ENSG00000131051

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000361162 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding protein_coding 135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 26.619518 9.856950 38.89974 1.8227867 4.4420019 1.979455 0.19921667 0.2074 0.16496667 -0.04243333 8.595890e-01 9.509008e-21 FALSE  
ENST00000461283 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding retained_intron 135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 13.047696 6.892300 23.41858 0.1911311 2.1040555 1.763120 0.11847917 0.1447 0.09906667 -0.04563333 2.378791e-01 9.509008e-21 FALSE  
ENST00000463004 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding retained_intron 135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 8.656293 2.337549 18.92168 0.6765472 0.7642357 3.011575 0.05456250 0.0472 0.08060000 0.03340000 4.412557e-01 9.509008e-21 FALSE  
ENST00000494274 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding processed_transcript 135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 6.415427 0.000000 17.27655 0.0000000 2.7137181 10.755435 0.03078333 0.0000 0.07270000 0.07270000 9.509008e-21 9.509008e-21 FALSE  
ENST00000528062 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding protein_coding 135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 8.434504 3.220224 15.13909 0.6691989 0.8736908 2.229525 0.06362083 0.0694 0.06440000 -0.00500000 1.000000e+00 9.509008e-21 FALSE  
MSTRG.20649.12 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding   135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 8.835073 4.493582 10.75820 0.8322248 7.6080947 1.257633 0.06597083 0.0916 0.04476667 -0.04683333 7.588482e-01 9.509008e-21 TRUE  
MSTRG.20649.21 ENSG00000131051 HEK293_OSMI2_6hA HEK293_TMG_6hB RBM39 protein_coding   135.8883 48.20417 235.7512 3.591431 7.407275 2.289797 3.987191 0.000000 15.23086 0.0000000 7.8063180 10.573729 0.01872083 0.0000 0.06563333 0.06563333 4.283174e-01 9.509008e-21 TRUE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000131051 E001 3.2575157 4.739679e-02 7.272993e-01 8.526193e-01 20 35701347 35703223 1877 - 0.547 0.613 0.295
ENSG00000131051 E002 1.3224211 1.361579e-02 2.993483e-01   20 35703224 35703608 385 - 0.264 0.458 1.159
ENSG00000131051 E003 0.4762370 2.176816e-02 9.188200e-02   20 35703609 35703609 1 - 0.067 0.351 2.895
ENSG00000131051 E004 3.2129958 7.869237e-03 4.874705e-01 6.922755e-01 20 35703610 35703610 1 - 0.585 0.457 -0.607
ENSG00000131051 E005 344.3330128 2.474736e-03 1.613206e-05 3.179291e-04 20 35703611 35703897 287 - 2.421 2.557 0.455
ENSG00000131051 E006 671.6762724 1.127289e-02 3.291839e-02 1.358419e-01 20 35703898 35704325 428 - 2.717 2.826 0.361
ENSG00000131051 E007 154.2489510 8.728348e-04 4.697063e-02 1.724951e-01 20 35704326 35704327 2 - 2.089 2.161 0.238
ENSG00000131051 E008 190.4550394 3.490541e-03 4.464387e-02 1.667155e-01 20 35704328 35704376 49 - 2.179 2.258 0.266
ENSG00000131051 E009 208.2734326 8.059478e-03 2.241972e-01 4.584007e-01 20 35704377 35704399 23 - 2.223 2.281 0.194
ENSG00000131051 E010 165.3376506 4.625585e-03 5.204639e-02 1.845127e-01 20 35704400 35704404 5 - 2.116 2.202 0.286
ENSG00000131051 E011 616.6977250 1.559226e-03 6.558903e-06 1.458113e-04 20 35704405 35704581 177 - 2.681 2.790 0.364
ENSG00000131051 E012 390.2123321 1.338274e-03 9.219878e-07 2.646185e-05 20 35704668 35704702 35 - 2.478 2.608 0.434
ENSG00000131051 E013 395.1499902 5.059239e-04 1.856161e-07 6.450150e-06 20 35704703 35704746 44 - 2.487 2.606 0.398
ENSG00000131051 E014 15.0177625 1.507686e-02 2.069774e-01 4.381602e-01 20 35704747 35705224 478 - 1.093 1.234 0.501
ENSG00000131051 E015 435.9530833 1.450288e-04 1.513084e-08 6.815819e-07 20 35705225 35705261 37 - 2.530 2.644 0.381
ENSG00000131051 E016 650.2611636 4.774790e-04 5.289951e-02 1.864852e-01 20 35705262 35705330 69 - 2.723 2.761 0.127
ENSG00000131051 E017 2.8931621 7.953256e-03 2.445369e-01 4.817017e-01 20 35705331 35705399 69 - 0.478 0.675 0.894
ENSG00000131051 E018 488.7388233 5.244589e-04 1.064849e-01 2.931328e-01 20 35707120 35707135 16 - 2.615 2.580 -0.117
ENSG00000131051 E019 555.2930232 2.515506e-04 5.827050e-01 7.588297e-01 20 35707136 35707201 66 - 2.660 2.672 0.039
ENSG00000131051 E020 79.2608039 5.543777e-04 2.765254e-04 3.493815e-03 20 35707202 35707939 738 - 1.857 1.667 -0.644
ENSG00000131051 E021 14.4532551 5.558385e-03 6.367698e-04 6.896600e-03 20 35707940 35707992 53 - 1.182 0.728 -1.706
ENSG00000131051 E022 34.1232873 9.432116e-02 3.583259e-01 5.944899e-01 20 35708804 35708991 188 - 1.485 1.368 -0.402
ENSG00000131051 E023 9.1892065 9.908933e-02 5.120597e-01 7.094971e-01 20 35708992 35709032 41 - 0.906 1.021 0.426
ENSG00000131051 E024 22.0289957 7.429225e-02 3.036291e-01 5.441969e-01 20 35709033 35709223 191 - 1.306 1.170 -0.479
ENSG00000131051 E025 406.1921115 7.684597e-04 3.728099e-02 1.476864e-01 20 35709224 35709256 33 - 2.516 2.567 0.171
ENSG00000131051 E026 148.2871911 5.947833e-04 9.493856e-03 5.593128e-02 20 35709257 35709274 18 - 2.070 2.162 0.309
ENSG00000131051 E027 7.6157490 4.265968e-02 9.549317e-01 9.793665e-01 20 35709275 35709309 35 - 0.859 0.858 -0.005
ENSG00000131051 E028 21.7196055 1.531668e-03 5.605107e-02 1.937738e-01 20 35710283 35710420 138 - 1.310 1.128 -0.642
ENSG00000131051 E029 12.2647684 7.141125e-03 7.146629e-04 7.566471e-03 20 35710421 35710566 146 - 1.111 0.614 -1.935
ENSG00000131051 E030 525.9539918 2.822806e-04 4.117882e-03 2.982863e-02 20 35713019 35713096 78 - 2.626 2.683 0.190
ENSG00000131051 E031 39.6244053 3.074447e-02 2.197890e-02 1.025116e-01 20 35713097 35713293 197 - 1.461 1.716 0.868
ENSG00000131051 E032 17.6914261 2.871888e-02 1.137372e-02 6.389623e-02 20 35713294 35713317 24 - 1.113 1.412 1.052
ENSG00000131051 E033 26.8020043 2.546382e-02 8.753905e-03 5.273365e-02 20 35713318 35713407 90 - 1.287 1.568 0.972
ENSG00000131051 E034 15.8039914 6.891755e-02 1.250577e-01 3.238389e-01 20 35713408 35713415 8 - 1.081 1.324 0.862
ENSG00000131051 E035 42.4374871 8.776980e-03 5.217144e-02 1.847984e-01 20 35713702 35713831 130 - 1.520 1.670 0.512
ENSG00000131051 E036 33.8740862 2.836107e-03 2.597204e-01 4.986715e-01 20 35713832 35713857 26 - 1.439 1.523 0.287
ENSG00000131051 E037 1072.1379954 7.560289e-05 8.460728e-01 9.227401e-01 20 35714185 35714389 205 - 2.946 2.950 0.012
ENSG00000131051 E038 643.8787319 3.121246e-04 7.150875e-01 8.450227e-01 20 35716740 35716805 66 - 2.724 2.731 0.024
ENSG00000131051 E039 928.6942807 7.707822e-05 9.120433e-01 9.581679e-01 20 35721740 35721866 127 - 2.884 2.887 0.009
ENSG00000131051 E040 489.0791811 1.913624e-04 4.048242e-01 6.321710e-01 20 35721867 35721873 7 - 2.609 2.593 -0.053
ENSG00000131051 E041 458.6359902 7.082217e-04 9.726245e-01 9.882499e-01 20 35721874 35721877 4 - 2.578 2.579 0.004
ENSG00000131051 E042 761.2811190 3.063498e-04 6.604812e-02 2.162197e-01 20 35724570 35724675 106 - 2.805 2.774 -0.105
ENSG00000131051 E043 551.3091985 1.313043e-03 1.398486e-02 7.428916e-02 20 35724676 35724722 47 - 2.672 2.611 -0.206
ENSG00000131051 E044 415.7300979 6.224280e-04 2.238384e-03 1.864940e-02 20 35725038 35725064 27 - 2.552 2.477 -0.248
ENSG00000131051 E045 565.3717163 3.785763e-04 4.621130e-02 1.705512e-01 20 35725065 35725123 59 - 2.678 2.639 -0.132
ENSG00000131051 E046 482.7988442 2.428121e-04 1.579608e-02 8.107403e-02 20 35725124 35725155 32 - 2.611 2.562 -0.165
ENSG00000131051 E047 415.6735302 1.838432e-04 9.564773e-03 5.624761e-02 20 35729312 35729321 10 - 2.548 2.491 -0.187
ENSG00000131051 E048 522.3108144 2.832029e-04 8.660658e-03 5.230738e-02 20 35729322 35729362 41 - 2.647 2.594 -0.174
ENSG00000131051 E049 350.0551588 1.711011e-04 3.612277e-02 1.445481e-01 20 35729363 35729365 3 - 2.473 2.424 -0.161
ENSG00000131051 E050 376.4195758 1.641760e-04 1.909319e-01 4.180585e-01 20 35729462 35729471 10 - 2.500 2.472 -0.095
ENSG00000131051 E051 520.3372795 1.577890e-04 4.435316e-01 6.610719e-01 20 35729472 35729527 56 - 2.638 2.624 -0.046
ENSG00000131051 E052 1.8121036 1.437235e-01 4.330495e-01 6.535129e-01 20 35729528 35729551 24 - 0.367 0.536 0.872
ENSG00000131051 E053 42.1645984 9.469857e-04 4.151043e-02 1.586529e-01 20 35731360 35731915 556 - 1.520 1.649 0.437
ENSG00000131051 E054 14.1095221 2.216286e-03 4.117404e-01 6.373348e-01 20 35731916 35731940 25 - 1.081 1.167 0.308
ENSG00000131051 E055 344.6694221 1.553561e-04 6.562265e-01 8.075006e-01 20 35731941 35731945 5 - 2.458 2.448 -0.031
ENSG00000131051 E056 694.3320416 1.027162e-04 7.322049e-01 8.555669e-01 20 35731946 35732044 99 - 2.760 2.755 -0.015
ENSG00000131051 E057 455.9247882 1.465015e-04 6.213626e-01 7.847831e-01 20 35732045 35732059 15 - 2.579 2.570 -0.029
ENSG00000131051 E058 675.0483184 4.579462e-04 1.252696e-02 6.854068e-02 20 35732060 35732135 76 - 2.756 2.708 -0.159
ENSG00000131051 E059 11.4209700 2.754999e-03 7.031211e-09 3.412579e-07 20 35732136 35732806 671 - 0.814 1.391 2.097
ENSG00000131051 E060 22.3424953 1.079143e-02 9.348987e-01 9.696558e-01 20 35734186 35734257 72 - 1.286 1.280 -0.022
ENSG00000131051 E061 15.2664274 4.228460e-03 9.735514e-01 9.886882e-01 20 35734258 35734518 261 - 1.132 1.129 -0.011
ENSG00000131051 E062 13.3219420 3.285667e-02 5.059859e-02 1.810950e-01 20 35734519 35734766 248 - 1.013 1.266 0.908
ENSG00000131051 E063 5.4030858 6.312629e-03 4.169438e-01 6.413472e-01 20 35734767 35734795 29 - 0.700 0.820 0.482
ENSG00000131051 E064 10.0042048 1.438933e-02 9.668042e-02 2.759353e-01 20 35734796 35734875 80 - 0.906 1.109 0.750
ENSG00000131051 E065 21.5757428 1.779738e-03 1.131124e-03 1.089939e-02 20 35734876 35735081 206 - 1.197 1.462 0.926
ENSG00000131051 E066 1.9966222 8.709014e-02 4.884032e-02 1.768715e-01 20 35736513 35736567 55 - 0.481 0.001 -10.711
ENSG00000131051 E067 1.8012624 1.875160e-02 7.998201e-01 8.962576e-01 20 35736568 35736641 74 - 0.400 0.351 -0.280
ENSG00000131051 E068 534.1123259 1.127807e-03 1.356727e-02 7.263438e-02 20 35738968 35739017 50 - 2.657 2.595 -0.205
ENSG00000131051 E069 97.4797048 3.451524e-02 1.551558e-01 3.696553e-01 20 35739018 35739102 85 - 1.936 1.799 -0.461
ENSG00000131051 E070 127.3936147 6.797397e-02 1.652511e-01 3.842975e-01 20 35739103 35739392 290 - 2.054 1.899 -0.522
ENSG00000131051 E071 168.9082614 2.529325e-02 3.112322e-02 1.307145e-01 20 35739393 35739547 155 - 2.179 2.005 -0.582
ENSG00000131051 E072 244.1787266 2.165079e-02 1.792966e-02 8.881052e-02 20 35739548 35740098 551 - 2.338 2.164 -0.579
ENSG00000131051 E073 159.2001518 6.618207e-02 1.402768e-02 7.445475e-02 20 35740099 35740457 359 - 2.169 1.884 -0.956
ENSG00000131051 E074 91.9627442 5.652575e-02 1.586489e-03 1.422655e-02 20 35740458 35740524 67 - 1.944 1.558 -1.305
ENSG00000131051 E075 148.5170602 7.097911e-03 6.397751e-02 2.116255e-01 20 35740525 35740597 73 - 2.110 2.007 -0.346
ENSG00000131051 E076 62.2846481 8.785017e-04 1.441995e-11 1.206325e-09 20 35740598 35740823 226 - 1.783 1.320 -1.583
ENSG00000131051 E077 427.6724611 1.577750e-04 1.050520e-06 2.965960e-05 20 35740824 35740887 64 - 2.568 2.461 -0.359
ENSG00000131051 E078 0.6841482 9.585138e-02 2.314140e-01   20 35740952 35740989 38 - 0.126 0.352 1.895
ENSG00000131051 E079 1.9182372 5.955957e-02 7.557346e-04 7.906186e-03 20 35741462 35741487 26 - 0.177 0.780 3.321
ENSG00000131051 E080 3.2923153 3.952598e-02 8.570000e-06 1.835727e-04 20 35741488 35741626 139 - 0.264 0.992 3.395
ENSG00000131051 E081 520.7509323 1.977290e-04 4.358900e-03 3.114708e-02 20 35741941 35742113 173 - 2.645 2.589 -0.187
ENSG00000131051 E082 254.1667680 2.467754e-04 1.082429e-01 2.961087e-01 20 35742114 35742244 131 - 2.315 2.360 0.149
ENSG00000131051 E083 20.0527320 2.833601e-02 1.614852e-01 3.789672e-01 20 35742245 35742312 68 - 1.280 1.120 -0.568