ENSG00000136861

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000349780 ENSG00000136861 HEK293_OSMI2_6hA HEK293_TMG_6hB CDK5RAP2 protein_coding protein_coding 20.40763 23.29166 20.10922 3.565065 0.4929954 -0.2118587 4.029040 1.1712797 6.894521 0.4656631 0.2953790 2.5471908 0.20220833 0.04623333 0.3439333 0.29770000 8.597854e-05 1.229401e-25 FALSE TRUE
ENST00000360190 ENSG00000136861 HEK293_OSMI2_6hA HEK293_TMG_6hB CDK5RAP2 protein_coding protein_coding 20.40763 23.29166 20.10922 3.565065 0.4929954 -0.2118587 4.472011 6.1064079 4.530902 1.5567701 0.1949288 -0.4297056 0.21585417 0.25230000 0.2253333 -0.02696667 9.192416e-01 1.229401e-25 FALSE TRUE
ENST00000425647 ENSG00000136861 HEK293_OSMI2_6hA HEK293_TMG_6hB CDK5RAP2 protein_coding protein_coding 20.40763 23.29166 20.10922 3.565065 0.4929954 -0.2118587 2.352788 4.9720278 1.312369 1.4360250 0.6068087 -1.9136086 0.11115417 0.20393333 0.0644000 -0.13953333 1.357302e-01 1.229401e-25 FALSE TRUE
ENST00000691551 ENSG00000136861 HEK293_OSMI2_6hA HEK293_TMG_6hB CDK5RAP2 protein_coding nonsense_mediated_decay 20.40763 23.29166 20.10922 3.565065 0.4929954 -0.2118587 3.126230 4.7023852 0.000000 0.9080820 0.0000000 -8.8803137 0.15161667 0.19973333 0.0000000 -0.19973333 1.229401e-25 1.229401e-25 FALSE TRUE
MSTRG.33306.21 ENSG00000136861 HEK293_OSMI2_6hA HEK293_TMG_6hB CDK5RAP2 protein_coding   20.40763 23.29166 20.10922 3.565065 0.4929954 -0.2118587 1.490151 0.7580538 2.358635 0.3958948 0.4964779 1.6247768 0.07441667 0.03673333 0.1165667 0.07983333 5.977082e-01 1.229401e-25 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000136861 E001 0.3337900 0.0302223908 9.443499e-01   9 120388875 120388875 1 - 0.126 0.117 -0.133
ENSG00000136861 E002 0.3337900 0.0302223908 9.443499e-01   9 120388876 120388880 5 - 0.126 0.117 -0.133
ENSG00000136861 E003 0.3337900 0.0302223908 9.443499e-01   9 120388881 120388886 6 - 0.126 0.117 -0.133
ENSG00000136861 E004 0.3337900 0.0302223908 9.443499e-01   9 120388887 120388889 3 - 0.126 0.117 -0.133
ENSG00000136861 E005 0.3337900 0.0302223908 9.443499e-01   9 120388890 120388890 1 - 0.126 0.117 -0.133
ENSG00000136861 E006 1.1799741 0.0175990373 2.095740e-01   9 120388891 120388901 11 - 0.430 0.209 -1.454
ENSG00000136861 E007 1.3108423 0.0136968632 4.021277e-01   9 120388902 120388903 2 - 0.430 0.284 -0.871
ENSG00000136861 E008 3.8398888 0.0066743575 3.427250e-01 5.804146e-01 9 120388904 120388912 9 - 0.607 0.749 0.601
ENSG00000136861 E009 7.8034589 0.0056009432 7.484703e-01 8.657839e-01 9 120388913 120388918 6 - 0.926 0.968 0.157
ENSG00000136861 E010 135.6682784 0.0003605576 1.960383e-06 5.127338e-05 9 120388919 120389194 276 - 2.046 2.200 0.514
ENSG00000136861 E011 61.2235258 0.0007236620 2.947356e-03 2.308500e-02 9 120389195 120389195 1 - 1.716 1.858 0.477
ENSG00000136861 E012 65.0621587 0.0007150250 2.273478e-04 2.972659e-03 9 120389196 120389197 2 - 1.725 1.895 0.574
ENSG00000136861 E013 66.4717738 0.0006588380 1.825205e-04 2.477514e-03 9 120389198 120389198 1 - 1.733 1.903 0.575
ENSG00000136861 E014 66.9336715 0.0007714885 2.740280e-04 3.467938e-03 9 120389199 120389200 2 - 1.738 1.905 0.562
ENSG00000136861 E015 86.1981195 0.0006802159 1.535862e-06 4.131550e-05 9 120389201 120389235 35 - 1.828 2.024 0.659
ENSG00000136861 E016 64.6590352 0.0007432117 1.678175e-06 4.476561e-05 9 120389236 120389241 6 - 1.687 1.910 0.752
ENSG00000136861 E017 101.7136456 0.0004405947 3.667755e-08 1.511818e-06 9 120389242 120389287 46 - 1.894 2.098 0.684
ENSG00000136861 E018 73.8231174 0.0005747047 1.386869e-04 1.964322e-03 9 120389288 120389292 5 - 1.782 1.946 0.555
ENSG00000136861 E019 8.8911948 0.0768352216 1.724104e-01 3.937333e-01 9 120389293 120389740 448 - 0.853 1.086 0.869
ENSG00000136861 E020 115.2386670 0.0003364441 3.181422e-09 1.664957e-07 9 120389741 120389787 47 - 1.945 2.150 0.687
ENSG00000136861 E021 103.0582706 0.1780555987 5.457513e-02 1.904120e-01 9 120389788 120394511 4724 - 1.669 2.190 1.752
ENSG00000136861 E022 160.1147275 0.0015571062 5.765925e-10 3.508372e-08 9 120394512 120394638 127 - 2.080 2.294 0.717
ENSG00000136861 E023 11.2144088 0.1475608947 1.646332e-01 3.835502e-01 9 120394639 120397513 2875 - 0.872 1.213 1.251
ENSG00000136861 E024 191.7287002 0.0023870203 2.745910e-10 1.771728e-08 9 120400742 120400885 144 - 2.149 2.377 0.761
ENSG00000136861 E025 0.1426347 0.0318333867 4.485416e-01   9 120400886 120401019 134 - 0.126 0.000 -9.611
ENSG00000136861 E026 283.3202517 0.0019657453 2.428580e-10 1.587882e-08 9 120402806 120403071 266 - 2.338 2.533 0.650
ENSG00000136861 E027 6.5852408 0.2588587547 9.648195e-02 2.756027e-01 9 120403072 120403242 171 - 0.609 1.025 1.647
ENSG00000136861 E028 4.5963780 0.1791118563 1.831565e-01 4.080093e-01 9 120403243 120403315 73 - 0.566 0.862 1.228
ENSG00000136861 E029 13.3683418 0.1611457333 2.422411e-01 4.790408e-01 9 120403316 120404035 720 - 0.960 1.277 1.140
ENSG00000136861 E030 138.6241863 0.0006707755 5.570025e-09 2.765843e-07 9 120404036 120404113 78 - 2.030 2.224 0.648
ENSG00000136861 E031 32.7998331 0.1851490729 9.807125e-02 2.783834e-01 9 120404114 120406145 2032 - 1.227 1.687 1.586
ENSG00000136861 E032 13.3985222 0.3902797998 8.673587e-01 9.344922e-01 9 120406146 120407011 866 - 0.999 1.262 0.943
ENSG00000136861 E033 78.5911101 0.0087988271 4.189781e-03 3.021193e-02 9 120407012 120407087 76 - 1.791 1.978 0.628
ENSG00000136861 E034 93.7678072 0.0021481702 1.110302e-08 5.150365e-07 9 120407088 120407233 146 - 1.821 2.075 0.851
ENSG00000136861 E035 49.6793312 0.0008075817 1.369168e-06 3.734001e-05 9 120407234 120407246 13 - 1.550 1.805 0.866
ENSG00000136861 E036 43.3992984 0.0010193355 3.385227e-05 5.980334e-04 9 120407247 120407248 2 - 1.511 1.744 0.794
ENSG00000136861 E037 10.7288811 0.1852750146 4.472623e-01 6.636965e-01 9 120407249 120408346 1098 - 0.924 1.162 0.874
ENSG00000136861 E038 154.6656199 0.0046089230 1.033864e-03 1.016645e-02 9 120408347 120408468 122 - 2.105 2.256 0.506
ENSG00000136861 E039 201.7796863 0.0052195778 9.660110e-02 2.758111e-01 9 120409127 120409316 190 - 2.261 2.339 0.260
ENSG00000136861 E040 134.2387755 0.0017173997 8.726368e-02 2.587268e-01 9 120411358 120411474 117 - 2.090 2.156 0.220
ENSG00000136861 E041 2.2052302 0.6996720178 8.021610e-01 8.975779e-01 9 120411680 120412366 687 - 0.382 0.584 1.008
ENSG00000136861 E042 171.6524195 0.0021769763 1.802692e-01 4.043943e-01 9 120415040 120415159 120 - 2.208 2.260 0.175
ENSG00000136861 E043 177.1277419 0.0010905463 1.499607e-01 3.622636e-01 9 120419788 120419901 114 - 2.222 2.271 0.162
ENSG00000136861 E044 127.0464125 0.0017121838 1.958138e-01 4.243815e-01 9 120419902 120419960 59 - 2.076 2.128 0.176
ENSG00000136861 E045 101.5974443 0.0045266410 1.418918e-01 3.502856e-01 9 120422693 120422741 49 - 1.969 2.045 0.256
ENSG00000136861 E046 0.8855973 0.0193503715 4.969751e-01   9 120437281 120437294 14 - 0.224 0.348 0.861
ENSG00000136861 E047 211.7425946 0.0019853123 5.902006e-01 7.638755e-01 9 120437295 120437527 233 - 2.314 2.337 0.077
ENSG00000136861 E048 148.2551260 0.0026956971 6.821935e-01 8.240921e-01 9 120439399 120439517 119 - 2.176 2.167 -0.032
ENSG00000136861 E049 324.1941035 0.0050899558 5.515908e-02 1.916893e-01 9 120439518 120439972 455 - 2.544 2.477 -0.221
ENSG00000136861 E050 21.6742288 0.1658141002 6.941922e-01 8.318267e-01 9 120439973 120440297 325 - 1.368 1.342 -0.089
ENSG00000136861 E051 85.9563344 0.1730495677 1.773927e-01 4.003023e-01 9 120440298 120443619 3322 - 2.033 1.832 -0.675
ENSG00000136861 E052 123.6712346 0.0014704473 1.691738e-02 8.514746e-02 9 120443620 120443742 123 - 2.135 2.052 -0.279
ENSG00000136861 E053 136.0848980 0.0007975909 6.437352e-01 7.993701e-01 9 120447895 120448126 232 - 2.141 2.130 -0.035
ENSG00000136861 E054 222.7900362 0.0004281133 9.270914e-06 1.965561e-04 9 120453456 120453873 418 - 2.403 2.296 -0.356
ENSG00000136861 E055 132.5580992 0.0004088122 3.776544e-03 2.789211e-02 9 120458450 120458622 173 - 2.169 2.083 -0.290
ENSG00000136861 E056 99.3582207 0.0024584744 6.328433e-02 2.101061e-01 9 120460572 120460667 96 - 2.039 1.966 -0.244
ENSG00000136861 E057 0.7721051 0.0213492706 1.407096e-01   9 120460668 120460747 80 - 0.371 0.116 -2.136
ENSG00000136861 E058 1.5835372 0.0116300128 6.433339e-01 7.990587e-01 9 120465798 120467429 1632 - 0.371 0.454 0.449
ENSG00000136861 E059 115.9037900 0.0027282123 1.138388e-03 1.095571e-02 9 120467860 120467997 138 - 2.131 2.005 -0.423
ENSG00000136861 E060 71.6447709 0.0183644716 1.210102e-01 3.174824e-01 9 120470111 120470217 107 - 1.913 1.810 -0.345
ENSG00000136861 E061 26.4247410 0.0090358965 7.488046e-01 8.659995e-01 9 120470218 120470220 3 - 1.449 1.432 -0.059
ENSG00000136861 E062 99.6909337 0.0006111997 2.808127e-06 7.016103e-05 9 120471748 120471878 131 - 2.086 1.920 -0.559
ENSG00000136861 E063 2.0818793 0.0398865536 2.508623e-01 4.889108e-01 9 120475032 120475106 75 - 0.371 0.577 1.038
ENSG00000136861 E064 1.7623289 0.0106100664 2.891779e-01 5.296889e-01 9 120475206 120475281 76 - 0.527 0.349 -0.942
ENSG00000136861 E065 1.6278199 0.3042745943 7.483438e-01 8.657202e-01 9 120475664 120475733 70 - 0.376 0.452 0.416
ENSG00000136861 E066 96.4152028 0.0041130395 3.886058e-05 6.722316e-04 9 120477350 120477450 101 - 2.082 1.891 -0.641
ENSG00000136861 E067 109.5117205 0.0010061920 5.230719e-07 1.610400e-05 9 120487294 120487437 144 - 2.131 1.953 -0.595
ENSG00000136861 E068 0.4764247 0.0227200679 5.144047e-01   9 120490746 120491306 561 - 0.224 0.117 -1.132
ENSG00000136861 E069 131.4440205 0.0038567094 4.842272e-07 1.505270e-05 9 120491307 120491477 171 - 2.219 2.009 -0.703
ENSG00000136861 E070 1.1436295 0.0141242192 3.147349e-01   9 120517684 120517756 73 - 0.224 0.405 1.189
ENSG00000136861 E071 4.8090166 0.0057563029 6.453290e-01 8.003936e-01 9 120517757 120517886 130 - 0.807 0.749 -0.230
ENSG00000136861 E072 108.6690722 0.0029418163 6.810720e-07 2.035787e-05 9 120518427 120518523 97 - 2.137 1.928 -0.699
ENSG00000136861 E073 84.3474773 0.0033898509 1.224177e-08 5.615706e-07 9 120518524 120518599 76 - 2.054 1.787 -0.898
ENSG00000136861 E074 64.7223104 0.0008831820 5.699073e-08 2.242432e-06 9 120518600 120518645 46 - 1.932 1.690 -0.815
ENSG00000136861 E075 66.1510166 0.0009984801 9.589069e-08 3.575070e-06 9 120524986 120525078 93 - 1.938 1.701 -0.800
ENSG00000136861 E076 82.6132739 0.0051171759 1.539959e-05 3.051581e-04 9 120527806 120527905 100 - 2.029 1.808 -0.742
ENSG00000136861 E077 58.2456887 0.0220953616 2.136918e-02 1.005587e-01 9 120527906 120527925 20 - 1.868 1.674 -0.658
ENSG00000136861 E078 77.8915976 0.0217069886 6.278436e-03 4.108917e-02 9 120528744 120528773 30 - 2.003 1.780 -0.752
ENSG00000136861 E079 65.1199711 0.0270863929 3.376426e-03 2.562315e-02 9 120528774 120528797 24 - 1.945 1.673 -0.917
ENSG00000136861 E080 1.6054776 0.1801561710 3.008970e-01 5.413740e-01 9 120528893 120528904 12 - 0.523 0.287 -1.319
ENSG00000136861 E081 0.0000000       9 120529304 120529422 119 -      
ENSG00000136861 E082 129.7595463 0.0032323342 1.840393e-08 8.149700e-07 9 120529978 120530140 163 - 2.224 1.991 -0.777
ENSG00000136861 E083 0.4702677 0.0217681645 5.092287e-01   9 120530141 120530142 2 - 0.224 0.116 -1.138
ENSG00000136861 E084 0.0000000       9 120532467 120532555 89 -      
ENSG00000136861 E085 116.5276745 0.0005044064 7.136097e-13 7.513164e-11 9 120536372 120536526 155 - 2.180 1.940 -0.804
ENSG00000136861 E086 89.6877491 0.0004619212 8.651699e-08 3.261393e-06 9 120539041 120539164 124 - 2.053 1.854 -0.667
ENSG00000136861 E087 79.7197152 0.0004602449 2.485536e-07 8.358441e-06 9 120545714 120545790 77 - 2.003 1.801 -0.681
ENSG00000136861 E088 85.4842348 0.0005514760 3.584560e-06 8.651801e-05 9 120550792 120550902 111 - 2.022 1.845 -0.594
ENSG00000136861 E089 69.9085050 0.0006183998 6.791610e-09 3.304790e-07 9 120568321 120568388 68 - 1.963 1.717 -0.831
ENSG00000136861 E090 3.3664799 0.2509513199 9.986192e-01 1.000000e+00 9 120570714 120570899 186 - 0.642 0.625 -0.074
ENSG00000136861 E091 0.8383617 0.0200732895 5.855671e-01   9 120571747 120571973 227 - 0.304 0.209 -0.715
ENSG00000136861 E092 41.2326632 0.0078037456 1.007700e-03 9.971959e-03 9 120571974 120571976 3 - 1.731 1.507 -0.763
ENSG00000136861 E093 57.3319381 0.0007687376 1.886570e-05 3.636996e-04 9 120571977 120572041 65 - 1.861 1.662 -0.672
ENSG00000136861 E094 48.3364935 0.0007503830 5.494898e-06 1.251724e-04 9 120579920 120580170 251 - 1.801 1.572 -0.775