ENSG00000137073

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000379238 ENSG00000137073 HEK293_OSMI2_6hA HEK293_TMG_6hB UBAP2 protein_coding protein_coding 32.13371 42.92958 25.4556 2.555802 1.707998 -0.7537582 17.418526 24.753400 13.3044210 2.7778686 0.25025572 -0.8952197 0.53733333 0.57430000 0.52810000 -0.04620000 8.824899e-01 3.977951e-12 FALSE TRUE
ENST00000474372 ENSG00000137073 HEK293_OSMI2_6hA HEK293_TMG_6hB UBAP2 protein_coding processed_transcript 32.13371 42.92958 25.4556 2.555802 1.707998 -0.7537582 2.133586 3.183380 2.3716178 0.3504715 0.18992727 -0.4231421 0.06720833 0.07373333 0.09380000 0.02006667 6.943365e-01 3.977951e-12 FALSE FALSE
ENST00000682949 ENSG00000137073 HEK293_OSMI2_6hA HEK293_TMG_6hB UBAP2 protein_coding retained_intron 32.13371 42.92958 25.4556 2.555802 1.707998 -0.7537582 2.767245 2.802012 0.8718675 0.6829183 0.06895711 -1.6729689 0.08097917 0.06596667 0.03466667 -0.03130000 5.540051e-01 3.977951e-12 TRUE TRUE
MSTRG.32567.26 ENSG00000137073 HEK293_OSMI2_6hA HEK293_TMG_6hB UBAP2 protein_coding   32.13371 42.92958 25.4556 2.555802 1.707998 -0.7537582 0.592375 0.000000 1.2944051 0.0000000 0.23002404 7.0272482 0.02190833 0.00000000 0.05210000 0.05210000 3.977951e-12 3.977951e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000137073 E001 10.8144201 0.0168908470 7.407093e-01 8.608642e-01 9 33921693 33921699 7 - 0.965 1.090 0.457
ENSG00000137073 E002 22.8239328 0.0690853732 5.207530e-02 1.845759e-01 9 33921700 33921707 8 - 1.072 1.438 1.290
ENSG00000137073 E003 34.7046671 0.1433848314 7.350135e-02 2.317868e-01 9 33921708 33921723 16 - 1.240 1.617 1.301
ENSG00000137073 E004 38.9431591 0.1552508402 5.527500e-02 1.919637e-01 9 33921724 33921728 5 - 1.261 1.671 1.411
ENSG00000137073 E005 121.0138777 0.6133814924 2.486806e-01 4.864449e-01 9 33921729 33921858 130 - 1.809 2.141 1.117
ENSG00000137073 E006 68.1479353 0.3900687612 1.649868e-01 3.839458e-01 9 33921859 33921879 21 - 1.533 1.901 1.248
ENSG00000137073 E007 56.7962239 0.3155743104 1.365639e-01 3.422167e-01 9 33921880 33921880 1 - 1.446 1.826 1.292
ENSG00000137073 E008 67.0159254 0.4130809031 2.144780e-01 4.469011e-01 9 33921881 33921891 11 - 1.559 1.887 1.113
ENSG00000137073 E009 349.1297012 1.2276596445 3.531017e-01 5.901000e-01 9 33921892 33922140 249 - 2.243 2.604 1.205
ENSG00000137073 E010 238.1826668 1.0645674169 3.095415e-01 5.500273e-01 9 33922141 33922237 97 - 2.061 2.442 1.272
ENSG00000137073 E011 148.4463030 0.9031616463 3.147015e-01 5.548484e-01 9 33922238 33922261 24 - 1.888 2.231 1.149
ENSG00000137073 E012 127.6143564 0.5731597352 1.769648e-01 3.996948e-01 9 33922262 33922291 30 - 1.773 2.176 1.354
ENSG00000137073 E013 128.7935539 0.5772838056 1.783974e-01 4.017731e-01 9 33922292 33922348 57 - 1.777 2.181 1.356
ENSG00000137073 E014 86.0933095 0.4730712545 1.884482e-01 4.149962e-01 9 33922349 33922376 28 - 1.649 1.998 1.178
ENSG00000137073 E015 312.2484888 1.1818451028 3.417170e-01 5.794741e-01 9 33922377 33922599 223 - 2.194 2.556 1.206
ENSG00000137073 E016 6.0735556 0.1173421084 2.587981e-01 4.976502e-01 9 33922600 33922686 87 - 0.618 0.910 1.178
ENSG00000137073 E017 318.7264317 1.2120677498 3.751636e-01 6.083270e-01 9 33922687 33922878 192 - 2.227 2.559 1.108
ENSG00000137073 E018 4.0389978 0.4652196214 5.625215e-01 7.450668e-01 9 33922879 33922965 87 - 0.763 0.636 -0.525
ENSG00000137073 E019 173.4841590 0.9923353140 3.599923e-01 5.957297e-01 9 33922966 33923033 68 - 1.982 2.293 1.040
ENSG00000137073 E020 21.3523127 0.3242112567 8.724970e-01 9.372987e-01 9 33923034 33923161 128 - 1.313 1.330 0.059
ENSG00000137073 E021 7.7610725 0.1113326488 5.178977e-01 7.135343e-01 9 33923162 33923185 24 - 0.977 0.894 -0.311
ENSG00000137073 E022 169.6416668 1.0098446178 3.980086e-01 6.267655e-01 9 33923186 33923245 60 - 2.000 2.276 0.922
ENSG00000137073 E023 199.9990921 1.0887775866 4.288088e-01 6.501986e-01 9 33923246 33923293 48 - 2.087 2.343 0.857
ENSG00000137073 E024 16.3990288 0.4737412884 7.372274e-01 8.587289e-01 9 33923294 33923378 85 - 1.261 1.191 -0.247
ENSG00000137073 E025 293.6755634 1.2574019950 4.865626e-01 6.916357e-01 9 33923379 33923478 100 - 2.279 2.502 0.745
ENSG00000137073 E026 201.4024104 0.3262966878 3.965445e-01 6.256085e-01 9 33923795 33923824 30 - 2.161 2.325 0.548
ENSG00000137073 E027 328.8781706 0.0032231136 2.803048e-01 5.204416e-01 9 33923825 33924000 176 - 2.401 2.531 0.432
ENSG00000137073 E028 175.3717082 0.0154771621 8.655658e-01 9.334665e-01 9 33924206 33924284 79 - 2.154 2.247 0.311
ENSG00000137073 E029 145.2521775 0.0138774268 7.545056e-01 8.694226e-01 9 33926617 33926664 48 - 2.080 2.163 0.279
ENSG00000137073 E030 148.9637251 0.0170465508 9.375820e-01 9.710081e-01 9 33926989 33927026 38 - 2.081 2.178 0.328
ENSG00000137073 E031 144.4187101 0.0138122131 5.076620e-01 7.061463e-01 9 33927027 33927080 54 - 2.091 2.156 0.217
ENSG00000137073 E032 4.4537097 0.1533009602 3.382297e-01 5.764440e-01 9 33927081 33927796 716 - 0.780 0.673 -0.437
ENSG00000137073 E033 278.3121224 0.0245414564 4.784805e-01 6.860570e-01 9 33927797 33927992 196 - 2.380 2.436 0.186
ENSG00000137073 E034 7.0971058 0.0196648081 9.489572e-01 9.766485e-01 9 33927993 33928022 30 - 0.815 0.915 0.388
ENSG00000137073 E035 3.6221022 0.1549449230 5.091657e-01 7.073051e-01 9 33928023 33928371 349 - 0.452 0.711 1.176
ENSG00000137073 E036 12.5772141 0.0529238311 1.495618e-01 3.616238e-01 9 33928372 33928612 241 - 1.171 1.078 -0.333
ENSG00000137073 E037 4.4066412 0.3192097435 6.540770e-01 8.061478e-01 9 33928613 33928835 223 - 0.564 0.774 0.892
ENSG00000137073 E038 163.5087684 0.0250463061 6.550370e-01 8.067308e-01 9 33932562 33932628 67 - 2.137 2.211 0.247
ENSG00000137073 E039 236.3595141 0.0306987374 2.499506e-01 4.878559e-01 9 33933490 33933628 139 - 2.342 2.350 0.026
ENSG00000137073 E040 8.3847278 0.0156536236 4.420056e-01 6.600934e-01 9 33933629 33933646 18 - 0.946 0.940 -0.022
ENSG00000137073 E041 7.5495855 0.1528477743 2.411230e-01 4.778592e-01 9 33933647 33933821 175 - 0.997 0.846 -0.573
ENSG00000137073 E042 52.9101772 0.0260858303 5.570938e-02 1.929777e-01 9 33934054 33934295 242 - 1.750 1.681 -0.235
ENSG00000137073 E043 28.1474619 0.0370174983 3.169795e-02 1.323236e-01 9 33934296 33934376 81 - 1.524 1.388 -0.470
ENSG00000137073 E044 1.4237372 0.0123888691 2.505073e-03 2.036138e-02 9 33935322 33935403 82 - 0.625 0.162 -2.825
ENSG00000137073 E045 5.5351689 0.0689350512 1.035518e-02 5.965773e-02 9 33935404 33935838 435 - 1.003 0.645 -1.407
ENSG00000137073 E046 113.6134712 0.0250122771 5.268260e-02 1.859290e-01 9 33935839 33935858 20 - 2.069 2.012 -0.190
ENSG00000137073 E047 103.7160422 0.0219685938 4.027052e-02 1.554076e-01 9 33935859 33935878 20 - 2.031 1.973 -0.194
ENSG00000137073 E048 280.4964200 0.0167537311 6.100292e-03 4.021154e-02 9 33941649 33941862 214 - 2.467 2.397 -0.232
ENSG00000137073 E049 254.3948818 0.0146611342 5.099538e-02 1.820438e-01 9 33943420 33943589 170 - 2.385 2.375 -0.035
ENSG00000137073 E050 338.7834630 0.0291406678 5.737490e-02 1.968758e-01 9 33944365 33944639 275 - 2.534 2.487 -0.156
ENSG00000137073 E051 299.3677463 0.0207370047 7.761956e-02 2.400536e-01 9 33948374 33948587 214 - 2.461 2.444 -0.057
ENSG00000137073 E052 2.8444308 0.0089018457 3.388007e-01 5.769466e-01 9 33948588 33948966 379 - 0.625 0.543 -0.369
ENSG00000137073 E053 245.7868125 0.0071633576 4.320931e-04 5.049848e-03 9 33953285 33953474 190 - 2.402 2.344 -0.195
ENSG00000137073 E054 117.0527197 0.0146849249 1.727788e-01 3.941836e-01 9 33956079 33956146 68 - 2.034 2.048 0.048
ENSG00000137073 E055 156.1234149 0.0101149927 7.575822e-04 7.921611e-03 9 33960826 33960878 53 - 2.223 2.140 -0.278
ENSG00000137073 E056 152.3226373 0.0054797871 4.975594e-03 3.449985e-02 9 33963726 33963791 66 - 2.175 2.148 -0.089
ENSG00000137073 E057 144.1888605 0.0004194619 1.387092e-02 7.383403e-02 9 33971651 33971737 87 - 2.123 2.141 0.059
ENSG00000137073 E058 74.1268899 0.0012200880 5.679774e-01 7.487612e-01 9 33971738 33971754 17 - 1.799 1.870 0.239
ENSG00000137073 E059 118.1493777 0.0010984087 5.316179e-03 3.628218e-02 9 33973183 33973237 55 - 2.053 2.047 -0.019
ENSG00000137073 E060 156.8508574 0.0086192441 3.253158e-03 2.492268e-02 9 33986760 33986837 78 - 2.204 2.153 -0.170
ENSG00000137073 E061 216.0589766 0.0129372641 6.209935e-03 4.076970e-02 9 33988973 33989126 154 - 2.345 2.290 -0.181
ENSG00000137073 E062 4.2157709 0.0065559846 2.554679e-05 4.698323e-04 9 33994481 33996222 1742 - 0.967 0.449 -2.187
ENSG00000137073 E063 173.2992048 0.0227353532 4.617211e-02 1.704399e-01 9 33996223 33996333 111 - 2.243 2.198 -0.149
ENSG00000137073 E064 3.2926046 0.3373983116 7.914906e-02 2.431324e-01 9 33996334 33996477 144 - 0.823 0.450 -1.638
ENSG00000137073 E065 6.1157334 0.3155071015 2.002957e-02 9.597589e-02 9 33996478 33997036 559 - 1.067 0.632 -1.697
ENSG00000137073 E066 10.6004363 0.0715806165 4.185005e-08 1.698638e-06 9 33997037 33998786 1750 - 1.397 0.621 -2.913
ENSG00000137073 E067 134.8596363 0.0126820581 1.534402e-03 1.384538e-02 9 33998787 33998864 78 - 2.164 2.074 -0.301
ENSG00000137073 E068 1.7983277 0.0759640685 5.800496e-01 7.572007e-01 9 34011627 34011664 38 - 0.284 0.455 1.006
ENSG00000137073 E069 0.6653672 0.1486385614 3.913191e-01   9 34014504 34014625 122 - 0.283 0.163 -1.008
ENSG00000137073 E070 127.7906879 0.0041918004 4.585617e-06 1.068382e-04 9 34017050 34017189 140 - 2.149 2.048 -0.339
ENSG00000137073 E071 1.8640546 0.0471098492 6.911856e-01 8.298036e-01 9 34032799 34032908 110 - 0.454 0.447 -0.036
ENSG00000137073 E072 44.1976085 0.0011545766 5.407105e-04 6.042714e-03 9 34048825 34048877 53 - 1.692 1.594 -0.332
ENSG00000137073 E073 3.6810115 0.0162746365 8.051223e-03 4.953924e-02 9 34048878 34048949 72 - 0.843 0.514 -1.393
ENSG00000137073 E074 7.5238987 0.0044132781 3.913919e-01 6.215321e-01 9 34049149 34049388 240 - 0.922 0.904 -0.067