ENSG00000131844

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000340941 ENSG00000131844 HEK293_OSMI2_6hA HEK293_TMG_6hB MCCC2 protein_coding protein_coding 52.37793 53.78516 49.5379 10.96852 2.429446 -0.1186526 26.487009 27.096541 30.032348 3.639606 1.9217527 0.1483565 0.51265000 0.5230333 0.60870000 0.08566667 7.459661e-01 4.469508e-16 FALSE TRUE
ENST00000682045 ENSG00000131844 HEK293_OSMI2_6hA HEK293_TMG_6hB MCCC2 protein_coding protein_coding 52.37793 53.78516 49.5379 10.96852 2.429446 -0.1186526 2.075445 1.534037 3.884057 1.534037 2.7985318 1.3345669 0.03904583 0.0215000 0.07416667 0.05266667 6.593763e-01 4.469508e-16 FALSE TRUE
ENST00000682231 ENSG00000131844 HEK293_OSMI2_6hA HEK293_TMG_6hB MCCC2 protein_coding processed_transcript 52.37793 53.78516 49.5379 10.96852 2.429446 -0.1186526 7.149892 10.103297 0.000000 3.972005 0.0000000 -9.9820377 0.12685000 0.1711667 0.00000000 -0.17116667 4.469508e-16 4.469508e-16 FALSE TRUE
ENST00000683789 ENSG00000131844 HEK293_OSMI2_6hA HEK293_TMG_6hB MCCC2 protein_coding protein_coding 52.37793 53.78516 49.5379 10.96852 2.429446 -0.1186526 9.980223 10.661855 10.818157 2.168846 0.2975479 0.0209767 0.19163333 0.1989667 0.21943333 0.02046667 8.273159e-01 4.469508e-16 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000131844 E001 1.1595774 0.0233754256 7.466321e-02   5 71579531 71580217 687 + 0.126 0.457 2.475
ENSG00000131844 E002 2.3838366 0.3385965422 3.146325e-01 5.548223e-01 5 71580218 71581043 826 + 0.365 0.657 1.424
ENSG00000131844 E003 2.0236173 0.0106310043 8.555392e-02 2.556090e-01 5 71582450 71582573 124 + 0.302 0.613 1.627
ENSG00000131844 E004 0.0000000       5 71582951 71583018 68 +      
ENSG00000131844 E005 0.0000000       5 71583822 71583951 130 +      
ENSG00000131844 E006 0.1308682 0.0309053724 5.466189e-01   5 71584033 71584166 134 + 0.000 0.117 11.541
ENSG00000131844 E007 0.2922838 0.0268278063 9.195305e-01   5 71586745 71586786 42 + 0.126 0.117 -0.112
ENSG00000131844 E008 1.0018026 0.0196058980 8.690039e-01   5 71586787 71586850 64 + 0.302 0.286 -0.106
ENSG00000131844 E009 0.1308682 0.0309053724 5.466189e-01   5 71587265 71587275 11 + 0.000 0.117 11.541
ENSG00000131844 E010 0.3336024 0.0244411696 2.391630e-01   5 71587276 71587277 2 + 0.000 0.210 12.637
ENSG00000131844 E011 0.3336024 0.0244411696 2.391630e-01   5 71587278 71587279 2 + 0.000 0.210 12.637
ENSG00000131844 E012 0.3336024 0.0244411696 2.391630e-01   5 71587280 71587287 8 + 0.000 0.210 12.637
ENSG00000131844 E013 0.9465047 0.0156061543 8.644580e-01   5 71587288 71587293 6 + 0.302 0.286 -0.111
ENSG00000131844 E014 2.2662804 0.0100053089 4.430536e-01 6.607689e-01 5 71587294 71587295 2 + 0.566 0.457 -0.524
ENSG00000131844 E015 2.3971486 0.0094219751 6.114643e-01 7.778757e-01 5 71587296 71587297 2 + 0.566 0.502 -0.302
ENSG00000131844 E016 3.0811092 0.0078457005 9.493414e-01 9.767595e-01 5 71587298 71587302 5 + 0.604 0.613 0.042
ENSG00000131844 E017 3.0811092 0.0078457005 9.493414e-01 9.767595e-01 5 71587303 71587303 1 + 0.604 0.613 0.042
ENSG00000131844 E018 3.5878937 0.0068415314 7.578382e-01 8.712908e-01 5 71587304 71587305 2 + 0.671 0.645 -0.109
ENSG00000131844 E019 4.3564146 0.0055850459 8.748600e-01 9.386811e-01 5 71587306 71587308 3 + 0.729 0.728 -0.002
ENSG00000131844 E020 13.7276622 0.0399954240 9.777189e-01 9.906634e-01 5 71587309 71587316 8 + 1.161 1.173 0.041
ENSG00000131844 E021 28.2142781 0.0141849885 6.619959e-01 8.110914e-01 5 71587317 71587333 17 + 1.434 1.498 0.218
ENSG00000131844 E022 31.3173772 0.0235031661 7.396873e-01 8.602181e-01 5 71587334 71587339 6 + 1.481 1.537 0.190
ENSG00000131844 E023 41.3762291 0.0208194488 1.895986e-01 4.164336e-01 5 71587340 71587355 16 + 1.550 1.693 0.487
ENSG00000131844 E024 53.5794216 0.0213110963 1.344079e-01 3.387384e-01 5 71587356 71587369 14 + 1.651 1.804 0.521
ENSG00000131844 E025 97.2312319 0.0141038238 5.815975e-02 1.986457e-01 5 71587370 71587442 73 + 1.904 2.059 0.520
ENSG00000131844 E026 163.8850211 0.0013840443 3.842877e-01 6.158547e-01 5 71587443 71587554 112 + 2.188 2.243 0.181
ENSG00000131844 E027 0.0000000       5 71592871 71592925 55 +      
ENSG00000131844 E028 215.1961306 0.0002669286 1.445554e-02 7.608264e-02 5 71592926 71592992 67 + 2.352 2.318 -0.113
ENSG00000131844 E029 277.0154670 0.0019106882 5.940307e-06 1.337744e-04 5 71596280 71596364 85 + 2.498 2.388 -0.366
ENSG00000131844 E030 292.7397809 0.0014067402 3.651610e-07 1.172485e-05 5 71599659 71599760 102 + 2.522 2.409 -0.377
ENSG00000131844 E031 134.1639595 0.0003409325 3.506634e-06 8.499960e-05 5 71602506 71602510 5 + 2.186 2.068 -0.395
ENSG00000131844 E032 317.2862823 0.0015161603 2.038095e-03 1.731617e-02 5 71602511 71602633 123 + 2.529 2.473 -0.188
ENSG00000131844 E033 0.0000000       5 71602634 71603065 432 +      
ENSG00000131844 E034 294.6370744 0.0009162925 6.110724e-04 6.677873e-03 5 71604356 71604468 113 + 2.499 2.441 -0.194
ENSG00000131844 E035 248.2192729 0.0003384682 5.833715e-03 3.891962e-02 5 71626640 71626753 114 + 2.417 2.378 -0.128
ENSG00000131844 E036 0.5255656 0.2551661767 5.687400e-01   5 71631151 71631279 129 + 0.223 0.119 -1.087
ENSG00000131844 E037 1.1960943 0.0363190259 7.575595e-02   5 71631539 71632120 582 + 0.125 0.459 2.486
ENSG00000131844 E038 292.0181895 0.0001999395 3.097385e-02 1.302643e-01 5 71632121 71632185 65 + 2.476 2.457 -0.064
ENSG00000131844 E039 5.7369957 0.0053011981 4.422502e-02 1.656808e-01 5 71633138 71634942 1805 + 0.940 0.702 -0.932
ENSG00000131844 E040 195.1463236 0.0002378233 4.012558e-01 6.293462e-01 5 71634943 71634952 10 + 2.288 2.293 0.016
ENSG00000131844 E041 339.4824669 0.0002175915 1.560676e-02 8.038542e-02 5 71634953 71635042 90 + 2.540 2.519 -0.072
ENSG00000131844 E042 389.8613882 0.0001586780 1.625213e-06 4.348490e-05 5 71635151 71635246 96 + 2.621 2.560 -0.203
ENSG00000131844 E043 3.7496847 0.1121160646 3.238559e-01 5.631611e-01 5 71635247 71636103 857 + 0.756 0.582 -0.740
ENSG00000131844 E044 4.5656972 0.1018010159 4.707775e-01 6.806632e-01 5 71636104 71636167 64 + 0.806 0.675 -0.530
ENSG00000131844 E045 0.7860845 0.0170134972 1.181173e-02   5 71636168 71636711 544 + 0.427 0.000 -14.956
ENSG00000131844 E046 1.5927310 0.0304469200 1.513547e-01 3.643090e-01 5 71639622 71639811 190 + 0.525 0.285 -1.340
ENSG00000131844 E047 1.1362551 0.0141880654 1.894187e-01   5 71639812 71639851 40 + 0.427 0.210 -1.431
ENSG00000131844 E048 2.0096061 0.0777466796 2.000623e-02 9.590463e-02 5 71639852 71640009 158 + 0.642 0.210 -2.445
ENSG00000131844 E049 1.9021305 0.0412462020 4.602528e-01 6.732886e-01 5 71640010 71640384 375 + 0.525 0.407 -0.598
ENSG00000131844 E050 0.5470056 0.2881535290 8.968659e-01   5 71640385 71640415 31 + 0.220 0.204 -0.132
ENSG00000131844 E051 0.7603386 0.0869866884 5.525736e-01   5 71640416 71640544 129 + 0.303 0.208 -0.715
ENSG00000131844 E052 0.5283420 0.4113191511 6.264775e-01   5 71640545 71640561 17 + 0.227 0.119 -1.130
ENSG00000131844 E053 1.6107042 0.3024235518 9.287828e-01 9.664452e-01 5 71640562 71640704 143 + 0.436 0.399 -0.200
ENSG00000131844 E054 3.7245590 0.0069900982 3.542077e-01 5.910236e-01 5 71640705 71641002 298 + 0.729 0.613 -0.488
ENSG00000131844 E055 370.9463988 0.0002397859 2.866062e-04 3.595707e-03 5 71641003 71641075 73 + 2.591 2.548 -0.143
ENSG00000131844 E056 5.3582669 0.0057741732 4.261823e-01 6.481547e-01 5 71641076 71641083 8 + 0.729 0.858 0.510
ENSG00000131844 E057 14.7850902 0.0041355337 4.639291e-02 1.710096e-01 5 71641084 71641195 112 + 1.266 1.108 -0.561
ENSG00000131844 E058 42.4190750 0.0872205104 1.344690e-01 3.388321e-01 5 71641196 71642663 1468 + 1.728 1.532 -0.667
ENSG00000131844 E059 5.7413494 0.0152156474 7.289019e-01 8.535377e-01 5 71642664 71642727 64 + 0.847 0.819 -0.108
ENSG00000131844 E060 1.4742266 0.2832049615 9.027446e-01 9.532186e-01 5 71643043 71643062 20 + 0.375 0.404 0.160
ENSG00000131844 E061 16.7394432 0.0680200560 1.803702e-01 4.044659e-01 5 71643063 71643770 708 + 1.331 1.145 -0.658
ENSG00000131844 E062 5.3680466 0.0052034009 2.986718e-03 2.331909e-02 5 71643771 71643818 48 + 0.956 0.579 -1.525
ENSG00000131844 E063 205.0794733 0.0002801259 8.565856e-01 9.285898e-01 5 71643819 71643845 27 + 2.298 2.321 0.075
ENSG00000131844 E064 234.1244741 0.0060467629 4.877690e-01 6.924928e-01 5 71643846 71643895 50 + 2.367 2.373 0.021
ENSG00000131844 E065 12.7137843 0.0605750343 3.725760e-01 6.061136e-01 5 71643896 71646210 2315 + 1.191 1.076 -0.412
ENSG00000131844 E066 200.0513358 0.0016994581 2.631631e-01 5.023797e-01 5 71646211 71646223 13 + 2.303 2.299 -0.016
ENSG00000131844 E067 285.7154962 0.0032581583 4.373178e-01 6.567037e-01 5 71646224 71646277 54 + 2.451 2.459 0.028
ENSG00000131844 E068 0.8709345 0.1351255718 5.900373e-01   5 71649070 71649096 27 + 0.302 0.213 -0.662
ENSG00000131844 E069 455.6423486 0.0006696228 3.934228e-01 6.230916e-01 5 71649097 71649253 157 + 2.632 2.677 0.151
ENSG00000131844 E070 0.1723744 0.0472807357 5.443456e-01   5 71649254 71649296 43 + 0.000 0.118 11.367
ENSG00000131844 E071 0.1723744 0.0472807357 5.443456e-01   5 71649297 71649348 52 + 0.000 0.118 11.367
ENSG00000131844 E072 2.2210023 0.0095440740 4.248222e-01 6.471468e-01 5 71649349 71650068 720 + 0.427 0.579 0.738
ENSG00000131844 E073 403.7470749 0.0002676560 9.812490e-02 2.784923e-01 5 71650069 71650183 115 + 2.573 2.631 0.193
ENSG00000131844 E074 1.3169137 0.1664064389 1.755588e-02   5 71650184 71650352 169 + 0.000 0.514 13.743
ENSG00000131844 E075 1.4977596 0.3150141605 3.622070e-01 5.975067e-01 5 71650353 71651234 882 + 0.481 0.290 -1.095
ENSG00000131844 E076 1.2255443 0.1169935822 6.262628e-01   5 71651235 71651509 275 + 0.301 0.406 0.630
ENSG00000131844 E077 1.3271501 0.1526184167 2.711275e-01   5 71651510 71651927 418 + 0.222 0.461 1.501
ENSG00000131844 E078 1.1547758 0.0423243145 3.387870e-01   5 71651928 71651992 65 + 0.223 0.408 1.220
ENSG00000131844 E079 3.9515433 0.0232168597 3.287599e-01 5.677491e-01 5 71651993 71652668 676 + 0.604 0.774 0.712
ENSG00000131844 E080 340.2363739 0.0002327767 2.900928e-02 1.243755e-01 5 71652669 71652754 86 + 2.491 2.562 0.236
ENSG00000131844 E081 2.8661989 0.0110479536 3.317520e-02 1.365102e-01 5 71652755 71653850 1096 + 0.729 0.407 -1.489
ENSG00000131844 E082 2474.5266053 0.0014588886 9.107279e-12 7.886922e-10 5 71656743 71658706 1964 + 3.317 3.451 0.447