ENSG00000133612

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000397238 ENSG00000133612 HEK293_OSMI2_6hA HEK293_TMG_6hB AGAP3 protein_coding protein_coding 100.6015 156.1488 62.68411 24.02089 2.121533 -1.316612 8.844760 12.582106 0.6554988 3.001605 0.1129966 -4.241940 0.09310833 0.07823333 0.01053333 -0.06770000 7.282432e-10 3.658047e-22 FALSE TRUE
ENST00000473312 ENSG00000133612 HEK293_OSMI2_6hA HEK293_TMG_6hB AGAP3 protein_coding protein_coding 100.6015 156.1488 62.68411 24.02089 2.121533 -1.316612 13.771999 23.234485 7.0549038 6.334127 1.2011975 -1.718147 0.13405833 0.14246667 0.11296667 -0.02950000 8.239581e-01 3.658047e-22 FALSE TRUE
ENST00000492234 ENSG00000133612 HEK293_OSMI2_6hA HEK293_TMG_6hB AGAP3 protein_coding processed_transcript 100.6015 156.1488 62.68411 24.02089 2.121533 -1.316612 3.942897 2.176178 9.2077827 2.176178 1.5506237 2.076009 0.05268333 0.01343333 0.14560000 0.13216667 9.458414e-02 3.658047e-22   FALSE
ENST00000622464 ENSG00000133612 HEK293_OSMI2_6hA HEK293_TMG_6hB AGAP3 protein_coding protein_coding 100.6015 156.1488 62.68411 24.02089 2.121533 -1.316612 10.590282 21.916253 10.4006681 2.027322 0.7149611 -1.074597 0.09710417 0.14353333 0.16706667 0.02353333 8.211338e-01 3.658047e-22 FALSE TRUE
MSTRG.30937.9 ENSG00000133612 HEK293_OSMI2_6hA HEK293_TMG_6hB AGAP3 protein_coding   100.6015 156.1488 62.68411 24.02089 2.121533 -1.316612 21.177752 36.808193 9.5649705 6.942128 0.6344060 -1.943079 0.20715000 0.23280000 0.15280000 -0.08000000 4.121278e-02 3.658047e-22 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000133612 E001 1.0462052 0.0326580181 6.481154e-01   7 151085831 151085866 36 + 0.209 0.302 0.707
ENSG00000133612 E002 1.1888398 0.0190281371 8.111142e-01   7 151085867 151085878 12 + 0.349 0.303 -0.288
ENSG00000133612 E003 13.8983935 0.0571808448 9.819625e-01 9.927759e-01 7 151085879 151085958 80 + 1.102 1.091 -0.038
ENSG00000133612 E004 16.3324685 0.0476949938 9.466741e-01 9.756347e-01 7 151085959 151086009 51 + 1.161 1.157 -0.014
ENSG00000133612 E005 16.0777468 0.0425017231 8.865222e-01 9.448638e-01 7 151086010 151086060 51 + 1.143 1.152 0.032
ENSG00000133612 E006 16.3967276 0.0128074184 6.008177e-04 6.584452e-03 7 151086475 151086490 16 + 0.773 1.238 1.725
ENSG00000133612 E007 33.2486306 0.0239207901 1.295661e-05 2.627261e-04 7 151086491 151086539 49 + 0.982 1.530 1.938
ENSG00000133612 E008 56.0919796 0.0145164772 1.063827e-03 1.040262e-02 7 151086540 151086692 153 + 1.428 1.727 1.018
ENSG00000133612 E009 21.1548953 0.0016804751 1.167863e-01 3.104485e-01 7 151086693 151086704 12 + 1.365 1.231 -0.468
ENSG00000133612 E010 27.3115772 0.0033089160 1.231960e-01 3.208200e-01 7 151086705 151086716 12 + 1.459 1.335 -0.429
ENSG00000133612 E011 27.9374634 0.0038807180 1.254849e-01 3.245987e-01 7 151086717 151086741 25 + 1.468 1.345 -0.427
ENSG00000133612 E012 27.9374634 0.0038807180 1.254849e-01 3.245987e-01 7 151086742 151086753 12 + 1.468 1.345 -0.427
ENSG00000133612 E013 27.6887110 0.0074561139 2.299692e-01 4.651342e-01 7 151086754 151086786 33 + 1.450 1.345 -0.363
ENSG00000133612 E014 77.3192581 0.0006376218 2.407597e-03 1.973289e-02 7 151086787 151086894 108 + 1.680 1.839 0.538
ENSG00000133612 E015 101.5192642 0.0004023908 3.334030e-03 2.538991e-02 7 151086895 151086918 24 + 1.822 1.953 0.443
ENSG00000133612 E016 96.0033645 0.0005194957 1.724030e-01 3.937333e-01 7 151086919 151086921 3 + 1.856 1.916 0.202
ENSG00000133612 E017 470.1643248 0.0001851736 4.900210e-05 8.177528e-04 7 151086922 151087066 145 + 2.652 2.571 -0.269
ENSG00000133612 E018 328.6688919 0.0001998893 1.790956e-07 6.252991e-06 7 151087067 151087072 6 + 2.527 2.406 -0.403
ENSG00000133612 E019 0.3447487 0.6663907313 1.000000e+00   7 151087073 151087204 132 + 0.000 0.129 9.572
ENSG00000133612 E020 5.9165744 0.3347430794 4.593259e-01 6.727101e-01 7 151089712 151090165 454 + 0.861 0.732 -0.511
ENSG00000133612 E021 0.2922838 0.0256859535 3.465465e-01   7 151090493 151090547 55 + 0.208 0.068 -1.870
ENSG00000133612 E022 0.3447487 0.6663907313 1.000000e+00   7 151112184 151112244 61 + 0.000 0.129 9.572
ENSG00000133612 E023 4.9103286 0.0069228789 1.988770e-02 9.547388e-02 7 151114678 151115437 760 + 0.349 0.782 2.034
ENSG00000133612 E024 1.1428216 0.0141684843 1.333248e-01   7 151115438 151115532 95 + 0.000 0.339 12.883
ENSG00000133612 E025 7.9315989 0.0049630332 4.111358e-02 1.576506e-01 7 151115533 151115641 109 + 0.611 0.926 1.269
ENSG00000133612 E026 4.8429672 0.0904415487 8.523705e-01 9.263839e-01 7 151116307 151116650 344 + 0.728 0.687 -0.170
ENSG00000133612 E027 552.8435688 0.0005739578 6.965418e-06 1.532239e-04 7 151116793 151116851 59 + 2.731 2.635 -0.318
ENSG00000133612 E028 704.9326814 0.0005412122 3.644542e-05 6.370184e-04 7 151117095 151117182 88 + 2.826 2.745 -0.268
ENSG00000133612 E029 422.8307180 0.0001730918 2.327903e-02 1.068258e-01 7 151117371 151117391 21 + 2.581 2.532 -0.162
ENSG00000133612 E030 539.1650620 0.0003552813 7.930412e-02 2.434326e-01 7 151117392 151117456 65 + 2.677 2.639 -0.125
ENSG00000133612 E031 656.1137975 0.0015094814 7.027665e-02 2.253210e-01 7 151117636 151117753 118 + 2.768 2.721 -0.156
ENSG00000133612 E032 402.7769763 0.0003644534 6.118855e-04 6.684178e-03 7 151117754 151117777 24 + 2.582 2.505 -0.257
ENSG00000133612 E033 18.0201267 0.1364010912 2.328033e-01 4.683840e-01 7 151117778 151118162 385 + 1.351 1.146 -0.724
ENSG00000133612 E034 6.0558900 0.0546950691 3.700626e-01 6.040130e-01 7 151118209 151118209 1 + 0.894 0.731 -0.639
ENSG00000133612 E035 554.6453796 0.0001575234 1.152343e-02 6.448772e-02 7 151118210 151118267 58 + 2.698 2.651 -0.158
ENSG00000133612 E036 427.2473454 0.0001575256 1.160444e-02 6.482358e-02 7 151118268 151118293 26 + 2.589 2.536 -0.177
ENSG00000133612 E037 452.8301576 0.0001776935 2.509624e-01 4.890269e-01 7 151118294 151118344 51 + 2.593 2.568 -0.081
ENSG00000133612 E038 8.1160779 0.0787341650 8.656268e-04 8.815793e-03 7 151118345 151118473 129 + 1.250 0.689 -2.112
ENSG00000133612 E039 12.4952024 0.0026888228 1.765251e-01 3.991429e-01 7 151118474 151118504 31 + 1.163 1.019 -0.521
ENSG00000133612 E040 580.7552336 0.0008798869 2.266029e-01 4.613310e-01 7 151118505 151118632 128 + 2.660 2.685 0.084
ENSG00000133612 E041 2.0569412 0.0196522942 4.574036e-01 6.713654e-01 7 151119160 151119196 37 + 0.540 0.401 -0.699
ENSG00000133612 E042 2.9385944 0.0168763964 3.180021e-01 5.579279e-01 7 151119197 151119254 58 + 0.672 0.503 -0.762
ENSG00000133612 E043 350.9504261 0.0003008536 2.978278e-01 5.382841e-01 7 151119987 151120015 29 + 2.484 2.458 -0.085
ENSG00000133612 E044 470.1529161 0.0001185375 2.731318e-01 5.130015e-01 7 151120016 151120070 55 + 2.608 2.586 -0.075
ENSG00000133612 E045 520.7721541 0.0005427673 2.557392e-01 4.944366e-01 7 151120071 151120145 75 + 2.654 2.629 -0.084
ENSG00000133612 E046 42.0426345 0.0021743126 3.092274e-11 2.439105e-09 7 151120520 151120567 48 + 1.830 1.435 -1.343
ENSG00000133612 E047 69.9136023 0.0079673764 7.225211e-11 5.259353e-09 7 151120568 151120745 178 + 2.044 1.649 -1.332
ENSG00000133612 E048 9.2197832 0.0129937002 3.034173e-10 1.940032e-08 7 151120746 151121033 288 + 1.377 0.642 -2.754
ENSG00000133612 E049 604.1824539 0.0175750284 1.872947e-01 4.134493e-01 7 151122725 151123621 897 + 2.752 2.678 -0.249
ENSG00000133612 E050 31.5094937 0.0015226508 1.467167e-07 5.237728e-06 7 151123622 151123793 172 + 1.680 1.327 -1.210
ENSG00000133612 E051 330.2374835 0.0001753968 1.254949e-02 6.863741e-02 7 151123794 151123886 93 + 2.389 2.450 0.201
ENSG00000133612 E052 3.3548290 0.1489531224 7.908932e-01 8.910167e-01 7 151128333 151128576 244 + 0.611 0.555 -0.253
ENSG00000133612 E053 1.3983512 0.0368607492 4.407145e-01 6.592512e-01 7 151128577 151128579 3 + 0.453 0.304 -0.863
ENSG00000133612 E054 208.7869603 0.0004730878 5.214359e-02 1.847364e-01 7 151128580 151128595 16 + 2.192 2.253 0.204
ENSG00000133612 E055 381.2208878 0.0001456136 2.245690e-02 1.041027e-01 7 151128596 151128684 89 + 2.460 2.510 0.169
ENSG00000133612 E056 14.2982486 0.0022327404 4.161591e-01 6.407308e-01 7 151131072 151131286 215 + 1.036 1.124 0.321
ENSG00000133612 E057 213.2121530 0.0020013888 9.446118e-01 9.746432e-01 7 151134400 151134424 25 + 2.250 2.243 -0.021
ENSG00000133612 E058 301.6829597 0.0002400680 9.176442e-02 2.669495e-01 7 151134425 151134481 57 + 2.363 2.405 0.139
ENSG00000133612 E059 358.1460211 0.0002105586 2.640589e-04 3.364893e-03 7 151134482 151134568 87 + 2.404 2.491 0.288
ENSG00000133612 E060 47.2989110 0.0473608427 9.258882e-02 2.685656e-01 7 151136226 151136560 335 + 1.753 1.547 -0.700
ENSG00000133612 E061 53.9587011 0.0790092976 1.751209e-01 3.973168e-01 7 151137730 151138142 413 + 1.799 1.605 -0.660
ENSG00000133612 E062 210.0442779 0.0057525965 9.787090e-02 2.780608e-01 7 151138143 151138313 171 + 2.181 2.254 0.242
ENSG00000133612 E063 32.7355339 0.1103352380 4.174433e-01 6.416900e-01 7 151139568 151139978 411 + 1.540 1.412 -0.438
ENSG00000133612 E064 280.4406653 0.0006409945 1.658278e-02 8.391352e-02 7 151139979 151140116 138 + 2.313 2.379 0.219
ENSG00000133612 E065 62.3054798 0.0781762013 1.702422e-01 3.907532e-01 7 151140117 151140718 602 + 1.865 1.663 -0.685
ENSG00000133612 E066 57.5755910 0.0417274541 1.428047e-01 3.516498e-01 7 151140719 151140876 158 + 1.812 1.639 -0.585
ENSG00000133612 E067 96.4472224 0.0914827904 3.438028e-01 5.814569e-01 7 151140877 151141897 1021 + 2.002 1.870 -0.444
ENSG00000133612 E068 617.6353668 0.0001237668 5.464943e-06 1.245401e-04 7 151141898 151142052 155 + 2.644 2.725 0.270
ENSG00000133612 E069 489.1449146 0.0001559593 1.066810e-04 1.579089e-03 7 151142163 151142253 91 + 2.546 2.624 0.259
ENSG00000133612 E070 785.0619656 0.0009591436 5.218786e-08 2.072176e-06 7 151142412 151142634 223 + 2.720 2.831 0.367
ENSG00000133612 E071 831.5685048 0.0010984375 9.073173e-12 7.861395e-10 7 151143341 151143596 256 + 2.717 2.860 0.478
ENSG00000133612 E072 1256.7466227 0.0003793788 4.850069e-10 2.991839e-08 7 151143737 151144496 760 + 2.943 3.033 0.298