ENSG00000130702

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000252999 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding protein_coding 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 3.8194562 5.7581386 3.0122174 0.51370944 0.02885477 -0.9324984 0.28600833 0.31416667 0.31206667 -0.002100000 1.00000000 0.01382531 FALSE TRUE
ENST00000370691 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding retained_intron 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 1.7453861 2.3402964 0.7025539 0.38708095 0.12978379 -1.7217717 0.11940833 0.13106667 0.07073333 -0.060333333 0.47558558 0.01382531 TRUE TRUE
ENST00000464134 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding retained_intron 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 0.9917597 1.2555072 1.1114986 0.95267632 0.28328680 -0.1742879 0.07529167 0.05563333 0.11190000 0.056266667 0.66821877 0.01382531 FALSE FALSE
ENST00000471042 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding retained_intron 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 1.0880488 1.4205670 0.9802933 0.77203268 0.23747437 -0.5306593 0.08055417 0.06850000 0.10413333 0.035633333 0.80090584 0.01382531   FALSE
ENST00000491036 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding retained_intron 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 0.9218238 1.0057383 0.6162442 0.03991658 0.16718667 -0.6977316 0.06764167 0.05590000 0.06446667 0.008566667 0.97048965 0.01382531   FALSE
ENST00000492698 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding processed_transcript 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 0.3826128 0.2007926 0.9192442 0.04218960 0.51446032 2.1402337 0.03121667 0.01106667 0.09003333 0.078966667 0.05929705 0.01382531   FALSE
ENST00000495695 ENSG00000130702 HEK293_OSMI2_6hA HEK293_TMG_6hB LAMA5 protein_coding retained_intron 13.96299 18.72531 9.766089 2.867038 0.7689289 -0.9384307 3.5872846 5.0227600 1.2375582 0.59250815 0.23703409 -2.0122427 0.23958750 0.27350000 0.12440000 -0.149100000 0.02399614 0.01382531 FALSE FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000130702 E001 5.9998065 0.0071928881 1.989660e-02 9.550311e-02 20 62307955 62308446 492 - 0.999 0.694 -1.184
ENSG00000130702 E002 1.8805731 0.0109492524 2.806378e-02 1.214545e-01 20 62308856 62309058 203 - 0.671 0.298 -1.901
ENSG00000130702 E003 0.8209858 0.0175665509 7.094248e-01   20 62309059 62309064 6 - 0.184 0.253 0.585
ENSG00000130702 E004 13.0795734 0.0026192284 9.908555e-01 9.971618e-01 20 62309065 62309144 80 - 1.100 1.095 -0.018
ENSG00000130702 E005 45.7294479 0.0050026548 8.029710e-03 4.944807e-02 20 62309145 62309280 136 - 1.484 1.662 0.606
ENSG00000130702 E006 83.6265035 0.0006239277 2.552162e-07 8.555384e-06 20 62309281 62309475 195 - 1.690 1.933 0.819
ENSG00000130702 E007 78.6146645 0.0018716013 2.891291e-04 3.619933e-03 20 62309716 62309835 120 - 1.713 1.893 0.608
ENSG00000130702 E008 76.3680078 0.0058985498 3.071024e-01 5.477110e-01 20 62309988 62310081 94 - 1.799 1.855 0.190
ENSG00000130702 E009 93.6303708 0.0018576125 3.763256e-01 6.092767e-01 20 62310178 62310311 134 - 1.901 1.936 0.118
ENSG00000130702 E010 10.6363384 0.0029818865 8.560427e-01 9.282833e-01 20 62310312 62310412 101 - 1.042 1.020 -0.082
ENSG00000130702 E011 62.2551222 0.0106271948 4.336591e-02 1.634945e-01 20 62310419 62310572 154 - 1.647 1.782 0.455
ENSG00000130702 E012 68.5958953 0.0011856976 2.687133e-04 3.413908e-03 20 62310665 62310829 165 - 1.651 1.840 0.638
ENSG00000130702 E013 87.7798954 0.0004267811 1.470445e-04 2.063101e-03 20 62310902 62311094 193 - 1.771 1.938 0.562
ENSG00000130702 E014 64.6430401 0.0006380592 5.205591e-04 5.860586e-03 20 62311162 62311256 95 - 1.630 1.809 0.605
ENSG00000130702 E015 36.5786364 0.0021496777 1.884925e-02 9.194151e-02 20 62311257 62311307 51 - 1.402 1.563 0.551
ENSG00000130702 E016 54.8084908 0.0063710081 3.724249e-02 1.475959e-01 20 62311401 62311536 136 - 1.597 1.727 0.442
ENSG00000130702 E017 67.4457331 0.0005870148 1.558336e-03 1.402816e-02 20 62311614 62311784 171 - 1.666 1.824 0.534
ENSG00000130702 E018 36.3541164 0.0020099999 1.293064e-01 3.306511e-01 20 62311920 62311929 10 - 1.445 1.548 0.353
ENSG00000130702 E019 65.4946153 0.0006153313 2.893444e-02 1.241657e-01 20 62311930 62312050 121 - 1.690 1.798 0.365
ENSG00000130702 E020 1.4029807 0.0182701517 8.169962e-02 2.482030e-01 20 62312051 62312146 96 - 0.561 0.252 -1.746
ENSG00000130702 E021 71.7723490 0.0099838007 3.415315e-01 5.794228e-01 20 62312173 62312316 144 - 1.771 1.822 0.172
ENSG00000130702 E022 66.1660776 0.0011824146 4.950744e-02 1.784237e-01 20 62312400 62312532 133 - 1.704 1.801 0.327
ENSG00000130702 E023 70.7880168 0.0035491623 6.948857e-02 2.237534e-01 20 62312632 62312780 149 - 1.734 1.827 0.313
ENSG00000130702 E024 4.6404436 0.0056784527 4.937331e-02 1.780839e-01 20 62312781 62312887 107 - 0.895 0.619 -1.118
ENSG00000130702 E025 60.9126038 0.0006149634 1.018241e-01 2.850372e-01 20 62312888 62313010 123 - 1.681 1.762 0.276
ENSG00000130702 E026 65.1828539 0.0005884442 9.006102e-01 9.521826e-01 20 62313088 62313179 92 - 1.771 1.774 0.010
ENSG00000130702 E027 60.0353067 0.0008015988 8.997096e-01 9.517282e-01 20 62313180 62313250 71 - 1.747 1.737 -0.032
ENSG00000130702 E028 81.4646876 0.0005080105 6.488322e-02 2.136476e-01 20 62313327 62313460 134 - 1.926 1.844 -0.275
ENSG00000130702 E029 0.8563349 0.0172671820 7.103198e-01   20 62313461 62313580 120 - 0.184 0.253 0.583
ENSG00000130702 E030 76.3125744 0.0034133898 8.318540e-01 9.149120e-01 20 62313649 62313802 154 - 1.852 1.838 -0.049
ENSG00000130702 E031 66.6895431 0.0024011604 9.905739e-01 9.970083e-01 20 62314304 62314440 137 - 1.786 1.781 -0.018
ENSG00000130702 E032 2.8657509 0.0096207252 4.781269e-02 1.745608e-01 20 62314441 62314554 114 - 0.759 0.444 -1.416
ENSG00000130702 E033 65.9958564 0.0005886001 2.094590e-01 4.412319e-01 20 62314555 62314725 171 - 1.734 1.793 0.199
ENSG00000130702 E034 1.1786890 0.0330740400 4.489886e-02   20 62314726 62314798 73 - 0.560 0.201 -2.163
ENSG00000130702 E035 62.7091916 0.0005937475 9.153114e-01 9.598015e-01 20 62314799 62314947 149 - 1.763 1.755 -0.029
ENSG00000130702 E036 47.6820009 0.0009949433 1.005447e-01 2.827798e-01 20 62315028 62315095 68 - 1.708 1.615 -0.317
ENSG00000130702 E037 63.9255558 0.0005717112 7.997400e-01 8.962152e-01 20 62315096 62315207 112 - 1.775 1.759 -0.053
ENSG00000130702 E038 57.8700362 0.0006728956 5.872985e-01 7.618279e-01 20 62315948 62316058 111 - 1.743 1.712 -0.104
ENSG00000130702 E039 9.3801347 0.1014004141 2.507030e-01 4.887422e-01 20 62316059 62316322 264 - 1.079 0.923 -0.576
ENSG00000130702 E040 48.5923874 0.0038363204 5.201029e-01 7.150352e-01 20 62316671 62316773 103 - 1.624 1.662 0.128
ENSG00000130702 E041 40.5425101 0.0011472668 4.496317e-02 1.675103e-01 20 62316882 62317023 142 - 1.477 1.604 0.436
ENSG00000130702 E042 39.6864720 0.0015200940 3.938831e-01 6.234368e-01 20 62317345 62317499 155 - 1.527 1.580 0.180
ENSG00000130702 E043 40.2020371 0.0010809717 4.722234e-01 6.817222e-01 20 62317662 62317778 117 - 1.602 1.555 -0.161
ENSG00000130702 E044 41.9085052 0.0052981058 4.714231e-01 6.811692e-01 20 62318454 62318534 81 - 1.625 1.570 -0.188
ENSG00000130702 E045 47.5268698 0.0053108221 7.654876e-01 8.759402e-01 20 62318535 62318650 116 - 1.630 1.646 0.054
ENSG00000130702 E046 60.7617372 0.0008461781 3.046435e-01 5.452314e-01 20 62318843 62319013 171 - 1.708 1.759 0.170
ENSG00000130702 E047 3.0692700 0.0157500106 6.839859e-01 8.252700e-01 20 62319014 62319112 99 - 0.620 0.552 -0.302
ENSG00000130702 E048 46.1401803 0.0010089509 1.943492e-01 4.225770e-01 20 62319684 62319795 112 - 1.573 1.647 0.254
ENSG00000130702 E049 43.2936546 0.0009987221 7.114973e-01 8.427865e-01 20 62320559 62320669 111 - 1.619 1.594 -0.085
ENSG00000130702 E050 44.7186810 0.0010712168 5.681155e-01 7.488719e-01 20 62320739 62320890 152 - 1.590 1.622 0.106
ENSG00000130702 E051 33.3125024 0.0010813960 1.442791e-01 3.537926e-01 20 62322019 62322168 150 - 1.411 1.510 0.341
ENSG00000130702 E052 40.7079562 0.0046769794 1.991297e-01 4.286197e-01 20 62322269 62322449 181 - 1.500 1.587 0.297
ENSG00000130702 E053 26.0522768 0.0017632829 2.363258e-01 4.723191e-01 20 62322658 62322758 101 - 1.312 1.403 0.315
ENSG00000130702 E054 41.7652039 0.0116851846 3.995930e-01 6.279522e-01 20 62323456 62323670 215 - 1.530 1.592 0.214
ENSG00000130702 E055 27.5187401 0.0012507135 1.841261e-01 4.093103e-01 20 62323776 62323856 81 - 1.334 1.432 0.341
ENSG00000130702 E056 41.1274132 0.0010294866 2.836482e-01 5.241087e-01 20 62324080 62324204 125 - 1.625 1.558 -0.228
ENSG00000130702 E057 39.4417877 0.0013614428 1.823188e-01 4.070189e-01 20 62324441 62324554 114 - 1.619 1.536 -0.286
ENSG00000130702 E058 13.2598183 0.2956845192 1.046533e-01 2.900359e-01 20 62324555 62324871 317 - 1.264 1.029 -0.842
ENSG00000130702 E059 3.4142064 0.1990817743 4.594437e-01 6.727404e-01 20 62325140 62325315 176 - 0.672 0.578 -0.413
ENSG00000130702 E060 45.5830554 0.0008796647 1.344758e-02 7.218018e-02 20 62325316 62325546 231 - 1.717 1.576 -0.478
ENSG00000130702 E061 3.0576285 0.0514498445 6.750062e-01 8.195697e-01 20 62326460 62326676 217 - 0.620 0.531 -0.400
ENSG00000130702 E062 24.7947720 0.0252096951 1.880136e-01 4.144476e-01 20 62326677 62326760 84 - 1.461 1.310 -0.524
ENSG00000130702 E063 30.3524957 0.0015037596 2.129037e-01 4.451879e-01 20 62326865 62326966 102 - 1.507 1.416 -0.310
ENSG00000130702 E064 43.5006992 0.0009666533 1.415689e-01 3.498190e-01 20 62327233 62327406 174 - 1.661 1.572 -0.303
ENSG00000130702 E065 43.8443934 0.0013064049 2.332562e-01 4.689054e-01 20 62327529 62327669 141 - 1.651 1.577 -0.252
ENSG00000130702 E066 40.5061486 0.0045383862 2.025689e-01 4.328017e-01 20 62327866 62328010 145 - 1.630 1.539 -0.312
ENSG00000130702 E067 45.6675791 0.0092940187 3.805357e-01 6.126402e-01 20 62328241 62328445 205 - 1.666 1.602 -0.216
ENSG00000130702 E068 40.9447008 0.0547815339 3.132176e-01 5.534560e-01 20 62328844 62329055 212 - 1.667 1.533 -0.457
ENSG00000130702 E069 31.0967598 0.0579618065 4.220359e-01 6.451601e-01 20 62329138 62329253 116 - 1.541 1.423 -0.406
ENSG00000130702 E070 31.6939793 0.0156791121 2.634356e-01 5.026676e-01 20 62329777 62329916 140 - 1.534 1.445 -0.308
ENSG00000130702 E071 33.2932754 0.0051230180 1.119468e-01 3.023304e-01 20 62330488 62330614 127 - 1.567 1.451 -0.398
ENSG00000130702 E072 39.5486491 0.0316488393 3.920855e-01 6.221153e-01 20 62330743 62330944 202 - 1.635 1.524 -0.379
ENSG00000130702 E073 22.6737412 0.0016328161 3.558777e-01 5.924189e-01 20 62331032 62331129 98 - 1.384 1.308 -0.263
ENSG00000130702 E074 24.1044264 0.0056792636 1.255714e-01 3.247453e-01 20 62332372 62332480 109 - 1.438 1.312 -0.437
ENSG00000130702 E075 0.0000000       20 62332487 62332556 70 -      
ENSG00000130702 E076 28.3517607 0.0144987263 5.945290e-01 7.666788e-01 20 62332557 62332717 161 - 1.447 1.401 -0.158
ENSG00000130702 E077 31.6294411 0.0060500343 2.587766e-01 4.976396e-01 20 62333090 62333243 154 - 1.521 1.431 -0.311
ENSG00000130702 E078 25.0703100 0.0261990520 8.621156e-01 9.314967e-01 20 62333375 62333481 107 - 1.377 1.352 -0.088
ENSG00000130702 E079 28.1264747 0.0014353192 4.291370e-02 1.623207e-01 20 62333564 62333706 143 - 1.514 1.368 -0.503
ENSG00000130702 E080 35.0945923 0.0014417576 2.572497e-01 4.960026e-01 20 62333901 62334039 139 - 1.560 1.483 -0.263
ENSG00000130702 E081 30.2407250 0.0029735552 6.987625e-01 8.348229e-01 20 62334186 62334301 116 - 1.421 1.445 0.086
ENSG00000130702 E082 17.1864338 0.0026275515 8.297483e-01 9.136174e-01 20 62334302 62334342 41 - 1.226 1.204 -0.077
ENSG00000130702 E083 21.8136398 0.0102040452 4.373108e-01 6.566990e-01 20 62334522 62334621 100 - 1.364 1.297 -0.233
ENSG00000130702 E084 18.6081524 0.0031981685 2.570504e-01 4.958650e-01 20 62335021 62335126 106 - 1.323 1.224 -0.347
ENSG00000130702 E085 15.4942744 0.0025293779 3.090052e-01 5.495061e-01 20 62335217 62335269 53 - 1.239 1.141 -0.349
ENSG00000130702 E086 18.7824439 0.0184825885 4.082681e-02 1.568698e-01 20 62336340 62336445 106 - 1.394 1.176 -0.766
ENSG00000130702 E087 14.4084499 0.0058335509 3.118286e-02 1.308905e-01 20 62336734 62336786 53 - 1.289 1.080 -0.746
ENSG00000130702 E088 0.1308682 0.0311683571 1.000000e+00   20 62336904 62336986 83 - 0.000 0.078 7.613
ENSG00000130702 E089 24.8585472 0.0014457910 4.684526e-02 1.721725e-01 20 62337590 62337727 138 - 1.470 1.321 -0.516
ENSG00000130702 E090 28.1870307 0.0014266744 5.677664e-02 1.954660e-01 20 62337804 62337938 135 - 1.514 1.378 -0.467
ENSG00000130702 E091 27.9207708 0.0016689938 4.581222e-03 3.237876e-02 20 62338016 62338150 135 - 1.554 1.356 -0.682
ENSG00000130702 E092 30.6447967 0.0113015667 4.880643e-02 1.768004e-01 20 62338232 62338369 138 - 1.567 1.410 -0.537
ENSG00000130702 E093 31.8750386 0.0013159420 8.591491e-02 2.562674e-01 20 62338468 62338608 141 - 1.554 1.438 -0.398
ENSG00000130702 E094 0.9636204 0.0174179461 7.557893e-01   20 62345414 62345585 172 - 0.312 0.253 -0.414
ENSG00000130702 E095 27.6998059 0.0012089589 1.442926e-01 3.538087e-01 20 62345818 62345877 60 - 1.485 1.378 -0.367
ENSG00000130702 E096 40.2769365 0.0031812970 6.887174e-03 4.412588e-02 20 62346081 62346215 135 - 1.681 1.506 -0.596
ENSG00000130702 E097 24.3121750 0.0068711893 2.834427e-03 2.240092e-02 20 62346506 62346557 52 - 1.514 1.270 -0.844
ENSG00000130702 E098 18.3660395 0.0021269637 2.270255e-01 4.617982e-01 20 62346558 62346596 39 - 1.312 1.204 -0.378
ENSG00000130702 E099 25.9810840 0.0334615468 3.868550e-01 6.179862e-01 20 62346682 62346800 119 - 1.445 1.360 -0.293
ENSG00000130702 E100 20.6403678 0.0182939211 5.976762e-01 7.687579e-01 20 62346913 62347028 116 - 1.322 1.277 -0.160
ENSG00000130702 E101 0.6544085 0.0188544800 5.085629e-02   20 62350988 62351257 270 - 0.412 0.078 -3.002
ENSG00000130702 E102 19.3441032 0.0062261696 1.218208e-01 3.187570e-01 20 62351704 62351801 98 - 1.363 1.224 -0.487
ENSG00000130702 E103 27.9645311 0.0015907390 1.812051e-02 8.942981e-02 20 62351909 62352079 171 - 1.534 1.367 -0.575
ENSG00000130702 E104 23.9069377 0.0038120176 1.228035e-02 6.756431e-02 20 62352242 62352360 119 - 1.484 1.287 -0.683
ENSG00000130702 E105 18.6270067 0.2872972715 6.250808e-01 7.873788e-01 20 62353134 62353251 118 - 1.222 1.252 0.106
ENSG00000130702 E106 21.1409191 0.0019274817 4.102789e-01 6.362240e-01 20 62362400 62362552 153 - 1.344 1.274 -0.247
ENSG00000130702 E107 10.7048732 0.0271273663 2.238513e-01 4.580409e-01 20 62366949 62367312 364 - 1.120 0.964 -0.571