ENSG00000134744

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000470212 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding retained_intron 16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 0.9773508 0.5060533 1.006065 0.2584385 0.0435167 0.97740145 0.06570000 0.05010000 0.04046667 -0.009633333 9.662456e-01 1.293739e-08   FALSE
ENST00000471623 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding protein_coding 16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 0.5405260 0.4392282 0.000000 0.4392282 0.0000000 -5.48937664 0.05485833 0.04473333 0.00000000 -0.044733333 8.363165e-01 1.293739e-08 FALSE FALSE
ENST00000474453 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding protein_coding 16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 2.1230268 1.8149281 1.762277 0.4490169 0.8974783 -0.04223539 0.13957083 0.15590000 0.06760000 -0.088300000 7.228278e-01 1.293739e-08 FALSE TRUE
ENST00000494469 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding protein_coding 16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 0.7399048 1.8708784 0.000000 0.7447889 0.0000000 -7.55526278 0.07767083 0.15636667 0.00000000 -0.156366667 1.293739e-08 1.293739e-08 FALSE FALSE
MSTRG.1203.10 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding   16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 1.8185474 1.4404652 2.474968 0.5180822 0.4470891 0.77671159 0.09507917 0.12373333 0.10150000 -0.022233333 9.608219e-01 1.293739e-08 TRUE TRUE
MSTRG.1203.11 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding   16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 4.1618495 1.5950125 8.106569 0.3694123 0.5972974 2.33828548 0.20092917 0.13970000 0.32600000 0.186300000 1.728040e-02 1.293739e-08 FALSE TRUE
MSTRG.1203.16 ENSG00000134744 HEK293_OSMI2_6hA HEK293_TMG_6hB TUT4 protein_coding   16.50757 11.31496 24.89353 1.247147 1.302493 1.136845 1.1646140 0.1685060 2.799031 0.1685060 0.6950670 3.97602829 0.05175833 0.01630000 0.11003333 0.093733333 1.838539e-01 1.293739e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000134744 E001 0.0000000       1 52408282 52408284 3 -      
ENSG00000134744 E002 0.1779838 0.0357578732 1.000000e+00   1 52408285 52408460 176 - 0.077 0.000 -9.773
ENSG00000134744 E003 2.6697576 1.9856385155 8.204548e-01 9.083696e-01 1 52409486 52409606 121 - 0.625 0.000 -14.571
ENSG00000134744 E004 0.0000000       1 52423275 52423402 128 -      
ENSG00000134744 E005 0.0000000       1 52423403 52423429 27 -      
ENSG00000134744 E006 0.1614157 0.0338847535 1.000000e+00   1 52423430 52423460 31 - 0.077 0.000 -12.457
ENSG00000134744 E007 0.7201176 0.0443642830 1.000000e+00   1 52423461 52423530 70 - 0.200 0.187 -0.114
ENSG00000134744 E008 1.7547963 0.1077507951 1.111166e-02 6.283435e-02 1 52423531 52423562 32 - 0.200 0.685 2.718
ENSG00000134744 E009 2.3287651 0.0149227814 6.869357e-04 7.330494e-03 1 52423563 52423594 32 - 0.249 0.805 2.798
ENSG00000134744 E010 4.6012752 0.0061126817 1.043724e-02 6.002129e-02 1 52423595 52423635 41 - 0.570 0.931 1.473
ENSG00000134744 E011 9.0961787 0.0036667411 1.835672e-01 4.085545e-01 1 52423636 52423712 77 - 0.912 1.069 0.581
ENSG00000134744 E012 7.6503659 0.0046384932 4.492519e-03 3.189919e-02 1 52423713 52423730 18 - 0.767 1.108 1.285
ENSG00000134744 E013 42.3940598 0.0009014007 5.187285e-05 8.586805e-04 1 52423731 52423797 67 - 1.513 1.746 0.794
ENSG00000134744 E014 74.4080947 0.0004965398 9.106477e-05 1.382028e-03 1 52423798 52423867 70 - 1.775 1.950 0.589
ENSG00000134744 E015 88.2039947 0.0004648060 2.741329e-05 4.987045e-04 1 52423868 52423913 46 - 1.849 2.022 0.582
ENSG00000134744 E016 94.5983879 0.0005298764 1.133382e-07 4.148154e-06 1 52423914 52424002 89 - 1.866 2.076 0.703
ENSG00000134744 E017 7.3916456 0.0225406030 7.101590e-01 8.418779e-01 1 52424003 52425348 1346 - 0.892 0.838 -0.207
ENSG00000134744 E018 134.3776819 0.0019244090 6.659989e-07 1.995799e-05 1 52425349 52425507 159 - 2.024 2.214 0.638
ENSG00000134744 E019 107.1459429 0.0058721236 4.145107e-04 4.871856e-03 1 52431013 52431118 106 - 1.930 2.107 0.594
ENSG00000134744 E020 56.4186519 0.0010240253 2.411146e-02 1.094015e-01 1 52431119 52431125 7 - 1.673 1.794 0.407
ENSG00000134744 E021 100.8347934 0.0035042943 2.705330e-03 2.159978e-02 1 52431126 52431223 98 - 1.915 2.056 0.471
ENSG00000134744 E022 57.5061527 0.0024972725 2.002045e-02 9.595655e-02 1 52431224 52431246 23 - 1.678 1.808 0.440
ENSG00000134744 E023 70.0442669 0.0005434581 2.145180e-03 1.804542e-02 1 52431247 52431287 41 - 1.762 1.905 0.484
ENSG00000134744 E024 66.0488531 0.0107474467 1.045376e-02 6.008576e-02 1 52431288 52431316 29 - 1.727 1.899 0.582
ENSG00000134744 E025 107.9363850 0.0040992085 2.813256e-05 5.100412e-04 1 52431317 52431460 144 - 1.928 2.125 0.662
ENSG00000134744 E026 6.3783771 0.3298289425 3.612326e-01 5.967097e-01 1 52431461 52433088 1628 - 0.683 1.064 1.470
ENSG00000134744 E027 5.1532129 0.1399929042 2.039190e-01 4.345496e-01 1 52433089 52435364 2276 - 0.652 0.931 1.110
ENSG00000134744 E028 83.7405947 0.0004462518 1.792538e-08 7.950225e-07 1 52435365 52435465 101 - 1.805 2.037 0.781
ENSG00000134744 E029 150.6885360 0.0003254171 8.449998e-02 2.537341e-01 1 52436755 52436963 209 - 2.117 2.177 0.201
ENSG00000134744 E030 31.2720299 0.0013998613 6.671520e-01 8.144414e-01 1 52436964 52436975 12 - 1.469 1.445 -0.085
ENSG00000134744 E031 19.9819957 0.0034169883 5.296368e-01 7.217965e-01 1 52436976 52436978 3 - 1.261 1.319 0.205
ENSG00000134744 E032 20.4968372 0.0767598856 1.197937e-01 3.155367e-01 1 52436979 52437701 723 - 1.207 1.436 0.802
ENSG00000134744 E033 108.4120042 0.0029900578 3.138937e-01 5.541167e-01 1 52438220 52438335 116 - 2.003 1.963 -0.135
ENSG00000134744 E034 82.1955076 0.0004538613 3.359739e-01 5.744152e-01 1 52445787 52445869 83 - 1.881 1.843 -0.126
ENSG00000134744 E035 80.9098102 0.0005672865 5.129774e-01 7.102182e-01 1 52445957 52446004 48 - 1.868 1.844 -0.083
ENSG00000134744 E036 113.3400517 0.0044008074 4.016432e-01 6.297038e-01 1 52446265 52446399 135 - 2.018 1.978 -0.134
ENSG00000134744 E037 61.9672881 0.0018564005 6.821312e-01 8.240472e-01 1 52446400 52446442 43 - 1.753 1.734 -0.063
ENSG00000134744 E038 66.6843591 0.0171774947 8.976934e-01 9.506553e-01 1 52446590 52446667 78 - 1.781 1.771 -0.034
ENSG00000134744 E039 72.8791230 0.0012115135 4.243156e-01 6.468192e-01 1 52458336 52458449 114 - 1.805 1.847 0.141
ENSG00000134744 E040 0.3559677 0.4692934807 8.471530e-01   1 52460957 52461133 177 - 0.146 0.000 -12.262
ENSG00000134744 E041 85.0287633 0.0006127255 8.827850e-01 9.427661e-01 1 52461134 52461223 90 - 1.881 1.891 0.035
ENSG00000134744 E042 84.0852481 0.0005895617 5.426020e-01 7.309717e-01 1 52461513 52461616 104 - 1.887 1.866 -0.072
ENSG00000134744 E043 0.6190593 0.0256726523 1.000000e+00   1 52461617 52461711 95 - 0.199 0.187 -0.110
ENSG00000134744 E044 65.5949220 0.0006834214 9.201131e-01 9.622586e-01 1 52461712 52461769 58 - 1.772 1.782 0.035
ENSG00000134744 E045 4.9973913 0.0150011037 1.775699e-03 1.553604e-02 1 52461770 52462090 321 - 0.569 1.006 1.755
ENSG00000134744 E046 4.3507733 0.0086648281 6.878915e-01 8.277460e-01 1 52462178 52462479 302 - 0.688 0.626 -0.265
ENSG00000134744 E047 24.4412584 0.1796321864 9.589838e-02 2.745730e-01 1 52462480 52463777 1298 - 1.211 1.603 1.355
ENSG00000134744 E048 1.2726600 0.0867249363 1.942416e-01   1 52464963 52465069 107 - 0.249 0.498 1.476
ENSG00000134744 E049 90.4376983 0.0005025364 8.934496e-01 9.483809e-01 1 52465070 52465173 104 - 1.914 1.914 0.000
ENSG00000134744 E050 84.5001457 0.0020923257 9.188762e-03 5.465912e-02 1 52468181 52468267 87 - 1.910 1.786 -0.420
ENSG00000134744 E051 0.3447487 0.6878470429 1.273781e-01   1 52468268 52468490 223 - 0.000 0.322 13.111
ENSG00000134744 E052 96.6271330 0.0132580991 4.818395e-01 6.883195e-01 1 52471952 52472102 151 - 1.949 1.907 -0.141
ENSG00000134744 E053 285.9077979 0.0004686621 1.913183e-02 9.290893e-02 1 52474832 52475535 704 - 2.423 2.370 -0.177
ENSG00000134744 E054 67.2505742 0.0483962756 7.066946e-01 8.397332e-01 1 52477708 52477737 30 - 1.789 1.771 -0.060
ENSG00000134744 E055 123.9191504 0.0028681097 4.866145e-02 1.765022e-01 1 52477738 52477882 145 - 2.068 1.986 -0.275
ENSG00000134744 E056 117.0681416 0.0096337443 7.608173e-03 4.751593e-02 1 52481423 52481635 213 - 2.061 1.910 -0.506
ENSG00000134744 E057 59.2507933 0.0008458056 5.197218e-03 3.565657e-02 1 52481804 52481842 39 - 1.768 1.621 -0.497
ENSG00000134744 E058 75.7464656 0.0006810477 1.383721e-02 7.369156e-02 1 52481843 52481923 81 - 1.866 1.754 -0.377
ENSG00000134744 E059 98.0275679 0.0005644182 6.172062e-04 6.729231e-03 1 52488909 52489035 127 - 1.983 1.843 -0.470
ENSG00000134744 E060 68.6289758 0.0005875279 1.620433e-04 2.242213e-03 1 52490732 52490801 70 - 1.838 1.648 -0.640
ENSG00000134744 E061 49.1433631 0.0021338632 1.177304e-02 6.552610e-02 1 52493611 52493662 52 - 1.689 1.535 -0.524
ENSG00000134744 E062 61.0472431 0.0006058679 1.328276e-02 7.157149e-02 1 52495427 52495515 89 - 1.775 1.648 -0.428
ENSG00000134744 E063 91.8579968 0.0004265508 2.757489e-05 5.012149e-04 1 52497006 52497183 178 - 1.960 1.779 -0.609
ENSG00000134744 E064 84.5312249 0.0017624819 5.252993e-07 1.616085e-05 1 52509596 52509712 117 - 1.934 1.679 -0.861
ENSG00000134744 E065 2.7160882 0.0357316303 1.595218e-01 3.760528e-01 1 52514778 52515890 1113 - 0.438 0.681 1.123
ENSG00000134744 E066 89.3474769 0.0215289775 2.896491e-02 1.242588e-01 1 52515891 52516054 164 - 1.946 1.760 -0.625
ENSG00000134744 E067 169.9552529 0.0002541655 4.040213e-12 3.747248e-10 1 52525563 52526019 457 - 2.233 2.008 -0.753
ENSG00000134744 E068 44.2552281 0.0008271694 1.026571e-03 1.011754e-02 1 52526020 52526049 30 - 1.651 1.445 -0.705
ENSG00000134744 E069 103.2817834 0.0005778171 2.200313e-11 1.787010e-09 1 52526050 52526373 324 - 2.029 1.734 -0.993
ENSG00000134744 E070 0.7838716 0.0693806333 1.847041e-01   1 52529768 52529873 106 - 0.294 0.000 -14.502
ENSG00000134744 E071 0.1426347 0.0327906277 1.000000e+00   1 52529874 52529885 12 - 0.077 0.000 -12.463
ENSG00000134744 E072 0.3559677 0.4692934807 8.471530e-01   1 52534987 52535122 136 - 0.146 0.000 -12.262
ENSG00000134744 E073 0.4654660 0.0266757351 4.043356e-01   1 52538524 52538643 120 - 0.199 0.000 -14.065
ENSG00000134744 E074 26.5063954 0.0026349634 1.453174e-01 3.553747e-01 1 52552931 52553090 160 - 1.421 1.308 -0.393
ENSG00000134744 E075 1.8434589 0.0140437173 1.142237e-01 3.061812e-01 1 52553091 52553100 10 - 0.495 0.187 -1.988
ENSG00000134744 E076 3.0023460 0.1665148711 2.218194e-01 4.557117e-01 1 52553433 52553494 62 - 0.473 0.727 1.135