ENSG00000138002

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000260570 ENSG00000138002 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT172 protein_coding protein_coding 15.06631 17.50538 11.75378 0.7199209 0.2266616 -0.5742707 5.765286 6.869259 6.4777726 1.4311864 0.11163100 -0.08452999 0.40971667 0.3915333 0.55186667 0.160333333 5.239712e-01 5.787687e-14 FALSE TRUE
ENST00000420854 ENSG00000138002 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT172 protein_coding nonsense_mediated_decay 15.06631 17.50538 11.75378 0.7199209 0.2266616 -0.5742707 1.190077 1.592586 0.2315781 0.9166548 0.11597662 -2.72983978 0.06585000 0.0910000 0.01940000 -0.071600000 8.791230e-01 5.787687e-14 TRUE TRUE
ENST00000509128 ENSG00000138002 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT172 protein_coding nonsense_mediated_decay 15.06631 17.50538 11.75378 0.7199209 0.2266616 -0.5742707 2.296952 2.963166 0.0000000 0.4496435 0.00000000 -8.21585601 0.12805417 0.1695333 0.00000000 -0.169533333 5.787687e-14 5.787687e-14 TRUE TRUE
ENST00000675690 ENSG00000138002 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT172 protein_coding protein_coding 15.06631 17.50538 11.75378 0.7199209 0.2266616 -0.5742707 1.275237 1.523994 0.2769528 0.2960192 0.14730135 -2.41840783 0.08785000 0.0861000 0.02310000 -0.063000000 3.784021e-01 5.787687e-14 FALSE TRUE
MSTRG.18129.4 ENSG00000138002 HEK293_OSMI2_6hA HEK293_TMG_6hB IFT172 protein_coding   15.06631 17.50538 11.75378 0.7199209 0.2266616 -0.5742707 1.407467 1.496808 0.9761759 0.2632564 0.09057822 -0.61157909 0.09541667 0.0850000 0.08336667 -0.001633333 1.000000e+00 5.787687e-14 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000138002 E001 1.2093385 0.0345906039 6.155805e-01   2 27444377 27444397 21 - 0.259 0.359 0.658
ENSG00000138002 E002 4.8538000 0.0769367422 6.260485e-01 7.879859e-01 2 27444398 27444405 8 - 0.667 0.781 0.468
ENSG00000138002 E003 10.2586172 0.0128473582 2.691421e-01 5.089044e-01 2 27444406 27444415 10 - 0.940 1.082 0.523
ENSG00000138002 E004 23.0952943 0.0082121711 1.281093e-01 3.287979e-01 2 27444416 27444460 45 - 1.267 1.411 0.502
ENSG00000138002 E005 43.6725113 0.0009263014 1.345401e-01 3.389207e-01 2 27444461 27444521 61 - 1.570 1.666 0.327
ENSG00000138002 E006 36.3593617 0.0029819928 2.031819e-01 4.335622e-01 2 27445014 27445019 6 - 1.493 1.588 0.326
ENSG00000138002 E007 40.9219384 0.0011164951 1.273723e-01 3.276988e-01 2 27445020 27445042 23 - 1.541 1.642 0.344
ENSG00000138002 E008 70.0088416 0.0028825647 5.577046e-02 1.931145e-01 2 27445043 27445105 63 - 1.763 1.872 0.370
ENSG00000138002 E009 0.9576510 0.0163358673 5.576595e-01   2 27445291 27445295 5 - 0.346 0.248 -0.666
ENSG00000138002 E010 52.8531694 0.0085256437 1.278552e-01 3.284535e-01 2 27445296 27445306 11 - 1.636 1.753 0.394
ENSG00000138002 E011 120.2586245 0.0040317360 5.416124e-04 6.050803e-03 2 27445307 27445443 137 - 1.953 2.124 0.574
ENSG00000138002 E012 67.8527245 0.0006675699 1.362300e-03 1.262965e-02 2 27445444 27445449 6 - 1.714 1.874 0.540
ENSG00000138002 E013 3.6692179 0.1899024004 4.042675e-01 6.317593e-01 2 27445553 27445629 77 - 0.482 0.736 1.129
ENSG00000138002 E014 103.5264777 0.0024827997 1.332318e-05 2.691628e-04 2 27445745 27445843 99 - 1.865 2.069 0.684
ENSG00000138002 E015 61.9112495 0.0010081630 1.688034e-03 1.493835e-02 2 27445929 27445940 12 - 1.671 1.837 0.561
ENSG00000138002 E016 77.8640303 0.0028873605 2.639802e-05 4.830809e-04 2 27445941 27445988 48 - 1.734 1.955 0.746
ENSG00000138002 E017 1.7541761 0.2216078857 3.354369e-01 5.739590e-01 2 27445989 27446259 271 - 0.261 0.493 1.356
ENSG00000138002 E018 98.8729575 0.1300823234 5.925616e-02 2.011204e-01 2 27446260 27446355 96 - 1.778 2.079 1.014
ENSG00000138002 E019 111.4956971 0.0389123571 1.427491e-02 7.542416e-02 2 27447515 27447634 120 - 1.869 2.118 0.836
ENSG00000138002 E020 0.9512337 0.2211865175 7.066631e-02   2 27447635 27447657 23 - 0.000 0.403 13.559
ENSG00000138002 E021 107.9807604 0.0119945580 9.960767e-03 5.799809e-02 2 27447812 27447922 111 - 1.909 2.083 0.583
ENSG00000138002 E022 84.5503233 0.0011262892 7.082463e-06 1.553358e-04 2 27448915 27449031 117 - 1.783 1.991 0.699
ENSG00000138002 E023 77.2755978 0.0007856916 1.468788e-06 3.972511e-05 2 27449294 27449380 87 - 1.731 1.957 0.762
ENSG00000138002 E024 2.5700003 0.1279226363 8.752394e-01 9.388491e-01 2 27449381 27449498 118 - 0.539 0.526 -0.062
ENSG00000138002 E025 75.1354281 0.0041925573 1.269000e-02 6.920535e-02 2 27449499 27449562 64 - 1.777 1.920 0.482
ENSG00000138002 E026 105.7218396 0.0037256568 3.509095e-01 5.880927e-01 2 27449691 27449800 110 - 1.982 2.038 0.188
ENSG00000138002 E027 83.8708307 0.0092725822 2.991677e-01 5.395949e-01 2 27449998 27450096 99 - 1.866 1.946 0.268
ENSG00000138002 E028 0.6120945 0.0217681645 5.923470e-01   2 27450097 27450659 563 - 0.148 0.247 0.915
ENSG00000138002 E029 0.3751086 0.0249794305 3.649876e-01   2 27453137 27453137 1 - 0.000 0.180 11.986
ENSG00000138002 E030 0.6486114 0.0189915642 5.869821e-01   2 27453138 27453270 133 - 0.148 0.248 0.921
ENSG00000138002 E031 86.5841818 0.0087341829 1.425097e-01 3.511981e-01 2 27453384 27453513 130 - 1.862 1.966 0.350
ENSG00000138002 E032 70.3989419 0.0091041535 6.389640e-02 2.114684e-01 2 27453630 27453739 110 - 1.760 1.888 0.432
ENSG00000138002 E033 8.6793711 0.1191686755 5.654366e-01 7.470196e-01 2 27453740 27453981 242 - 1.012 0.948 -0.237
ENSG00000138002 E034 105.9173447 0.0056427068 6.257287e-02 2.085513e-01 2 27453982 27454162 181 - 1.951 2.055 0.351
ENSG00000138002 E035 18.1281833 0.1605394915 4.930150e-01 6.959812e-01 2 27454163 27454353 191 - 1.301 1.250 -0.181
ENSG00000138002 E036 69.2767145 0.0073428904 3.676146e-01 6.021066e-01 2 27454354 27454418 65 - 1.789 1.854 0.222
ENSG00000138002 E037 79.3026650 0.0034812913 1.219484e-01 3.189827e-01 2 27454567 27454660 94 - 1.832 1.920 0.296
ENSG00000138002 E038 110.9023463 0.0004185495 4.156140e-01 6.402839e-01 2 27456511 27456653 143 - 2.008 2.048 0.136
ENSG00000138002 E039 115.1406900 0.0007093594 2.255810e-01 4.600380e-01 2 27457639 27457755 117 - 2.068 2.037 -0.103
ENSG00000138002 E040 88.8383488 0.0005756859 9.010766e-02 2.639965e-01 2 27457841 27457892 52 - 1.973 1.920 -0.179
ENSG00000138002 E041 89.5875751 0.0027488634 5.349081e-01 7.255798e-01 2 27457893 27457976 84 - 1.953 1.938 -0.048
ENSG00000138002 E042 13.8222273 0.1997737464 5.383719e-02 1.887058e-01 2 27457977 27458125 149 - 1.337 0.996 -1.216
ENSG00000138002 E043 88.0849208 0.0005845507 7.029718e-02 2.253446e-01 2 27458126 27458223 98 - 1.972 1.913 -0.196
ENSG00000138002 E044 72.2762897 0.0005946735 5.924312e-02 2.010921e-01 2 27458779 27458868 90 - 1.893 1.825 -0.230
ENSG00000138002 E045 3.3138858 0.4897379269 5.232112e-01 7.172467e-01 2 27458869 27459377 509 - 0.630 0.619 -0.047
ENSG00000138002 E046 68.7416808 0.0008115692 8.854242e-01 9.441800e-01 2 27459378 27459522 145 - 1.830 1.836 0.020
ENSG00000138002 E047 66.4483850 0.0006356312 5.914264e-01 7.646695e-01 2 27459709 27459829 121 - 1.825 1.813 -0.040
ENSG00000138002 E048 65.5029348 0.0005933773 3.153494e-01 5.553981e-01 2 27461015 27461093 79 - 1.830 1.797 -0.111
ENSG00000138002 E049 109.5581257 0.0004409530 9.002033e-01 9.519699e-01 2 27461269 27461517 249 - 2.028 2.036 0.026
ENSG00000138002 E050 71.9853447 0.0005405741 3.742019e-01 6.074820e-01 2 27461759 27461836 78 - 1.863 1.837 -0.089
ENSG00000138002 E051 82.9099428 0.0006350991 1.405560e-01 3.483806e-01 2 27462701 27462793 93 - 1.936 1.889 -0.160
ENSG00000138002 E052 76.3866697 0.0061602428 1.307764e-01 3.330059e-01 2 27463097 27463181 85 - 1.914 1.845 -0.231
ENSG00000138002 E053 4.7190793 0.3668601721 5.111082e-01 7.088439e-01 2 27463559 27463659 101 - 0.804 0.707 -0.391
ENSG00000138002 E054 20.9675199 0.4082134732 9.839585e-02 2.789504e-01 2 27463660 27464870 1211 - 1.494 1.184 -1.081
ENSG00000138002 E055 1.9205363 0.0156205260 7.966002e-01 8.943372e-01 2 27464871 27464957 87 - 0.482 0.446 -0.183
ENSG00000138002 E056 3.4612071 0.0257401367 6.753010e-01 8.197469e-01 2 27464958 27465110 153 - 0.669 0.610 -0.254
ENSG00000138002 E057 2.7019838 0.1741003199 7.782548e-01 8.836545e-01 2 27465111 27465201 91 - 0.587 0.547 -0.183
ENSG00000138002 E058 7.7919902 0.1977823106 4.796220e-01 6.868649e-01 2 27465202 27465410 209 - 1.000 0.886 -0.427
ENSG00000138002 E059 80.1014239 0.0032170018 1.454349e-01 3.555589e-01 2 27465411 27465518 108 - 1.927 1.870 -0.190
ENSG00000138002 E060 78.9004529 0.0031149511 8.473190e-02 2.542031e-01 2 27465746 27465882 137 - 1.927 1.857 -0.235
ENSG00000138002 E061 2.0522570 0.2265707959 8.235223e-01 9.099801e-01 2 27465883 27466081 199 - 0.488 0.452 -0.181
ENSG00000138002 E062 2.1449430 0.4578569338 8.796107e-01 9.410921e-01 2 27466752 27466844 93 - 0.425 0.521 0.479
ENSG00000138002 E063 0.6839606 0.0187924222 5.881793e-01   2 27470781 27470812 32 - 0.148 0.248 0.919
ENSG00000138002 E064 2.4168395 0.0102848446 7.191808e-01 8.476720e-01 2 27470813 27470927 115 - 0.537 0.485 -0.249
ENSG00000138002 E065 68.4507469 0.0007351380 6.879463e-02 2.223570e-01 2 27470928 27471029 102 - 1.868 1.799 -0.231
ENSG00000138002 E066 48.1931029 0.0048823293 8.435421e-02 2.534551e-01 2 27471030 27471095 66 - 1.734 1.643 -0.309
ENSG00000138002 E067 4.0787074 0.0068387952 8.388282e-01 9.187628e-01 2 27471096 27471232 137 - 0.668 0.708 0.165
ENSG00000138002 E068 12.4155995 0.0329712565 7.490401e-02 2.346163e-01 2 27471233 27471686 454 - 1.236 1.029 -0.743
ENSG00000138002 E069 7.7047945 0.1042028667 7.880162e-01 8.893975e-01 2 27471687 27472011 325 - 0.955 0.923 -0.120
ENSG00000138002 E070 2.1489437 0.1272010208 9.935857e-01 9.984251e-01 2 27472012 27472065 54 - 0.479 0.490 0.057
ENSG00000138002 E071 5.5901972 0.4872033557 3.520310e-01 5.890590e-01 2 27472066 27472249 184 - 0.855 0.771 -0.330
ENSG00000138002 E072 63.3966767 0.0034781011 9.133691e-02 2.661469e-01 2 27472250 27472362 113 - 1.843 1.766 -0.260
ENSG00000138002 E073 0.1723744 0.0328506232 7.517376e-01   2 27474772 27475493 722 - 0.000 0.099 10.983
ENSG00000138002 E074 0.1723744 0.0328506232 7.517376e-01   2 27475494 27475825 332 - 0.000 0.099 10.983
ENSG00000138002 E075 0.3206185 0.0274424043 9.925286e-02   2 27475826 27476640 815 - 0.258 0.000 -13.348
ENSG00000138002 E076 51.1336312 0.0015034539 2.798407e-01 5.199324e-01 2 27476641 27476726 86 - 1.734 1.691 -0.147
ENSG00000138002 E077 0.3503582 0.0286184750 7.223471e-01   2 27476727 27477216 490 - 0.148 0.099 -0.666
ENSG00000138002 E078 63.4306279 0.0102739096 7.325543e-02 2.313274e-01 2 27477217 27477320 104 - 1.857 1.757 -0.338
ENSG00000138002 E079 0.4812263 0.0226451187 8.809077e-01   2 27477321 27477558 238 - 0.148 0.179 0.332
ENSG00000138002 E080 54.5581852 0.0109623050 5.422897e-03 3.681669e-02 2 27477559 27477612 54 - 1.834 1.661 -0.588
ENSG00000138002 E081 85.1061952 0.0009175627 3.494316e-02 1.414341e-01 2 27477995 27478156 162 - 1.968 1.895 -0.244
ENSG00000138002 E082 65.9330937 0.0009318661 9.464347e-05 1.427664e-03 2 27479509 27479604 96 - 1.906 1.743 -0.551
ENSG00000138002 E083 72.5443803 0.0014018408 6.416917e-04 6.933512e-03 2 27480026 27480149 124 - 1.936 1.796 -0.471
ENSG00000138002 E084 65.2855340 0.0006875311 4.279878e-02 1.620275e-01 2 27481046 27481126 81 - 1.858 1.779 -0.265
ENSG00000138002 E085 69.6245138 0.0158453610 3.323187e-01 5.711213e-01 2 27481127 27481260 134 - 1.872 1.813 -0.198
ENSG00000138002 E086 0.1426347 0.0311768251 3.056502e-01   2 27483037 27483288 252 - 0.148 0.000 -12.347
ENSG00000138002 E087 59.7053207 0.0103078734 1.057466e-01 2.918988e-01 2 27483289 27483376 88 - 1.826 1.728 -0.330
ENSG00000138002 E088 0.1779838 0.0333088870 3.051426e-01   2 27483377 27483579 203 - 0.148 0.000 -12.350
ENSG00000138002 E089 61.4879684 0.0007230522 1.530082e-02 7.921078e-02 2 27483580 27483659 80 - 1.841 1.741 -0.337
ENSG00000138002 E090 0.1426347 0.0311768251 3.056502e-01   2 27483660 27483871 212 - 0.148 0.000 -12.347
ENSG00000138002 E091 39.2854738 0.0008668209 2.176562e-02 1.018181e-01 2 27483872 27483882 11 - 1.660 1.542 -0.403
ENSG00000138002 E092 47.0003313 0.0008027511 1.081636e-03 1.054277e-02 2 27483883 27483937 55 - 1.757 1.599 -0.536
ENSG00000138002 E093 1.4458422 0.1577381410 1.490735e-01 3.609233e-01 2 27483938 27484027 90 - 0.534 0.250 -1.639
ENSG00000138002 E094 1.9879760 0.0143860219 5.190966e-02 1.842126e-01 2 27484028 27484106 79 - 0.628 0.307 -1.662
ENSG00000138002 E095 2.4804213 0.0094901435 6.652438e-03 4.295273e-02 2 27484107 27484226 120 - 0.738 0.306 -2.126
ENSG00000138002 E096 38.9879696 0.0035804978 2.379877e-05 4.430098e-04 2 27484227 27484266 40 - 1.722 1.473 -0.849
ENSG00000138002 E097 0.3032425 0.0266696297 3.675038e-01   2 27484267 27484480 214 - 0.000 0.179 11.981
ENSG00000138002 E098 1.0938684 0.1866489374 2.498176e-01   2 27484481 27485017 537 - 0.147 0.403 1.922
ENSG00000138002 E099 65.4181688 0.0008310611 1.620200e-05 3.191964e-04 2 27485018 27485130 113 - 1.911 1.730 -0.610
ENSG00000138002 E100 0.5117739 0.0228494253 3.229249e-01   2 27485131 27485359 229 - 0.259 0.099 -1.666
ENSG00000138002 E101 69.3429457 0.0005934304 5.498295e-09 2.735023e-07 2 27485360 27485503 144 - 1.966 1.728 -0.800
ENSG00000138002 E102 0.0000000       2 27486159 27486242 84 -      
ENSG00000138002 E103 0.1723744 0.0328506232 7.517376e-01   2 27486569 27486735 167 - 0.000 0.099 10.983
ENSG00000138002 E104 40.1641763 0.0032153881 5.694787e-05 9.325097e-04 2 27489615 27489662 48 - 1.725 1.492 -0.794
ENSG00000138002 E105 32.6141010 0.0019483419 2.399712e-06 6.119014e-05 2 27489663 27489805 143 - 1.664 1.377 -0.983