e-01 4 75642782 75642785 4 - 0.358 0.566 1.064
ENSG00000138757 E003 8.1978061 0.0981822453 2.941394e-03 2.304468e-02 4 75642786 75642794 9 - 0.671 1.245 2.169
ENSG00000138757 E004 10.9792115 0.0637659849 5.206717e-03 3.571453e-02 4 75642795 75642804 10 - 0.816 1.282 1.709
ENSG00000138757 E005 11.4476262 0.0529214002 6.617191e-04 7.112800e-03 4 75642805 75642807 3 - 0.816 1.339 1.910
ENSG00000138757 E006 21.9703409 0.0210364049 1.449826e-04 2.039375e-03 4 75642808 75642828 21 - 1.101 1.533 1.510
ENSG00000138757 E007 1285.7832263 0.0021068934 3.006711e-06 7.447618e-05 4 75642829 75644375 1547 - 2.903 3.033 0.433
ENSG00000138757 E008 105.1349675 0.0004013107 2.953074e-01 5.357905e-01 4 75644376 75644388 13 - 1.830 1.900 0.234
ENSG00000138757 E009 387.5596346 0.0001357678 4.066152e-02 1.564506e-01 4 75644389 75644742 354 - 2.393 2.463 0.234
ENSG00000138757 E010 800.5391226 0.0001040344 7.773049e-01 8.831182e-01 4 75644743 75645212 470 - 2.715 2.726 0.038
ENSG00000138757 E011 883.9435934 0.0001239873 4.119207e-01 6.375125e-01 4 75645213 75645702 490 - 2.759 2.760 0.006
ENSG00000138757 E012 412.9032663 0.0001588557 6.496929e-01 8.032908e-01 4 75646338 75646456 119 - 2.428 2.433 0.016
ENSG00000138757 E013 1.7846942 0.0112659403 5.564225e-01 7.407828e-01 4 75646457 75646662 206 - 0.312 0.444 0.758
ENSG00000138757 E014 1.1939695 0.2286878718 5.555156e-01   4 75646663 75646911 249 - 0.264 0.000 -14.271
ENSG00000138757 E015 0.6648197 0.5332001240 4.579071e-01   4 75646912 75647023 112 - 0.135 0.270 1.242
ENSG00000138757 E016 0.7930990 0.1293804485 6.126343e-01   4 75647024 75647028 5 - 0.167 0.275 0.908
ENSG00000138757 E017 453.3018662 0.0001359462 3.325100e-01 5.712652e-01 4 75647029 75647157 129 - 2.464 2.505 0.135
ENSG00000138757 E018 1.3657803 0.3095425512 9.182016e-01   4 75647158 75647181 24 - 0.263 0.281 0.127
ENSG00000138757 E019 447.5108067 0.0001683468 3.441861e-01 5.817728e-01 4 75648639 75648741 103 - 2.459 2.499 0.133
ENSG00000138757 E020 4.3884757 0.0063229796 1.646243e-01 3.835451e-01 4 75648742 75650347 1606 - 0.553 0.802 1.056
ENSG00000138757 E021 13.9568297 0.0022817594 2.845464e-01 5.250622e-01 4 75653983 75654081 99 - 0.984 1.129 0.528
ENSG00000138757 E022 2.4537725 0.0109565590 4.601020e-01 6.732116e-01 4 75654082 75654592 511 - 0.439 0.276 -0.976
ENSG00000138757 E023 1.5713612 0.0114034625 4.727025e-01 6.819732e-01 4 75654593 75654745 153 - 0.287 0.444 0.930
ENSG00000138757 E024 1.6785765 0.0121989077 4.711713e-01 6.809934e-01 4 75654746 75654913 168 - 0.287 0.445 0.931
ENSG00000138757 E025 1.9964185 0.0189567808 6.376222e-01 7.954727e-01 4 75654914 75655065 152 - 0.336 0.445 0.612
ENSG00000138757 E026 500.3068768 0.0003237148 4.719475e-02 1.730043e-01 4 75655066 75655196 131 - 2.515 2.481 -0.114
ENSG00000138757 E027 300.1605068 0.0003944082 1.726012e-02 8.639880e-02 4 75655197 75655246 50 - 2.297 2.235 -0.208
ENSG00000138757 E028 336.8965813 0.0001656304 1.037843e-03 1.019550e-02 4 75655768 75655842 75 - 2.351 2.266 -0.283
ENSG00000138757 E029 259.4906322 0.0002007512 1.504818e-04 2.104181e-03 4 75655843 75655864 22 - 2.240 2.120 -0.401
ENSG00000138757 E030 216.2948670 0.0002481879 1.253707e-03 1.181793e-02 4 75655865 75655870 6 - 2.161 2.050 -0.369
ENSG00000138757 E031 0.9618555 0.1134046255 6.098165e-01   4 75656855 75656918 64 - 0.231 0.000 -14.225
ENSG00000138757 E032 0.6246688 0.0191681269 1.000000e+00   4 75656919 75656923 5 - 0.166 0.000 -14.259
ENSG00000138757 E033 222.6496101 0.0002189475 2.732043e-03 2.175476e-02 4 75656924 75656940 17 - 2.172 2.074 -0.330
ENSG00000138757 E034 200.1146901 0.0002603648 1.425545e-03 1.307960e-02 4 75656941 75656962 22 - 2.128 2.015 -0.382
ENSG00000138757 E035 147.2994112 0.0003173041 1.387279e-03 1.280669e-02 4 75656963 75656972 10 - 1.997 1.859 -0.464
ENSG00000138757 E036 205.1695445 0.0002204313 6.585973e-02 2.158669e-01 4 75656973 75657014 42 - 2.132 2.077 -0.185
ENSG00000138757 E037 140.9443481 0.0003357861 4.033872e-01 6.310340e-01 4 75657557 75657560 4 - 1.968 1.946 -0.075
ENSG00000138757 E038 208.2675786 0.0002310357 2.061551e-01 4.372082e-01 4 75657561 75657600 40 - 2.137 2.105 -0.106
ENSG00000138757 E039 269.9208297 0.0001873253 6.395324e-01 7.966326e-01 4 75657601 75657695 95 - 2.246 2.247 0.003
ENSG00000138757 E040 198.8999581 0.0002312075 1.423842e-01 3.509959e-01 4 75657696 75657730 35 - 2.118 2.077 -0.138
ENSG00000138757 E041 4.1059898 0.1661842952 6.380414e-01 7.957443e-01 4 75657801 75657893 93 - 0.574 0.451 -0.595
ENSG00000138757 E042 227.3277962 0.0003169834 4.396475e-02 1.649922e-01 4 75658843 75658924 82 - 2.179 2.120 -0.198
ENSG00000138757 E043 0.4820342 0.0213444800 1.000000e+00   4 75661515 75661930 416 - 0.131 0.000 -13.811
ENSG00000138757 E044 241.5729867 0.0006630173 1.173811e-01 3.114641e-01 4 75661931 75662049 119 - 2.204 2.162 -0.140
ENSG00000138757 E045 0.6600180 0.0193874923 1.000000e+00   4 75662050 75662073 24 - 0.167 0.000 -14.257
ENSG00000138757 E046 0.0000000       4 75662120 75662212 93 -      
ENSG00000138757 E047 2.6697803 0.0673195221 1.670242e-02 8.437058e-02 4 75662213 75662381 169 - 0.335 0.808 2.222
ENSG00000138757 E048 2.5256882 0.0101176236 1.627377e-01 3.808202e-01 4 75662382 75662520 139 - 0.381 0.659 1.343
ENSG00000138757 E049 0.9465047 0.0153671484 2.444972e-02   4 75662521 75662525 5 - 0.131 0.565 2.929
ENSG00000138757 E050 0.1308682 0.0326491905 4.293463e-02   4 75662690 75662765 76 - 0.000 0.276 14.561
ENSG00000138757 E051 0.1614157 0.0360313581 7.513426e-01   4 75662766 75662841 76 - 0.048 0.000 -12.045
ENSG00000138757 E052 0.0000000       4 75670362 75670427 66 -      
ENSG00000138757 E053 0.3032425 0.0252516424 5.457896e-03   4 75672506 75672589 84 - 0.000 0.444 15.652
ENSG00000138757 E054 0.3032425 0.0252516424 5.457896e-03   4 75672590 75672612 23 - 0.000 0.444 15.652
ENSG00000138757 E055 0.1723744 0.1654788547 4.682763e-02   4 75672613 75672711 99 - 0.000 0.278 14.059
ENSG00000138757 E056 0.1426347 0.0338042370 7.503361e-01   4 75672813 75672943 131 - 0.048 0.000 -12.066
ENSG00000138757 E057 0.0000000       4 75672944 75673018 75 -      
ENSG00000138757 E058 3.3448594 0.0072345159 2.636849e-01 5.029682e-01 4 75673019 75673049 31 - 0.523 0.277 -1.390
ENSG00000138757 E059 2.5941241 0.0084693791 4.586569e-01 6.722631e-01 4 75673050 75673205 156 - 0.440 0.277 -0.976
ENSG00000138757 E060 130.0479439 0.0009437325 7.110088e-01 8.424781e-01 4 75673208 75673298 91 - 1.933 1.932 -0.005
ENSG00000138757 E061 102.0115653 0.0025012242 9.571528e-01 9.804373e-01 4 75673299 75673363 65 - 1.828 1.841 0.046
ENSG00000138757 E062 47.9158221 0.0052420668 7.818534e-01 8.857162e-01 4 75673364 75673450 87 - 1.503 1.542 0.132
ENSG00000138757 E063 0.1614157 0.0360313581 7.513426e-01   4 75673451 75673620 170 - 0.048 0.000 -12.045
ENSG00000138757 E064 0.0000000       4 75675090 75675119 30 -      
ENSG00000138757 E065 0.0000000       4 75679203 75679241 39 -      
ENSG00000138757 E066 0.0000000       4 75683530 75683559 30 -      
ENSG00000138757 E067 0.0000000       4 75686498 75686527 30 -      
ENSG00000138757 E068 0.0000000       4 75686723 75686752 30 -      
ENSG00000138757 E069 0.3559677 0.5428004312 1.000000e+00   4 75694793 75694797 5 - 0.094 0.000 -12.255
ENSG00000138757 E070 6.3689777 0.0046275659 1.310061e-01 3.333810e-01 4 75694798 75694929 132 - 0.736 0.444 -1.319
ENSG00000138757 E071 0.6765862 0.2451784439 1.000000e+00   4 75694930 75695073 144 - 0.169 0.000 -13.437
ENSG00000138757 E072 0.0000000       4 75713126 75713336 211 -      
ENSG00000138757 E073 0.1723744 0.1654788547 4.682763e-02   4 75718842 75718872 31 - 0.000 0.278 14.059
ENSG00000138757 E074 0.1614157 0.0360313581 7.513426e-01   4 75719588 75719623 36 - 0.048 0.000 -12.045
ENSG00000138757 E075 0.5893196 0.0954976673 1.000000e+00   4 75720877 75720969 93 - 0.165 0.000 -13.686
ENSG00000138757 E076 1.6919202 0.0510875452 5.629207e-04 6.246121e-03 4 75721888 75722196 309 - 0.166 0.806 3.534
ENSG00000138757 E077 1.6919202 0.0510875452 5.629207e-04 6.246121e-03 4 75722197 75722244 48 - 0.166 0.806 3.534
ENSG00000138757 E078 0.9830216 0.0176360391 2.416526e-02   4 75722245 75722247 3 - 0.130 0.565 2.934
ENSG00000138757 E079 2.3019895 0.0946518504 3.010856e-04 3.740946e-03 4 75722248 75723465 1218 - 0.230 0.913 3.362
ENSG00000138757 E080 0.8209858 0.0466848572 6.070933e-04   4 75723466 75723481 16 - 0.048 0.660 4.937
ENSG00000138757 E081 0.9933601 0.2500323571 5.661739e-04   4 75723482 75723495 14 - 0.048 0.742 5.286
ENSG00000138757 E082 0.3447487 1.0546612663 7.166539e-02   4 75723496 75723511 16 - 0.000 0.453 14.705
ENSG00000138757 E083 1.0343188 0.2119333337 5.062072e-03   4 75723512 75723704 193 - 0.092 0.663 3.924
ENSG00000138757 E084 0.8619444 0.0502115137 1.270179e-02   4 75723705 75723734 30 - 0.092 0.565 3.512
ENSG00000138757 E085 1.4145595 0.0377064730 2.109481e-02 9.966016e-02 4 75723735 75724055 321 - 0.200 0.658 2.599
ENSG00000138757 E086 9.8670007 0.0039935033 3.600071e-03 2.693163e-02 4 75724056 75724176 121 - 0.804 1.183 1.408
ENSG00000138757 E087 30.2124665 0.0130040677 3.953971e-01 6.246514e-01 4 75724276 75724589 314 - 1.303 1.398 0.330