ENSG00000134313

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000687912 ENSG00000134313 HEK293_OSMI2_6hA HEK293_TMG_6hB KIDINS220 protein_coding protein_coding 14.34463 7.226945 25.75439 1.653729 1.046733 1.831926 0.3900464 0.6510388 0.000000 0.3575006 0.0000000 -6.046663 0.06682083 0.07296667 0.0000000 -0.07296667 8.351953e-02 2.082493e-23 FALSE TRUE
MSTRG.17915.12 ENSG00000134313 HEK293_OSMI2_6hA HEK293_TMG_6hB KIDINS220 protein_coding   14.34463 7.226945 25.75439 1.653729 1.046733 1.831926 9.5775297 6.0686177 16.534770 1.3054380 0.8062824 1.444560 0.69200833 0.84790000 0.6416000 -0.20630000 1.273491e-03 2.082493e-23 FALSE TRUE
MSTRG.17915.18 ENSG00000134313 HEK293_OSMI2_6hA HEK293_TMG_6hB KIDINS220 protein_coding   14.34463 7.226945 25.75439 1.653729 1.046733 1.831926 3.2399048 0.0000000 7.641429 0.0000000 0.3649490 9.579585 0.13864167 0.00000000 0.2975333 0.29753333 2.082493e-23 2.082493e-23 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000134313 E001 0.0000000       2 8721081 8721145 65 -      
ENSG00000134313 E002 0.0000000       2 8721146 8721154 9 -      
ENSG00000134313 E003 0.0000000       2 8721155 8721217 63 -      
ENSG00000134313 E004 10.7484456 0.0352790201 4.170234e-02 1.591536e-01 2 8721218 8723412 2195 - 0.999 0.846 -0.579
ENSG00000134313 E005 2.9484761 0.1392096130 8.968186e-01 9.502076e-01 2 8723413 8724060 648 - 0.487 0.635 0.680
ENSG00000134313 E006 6.4941432 0.2918785992 7.467211e-01 8.647541e-01 2 8724061 8725559 1499 - 0.778 0.834 0.222
ENSG00000134313 E007 1.1608332 0.0553909064 8.758394e-02   2 8725560 8725599 40 - 0.323 0.000 -13.548
ENSG00000134313 E008 1.1302857 0.0436875358 4.471945e-01   2 8725600 8725667 68 - 0.289 0.220 -0.517
ENSG00000134313 E009 0.6246688 0.0193129340 2.677928e-01   2 8726887 8726943 57 - 0.212 0.000 -12.733
ENSG00000134313 E010 0.1614157 0.0335983469 1.000000e+00   2 8727189 8727267 79 - 0.063 0.000 -10.734
ENSG00000134313 E011 0.3150090 0.0429656284 4.418471e-01   2 8728858 8728877 20 - 0.063 0.221 2.081
ENSG00000134313 E012 0.7912460 0.0193475725 1.166782e-01   2 8728878 8728928 51 - 0.118 0.476 2.665
ENSG00000134313 E013 1.3686115 0.2321715867 1.336674e-01   2 8728929 8728930 2 - 0.207 0.632 2.423
ENSG00000134313 E014 6.6561150 0.1770747049 4.211840e-03 3.032978e-02 2 8728931 8728981 51 - 0.533 1.264 2.848
ENSG00000134313 E015 114.3241340 1.1482700449 1.471982e-01 3.583139e-01 2 8728982 8729309 328 - 1.680 2.435 2.532
ENSG00000134313 E016 145.8787975 1.2818525379 2.203649e-01 4.539756e-01 2 8729310 8729504 195 - 1.847 2.488 2.147
ENSG00000134313 E017 155.9066161 1.3412626298 2.868040e-01 5.275008e-01 2 8729505 8729783 279 - 1.925 2.464 1.802
ENSG00000134313 E018 237.7717647 1.5036759940 3.417677e-01 5.795291e-01 2 8729784 8730200 417 - 2.123 2.626 1.678
ENSG00000134313 E019 548.8570106 1.8092691135 4.231162e-01 6.459387e-01 2 8730201 8731439 1239 - 2.513 2.950 1.453
ENSG00000134313 E020 238.1880931 1.5483094504 4.565901e-01 6.707105e-01 2 8731440 8731952 513 - 2.180 2.542 1.207
ENSG00000134313 E021 54.6884214 0.7960202234 3.479265e-01 5.853656e-01 2 8731953 8731982 30 - 1.556 1.899 1.161
ENSG00000134313 E022 2.3989519 0.0092211572 2.320765e-01 4.676198e-01 2 8733344 8733443 100 - 0.483 0.367 -0.622
ENSG00000134313 E023 56.4243696 0.0881745782 2.432634e-01 4.803201e-01 2 8733444 8733475 32 - 1.591 1.874 0.956
ENSG00000134313 E024 122.0317626 0.0053460825 1.428637e-01 3.517578e-01 2 8733476 8733680 205 - 1.936 2.186 0.837
ENSG00000134313 E025 99.0480139 0.0202929743 4.019553e-01 6.300109e-01 2 8734655 8734753 99 - 1.876 2.003 0.426
ENSG00000134313 E026 107.5562455 0.0203762194 3.334504e-01 5.720070e-01 2 8736868 8736999 132 - 1.913 2.030 0.391
ENSG00000134313 E027 9.7751287 0.2808377415 2.719099e-01 5.117797e-01 2 8737000 8740050 3051 - 0.962 0.821 -0.538
ENSG00000134313 E028 0.8402147 0.2048729346 2.231401e-01   2 8740051 8740112 62 - 0.254 0.000 -13.076
ENSG00000134313 E029 0.5008152 0.0558126034 4.233716e-01   2 8740113 8740151 39 - 0.168 0.000 -12.322
ENSG00000134313 E030 0.3393995 0.0274401704 7.054489e-01   2 8740152 8740184 33 - 0.119 0.000 -11.735
ENSG00000134313 E031 1.1608332 0.0553909064 8.758394e-02   2 8740185 8740544 360 - 0.323 0.000 -13.548
ENSG00000134313 E032 0.0000000       2 8746505 8746506 2 -      
ENSG00000134313 E033 0.0000000       2 8746507 8746509 3 -      
ENSG00000134313 E034 0.0000000       2 8746510 8746516 7 -      
ENSG00000134313 E035 1.4107533 0.0121876737 4.029393e-02 1.554696e-01 2 8746517 8747144 628 - 0.382 0.000 -13.902
ENSG00000134313 E036 0.4466850 0.0217681645 4.229644e-01   2 8747145 8747201 57 - 0.167 0.000 -12.316
ENSG00000134313 E037 1.5477785 0.0121989077 2.106838e-01 4.426117e-01 2 8747202 8747886 685 - 0.382 0.221 -1.090
ENSG00000134313 E038 92.4135138 0.0101252196 3.809213e-01 6.129644e-01 2 8747887 8748000 114 - 1.844 1.978 0.452
ENSG00000134313 E039 0.3559677 0.8172779587 1.000000e+00   2 8748001 8748441 441 - 0.123 0.000 -11.793
ENSG00000134313 E040 0.6765862 0.4565454056 3.928060e-01   2 8748442 8749370 929 - 0.215 0.000 -12.766
ENSG00000134313 E041 0.1779838 0.0821603403 1.000000e+00   2 8749371 8749421 51 - 0.064 0.000 -10.738
ENSG00000134313 E042 0.8026527 0.0172671820 1.758951e-01   2 8749422 8750111 690 - 0.252 0.000 -13.056
ENSG00000134313 E043 115.1634359 0.0076141027 3.575263e-01 5.937143e-01 2 8750112 8750335 224 - 1.937 2.076 0.464
ENSG00000134313 E044 0.0000000       2 8751292 8751296 5 -      
ENSG00000134313 E045 0.0000000       2 8751297 8751302 6 -      
ENSG00000134313 E046 0.3641499 0.0292764537 4.461403e-01   2 8751303 8751465 163 - 0.063 0.221 2.080
ENSG00000134313 E047 101.3325436 0.0166057443 1.577283e-01 3.732913e-01 2 8751466 8751644 179 - 1.895 1.975 0.269
ENSG00000134313 E048 0.0000000       2 8751645 8751952 308 -      
ENSG00000134313 E049 0.7145081 0.0254469780 3.167002e-01   2 8757194 8757787 594 - 0.119 0.367 2.080
ENSG00000134313 E050 0.3641499 0.0292764537 4.461403e-01   2 8769462 8770669 1208 - 0.063 0.221 2.080
ENSG00000134313 E051 120.5353286 0.0300446856 2.927340e-02 1.251995e-01 2 8770670 8770832 163 - 1.989 1.969 -0.070
ENSG00000134313 E052 114.4936247 0.0184971855 8.042491e-03 4.950524e-02 2 8776748 8776878 131 - 1.968 1.949 -0.065
ENSG00000134313 E053 56.1576043 0.0102847642 2.980069e-02 1.267448e-01 2 8776879 8776892 14 - 1.656 1.674 0.062
ENSG00000134313 E054 2.3198836 0.0094733747 2.302955e-01 4.654726e-01 2 8776893 8778638 1746 - 0.483 0.366 -0.622
ENSG00000134313 E055 101.4466541 0.0084932793 1.095721e-03 1.064219e-02 2 8778639 8778719 81 - 1.917 1.894 -0.078
ENSG00000134313 E056 64.4750452 0.0131828481 1.385719e-03 1.279646e-02 2 8778720 8778727 8 - 1.730 1.662 -0.230
ENSG00000134313 E057 1.2269022 0.0502954411 9.055687e-01   2 8778728 8778895 168 - 0.252 0.368 0.763
ENSG00000134313 E058 179.0568245 0.0223315572 2.124004e-03 1.789831e-02 2 8778896 8779139 244 - 2.167 2.110 -0.191
ENSG00000134313 E059 111.7956475 0.0209645880 2.227911e-03 1.857573e-02 2 8779674 8779814 141 - 1.966 1.903 -0.209
ENSG00000134313 E060 152.4712448 0.0297484042 3.301550e-02 1.360923e-01 2 8785741 8786030 290 - 2.087 2.091 0.015
ENSG00000134313 E061 92.1213750 0.0134576100 5.160558e-03 3.545950e-02 2 8786206 8786357 152 - 1.873 1.861 -0.042
ENSG00000134313 E062 0.0000000       2 8788007 8788646 640 -      
ENSG00000134313 E063 87.6251771 0.0087670726 2.005256e-05 3.828857e-04 2 8788647 8788812 166 - 1.867 1.764 -0.347
ENSG00000134313 E064 0.0000000       2 8789405 8789879 475 -      
ENSG00000134313 E065 68.0122542 0.0062537725 8.965200e-07 2.582254e-05 2 8789880 8789983 104 - 1.766 1.617 -0.506
ENSG00000134313 E066 61.2821927 0.0009080568 2.708517e-05 4.937934e-04 2 8789984 8790059 76 - 1.711 1.651 -0.204
ENSG00000134313 E067 0.0000000       2 8790966 8791019 54 -      
ENSG00000134313 E068 0.0000000       2 8791020 8791059 40 -      
ENSG00000134313 E069 79.2586958 0.0012270114 7.664569e-05 1.196892e-03 2 8791060 8791224 165 - 1.814 1.792 -0.074
ENSG00000134313 E070 85.2311693 0.0126899880 4.112755e-03 2.979694e-02 2 8793810 8793987 178 - 1.842 1.814 -0.096
ENSG00000134313 E071 0.1614157 0.0335983469 1.000000e+00   2 8793988 8794316 329 - 0.063 0.000 -10.734
ENSG00000134313 E072 83.8145857 0.0367747224 4.330162e-03 3.098997e-02 2 8796771 8796869 99 - 1.850 1.723 -0.428
ENSG00000134313 E073 1.5469005 0.1678572288 6.658072e-01 8.135477e-01 2 8797752 8798201 450 - 0.291 0.481 1.089
ENSG00000134313 E074 87.4625726 0.0253691548 1.751481e-03 1.537988e-02 2 8798202 8798300 99 - 1.866 1.760 -0.359
ENSG00000134313 E075 0.0000000       2 8800207 8800399 193 -      
ENSG00000134313 E076 104.1954082 0.0299485172 4.701394e-03 3.301103e-02 2 8800400 8800498 99 - 1.938 1.849 -0.300
ENSG00000134313 E077 120.5038229 0.0299465340 1.413343e-03 1.299450e-02 2 8802930 8803127 198 - 2.004 1.904 -0.336
ENSG00000134313 E078 82.7622887 0.0280332805 3.908350e-03 2.864045e-02 2 8806271 8806369 99 - 1.840 1.761 -0.265
ENSG00000134313 E079 0.0000000       2 8806370 8806378 9 -      
ENSG00000134313 E080 0.0000000       2 8806581 8806643 63 -      
ENSG00000134313 E081 75.9144813 0.0376846834 3.051217e-03 2.372125e-02 2 8812395 8812493 99 - 1.810 1.682 -0.435
ENSG00000134313 E082 11.4351532 0.0501298823 5.812007e-03 3.880529e-02 2 8812494 8812496 3 - 1.046 0.750 -1.131
ENSG00000134313 E083 0.0000000       2 8812497 8813236 740 -      
ENSG00000134313 E084 90.6663314 0.0350693149 1.281150e-03 1.201905e-02 2 8813237 8813335 99 - 1.888 1.748 -0.472
ENSG00000134313 E085 101.3551462 0.0224262310 5.055027e-04 5.729942e-03 2 8817618 8817716 99 - 1.931 1.821 -0.369
ENSG00000134313 E086 95.8203838 0.0223631671 1.367725e-04 1.942716e-03 2 8818695 8818793 99 - 1.912 1.770 -0.478
ENSG00000134313 E087 0.3337900 0.0526860961 4.434993e-01   2 8824059 8825742 1684 - 0.063 0.221 2.079
ENSG00000134313 E088 0.3088520 0.0294347359 4.535994e-01   2 8825743 8825913 171 - 0.063 0.220 2.073
ENSG00000134313 E089 0.3447487 0.9281684001 1.693670e-01   2 8826702 8826985 284 - 0.000 0.374 15.891
ENSG00000134313 E090 72.9652176 0.0181156128 5.646322e-04 6.261838e-03 2 8826986 8827129 144 - 1.789 1.684 -0.356
ENSG00000134313 E091 0.5963342 0.0192676935 1.000000e+00   2 8837469 8837479 11 - 0.168 0.221 0.491
ENSG00000134313 E092 34.2313834 0.0379845642 4.601717e-02 1.700934e-01 2 8837480 8837630 151 - 1.460 1.419 -0.140