ENSG00000130414

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000485344 ENSG00000130414 HEK293_OSMI2_6hA HEK293_TMG_6hB NDUFA10 protein_coding retained_intron 95.00844 99.48507 90.03145 18.20647 3.021279 -0.1440357 7.501292 5.822423 11.21010 0.5491717 0.1476378 0.9439187 0.0847250 0.0656000 0.1249000 0.0593000 2.967323e-01 1.465726e-06 TRUE TRUE
ENST00000620965 ENSG00000130414 HEK293_OSMI2_6hA HEK293_TMG_6hB NDUFA10 protein_coding protein_coding 95.00844 99.48507 90.03145 18.20647 3.021279 -0.1440357 30.134712 39.437938 22.39442 9.3169079 0.7953145 -0.8161664 0.3031917 0.3862333 0.2498667 -0.1363667 8.728673e-02 1.465726e-06 FALSE TRUE
MSTRG.20164.6 ENSG00000130414 HEK293_OSMI2_6hA HEK293_TMG_6hB NDUFA10 protein_coding   95.00844 99.48507 90.03145 18.20647 3.021279 -0.1440357 44.800684 36.191006 46.04054 7.1334766 1.8530189 0.3471884 0.4760708 0.3619667 0.5111667 0.1492000 1.465726e-06 1.465726e-06 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000130414 E001 3.7360995 6.803963e-03 1.031132e-02 5.945401e-02 2 239892450 239892678 229 - 0.400 0.795 1.794
ENSG00000130414 E002 2.5511515 1.247439e-02 4.535425e-02 1.684645e-01 2 239892679 239892707 29 - 0.329 0.661 1.658
ENSG00000130414 E003 4.6012523 6.287786e-03 2.486972e-01 4.864606e-01 2 239895205 239895314 110 - 0.643 0.795 0.624
ENSG00000130414 E004 0.4756169 6.502618e-02 1.422353e-01   2 239912249 239912434 186 - 0.000 0.262 14.134
ENSG00000130414 E005 0.6783511 1.938749e-02 6.783499e-02   2 239912801 239912990 190 - 0.000 0.323 15.126
ENSG00000130414 E006 0.2027342 3.370843e-02 6.192739e-01   2 239938374 239938710 337 - 0.000 0.106 12.877
ENSG00000130414 E007 1.9394323 2.761916e-01 7.492162e-01 8.662868e-01 2 239945616 239945651 36 - 0.401 0.506 0.544
ENSG00000130414 E008 11.3982176 6.151526e-02 5.242455e-01 7.179638e-01 2 239949560 239951018 1459 - 1.036 1.119 0.304
ENSG00000130414 E009 0.1723744 4.158762e-02 6.187588e-01   2 239957358 239957370 13 - 0.000 0.106 12.772
ENSG00000130414 E010 0.1723744 4.158762e-02 6.187588e-01   2 239957371 239957371 1 - 0.000 0.106 12.772
ENSG00000130414 E011 0.1723744 4.158762e-02 6.187588e-01   2 239957372 239957372 1 - 0.000 0.106 12.772
ENSG00000130414 E012 0.1723744 4.158762e-02 6.187588e-01   2 239957373 239957373 1 - 0.000 0.106 12.772
ENSG00000130414 E013 0.3447487 6.448234e-01 4.478782e-01   2 239957374 239957386 13 - 0.000 0.194 12.800
ENSG00000130414 E014 0.3447487 6.448234e-01 4.478782e-01   2 239957387 239957390 4 - 0.000 0.194 12.800
ENSG00000130414 E015 0.3447487 6.448234e-01 4.478782e-01   2 239957391 239957405 15 - 0.000 0.194 12.800
ENSG00000130414 E016 0.4873834 4.180475e-01 7.974625e-01   2 239957406 239957408 3 - 0.138 0.193 0.590
ENSG00000130414 E017 66.6349283 8.243837e-02 3.335422e-01 5.720952e-01 2 239957409 239958536 1128 - 1.731 1.879 0.499
ENSG00000130414 E018 32.6739931 1.104276e-01 9.512901e-01 9.776268e-01 2 239958537 239959037 501 - 1.500 1.535 0.121
ENSG00000130414 E019 120.5827246 3.705086e-02 4.982547e-01 6.996347e-01 2 239959038 239960738 1701 - 2.045 2.101 0.187
ENSG00000130414 E020 6.7692551 6.123171e-02 8.971919e-01 9.504085e-01 2 239960739 239960739 1 - 0.913 0.876 -0.141
ENSG00000130414 E021 7.1140038 8.507788e-02 9.546703e-01 9.792534e-01 2 239960740 239960740 1 - 0.913 0.906 -0.027
ENSG00000130414 E022 73.9580529 2.237482e-03 2.226049e-03 1.856385e-02 2 239960741 239960781 41 - 1.783 1.917 0.450
ENSG00000130414 E023 109.7508123 7.361933e-04 6.455627e-07 1.941753e-05 2 239960782 239960805 24 - 1.929 2.099 0.572
ENSG00000130414 E024 127.5238289 1.206545e-03 6.386163e-06 1.424447e-04 2 239960806 239960832 27 - 2.006 2.157 0.504
ENSG00000130414 E025 188.2567564 5.837180e-03 6.920742e-03 4.427046e-02 2 239960833 239960883 51 - 2.201 2.315 0.382
ENSG00000130414 E026 290.6824576 2.680169e-03 5.413010e-06 1.235390e-04 2 239960884 239960954 71 - 2.373 2.512 0.465
ENSG00000130414 E027 344.0022270 4.021461e-03 1.764390e-04 2.408052e-03 2 239960955 239961022 68 - 2.454 2.580 0.421
ENSG00000130414 E028 619.4445161 2.950445e-03 1.720146e-05 3.362342e-04 2 239961023 239961163 141 - 2.715 2.831 0.384
ENSG00000130414 E029 395.0966889 1.176504e-03 1.296629e-06 3.559609e-05 2 239961164 239961186 23 - 2.526 2.632 0.352
ENSG00000130414 E030 2.1304524 5.997289e-01 2.637317e-01 5.030178e-01 2 239964183 239964261 79 - 0.239 0.603 2.039
ENSG00000130414 E031 13.3328217 2.437109e-02 2.291891e-01 4.641788e-01 2 239969221 239969762 542 - 1.066 1.189 0.445
ENSG00000130414 E032 2.6656621 8.552236e-03 4.236489e-01 6.463568e-01 2 239972240 239972726 487 - 0.643 0.506 -0.624
ENSG00000130414 E033 15.1635642 2.808783e-03 3.901719e-03 2.860423e-02 2 239972727 239973384 658 - 1.338 1.070 -0.951
ENSG00000130414 E034 8.8707852 3.596722e-03 1.916407e-03 1.651695e-02 2 239973385 239973656 272 - 1.164 0.813 -1.303
ENSG00000130414 E035 1.9217194 1.060308e-02 2.771577e-02 1.204625e-01 2 239973657 239973661 5 - 0.643 0.262 -2.040
ENSG00000130414 E036 1.1126494 2.818120e-01 2.102024e-01   2 239976505 239976585 81 - 0.139 0.422 2.119
ENSG00000130414 E037 0.4458772 2.176816e-02 7.394075e-01   2 239982115 239982219 105 - 0.139 0.191 0.546
ENSG00000130414 E038 0.1614157 3.396896e-02 3.776319e-01   2 239983517 239983717 201 - 0.139 0.000 -14.174
ENSG00000130414 E039 0.4054685 4.562379e-01 4.047013e-01   2 239987516 239987578 63 - 0.000 0.199 12.929
ENSG00000130414 E040 0.0000000       2 239987915 239987929 15 -      
ENSG00000130414 E041 0.0000000       2 239987930 239987953 24 -      
ENSG00000130414 E042 0.0000000       2 239987954 239987961 8 -      
ENSG00000130414 E043 0.0000000       2 239987962 239987973 12 -      
ENSG00000130414 E044 3.2463988 1.371751e-01 8.636730e-01 9.324319e-01 2 239987974 239988445 472 - 0.649 0.581 -0.295
ENSG00000130414 E045 1.9571706 1.804416e-01 9.749909e-01 9.893672e-01 2 239988446 239988448 3 - 0.467 0.432 -0.182
ENSG00000130414 E046 3.2463988 1.371751e-01 8.636730e-01 9.324319e-01 2 239988449 239988612 164 - 0.649 0.581 -0.295
ENSG00000130414 E047 3.3962356 1.783716e-01 7.152370e-01 8.450895e-01 2 239988613 239989251 639 - 0.687 0.581 -0.461
ENSG00000130414 E048 1.3218009 1.373118e-02 7.000748e-01   2 239989252 239989342 91 - 0.400 0.323 -0.453
ENSG00000130414 E049 5.2621075 5.338292e-02 1.763347e-01 3.988842e-01 2 239989343 239989896 554 - 0.644 0.856 0.856
ENSG00000130414 E050 1.9349203 7.454053e-01 4.088159e-01 6.350996e-01 2 239989897 239990073 177 - 0.245 0.564 1.808
ENSG00000130414 E051 646.4743721 1.744766e-04 1.066227e-05 2.218722e-04 2 239990074 239990182 109 - 2.774 2.826 0.172
ENSG00000130414 E052 2.7915857 9.023935e-02 8.685323e-01 9.351159e-01 2 239990183 239993569 3387 - 0.560 0.579 0.083
ENSG00000130414 E053 2.9514087 1.087536e-02 5.765102e-01 7.547807e-01 2 240000183 240000387 205 - 0.643 0.542 -0.450
ENSG00000130414 E054 599.5307936 1.301630e-03 3.732418e-01 6.067064e-01 2 240005210 240005286 77 - 2.768 2.775 0.023
ENSG00000130414 E055 359.1580585 1.647050e-03 5.238101e-01 7.176801e-01 2 240005287 240005295 9 - 2.568 2.537 -0.104
ENSG00000130414 E056 478.6409339 2.093421e-03 6.643794e-01 8.126163e-01 2 240007316 240007370 55 - 2.689 2.664 -0.084
ENSG00000130414 E057 540.1870698 8.741549e-04 5.540838e-02 1.922566e-01 2 240011617 240011696 80 - 2.757 2.704 -0.177
ENSG00000130414 E058 183.1166574 8.940120e-02 2.397037e-02 1.090002e-01 2 240011697 240012331 635 - 2.421 2.090 -1.108
ENSG00000130414 E059 56.9555522 8.073868e-02 1.147669e-02 6.431067e-02 2 240012332 240012486 155 - 1.935 1.560 -1.272
ENSG00000130414 E060 35.1453184 1.105893e-01 2.516138e-02 1.127028e-01 2 240012487 240012534 48 - 1.732 1.347 -1.320
ENSG00000130414 E061 456.0738491 3.275478e-02 6.835994e-04 7.300855e-03 2 240012535 240014694 2160 - 2.810 2.493 -1.054
ENSG00000130414 E062 36.9753828 2.341095e-02 6.205756e-04 6.755642e-03 2 240014695 240014738 44 - 1.740 1.407 -1.136
ENSG00000130414 E063 445.3975197 2.659928e-04 2.056016e-03 1.743353e-02 2 240014739 240014768 30 - 2.682 2.612 -0.233
ENSG00000130414 E064 571.4745892 3.023839e-04 8.482867e-03 5.153232e-02 2 240014769 240014840 72 - 2.783 2.725 -0.193
ENSG00000130414 E065 402.4445166 2.436780e-04 6.346806e-03 4.143920e-02 2 240014841 240014860 20 - 2.634 2.568 -0.220
ENSG00000130414 E066 0.2027342 3.370843e-02 6.192739e-01   2 240017815 240017905 91 - 0.000 0.106 12.877
ENSG00000130414 E067 1.7123802 1.568515e-02 8.748948e-01 9.386928e-01 2 240018407 240018523 117 - 0.461 0.423 -0.194
ENSG00000130414 E068 2.5466101 8.643251e-03 9.490540e-01 9.766485e-01 2 240018524 240018552 29 - 0.562 0.541 -0.094
ENSG00000130414 E069 303.2960862 4.672036e-04 2.951202e-02 1.259188e-01 2 240018553 240018554 2 - 2.510 2.446 -0.213
ENSG00000130414 E070 557.8811222 7.213038e-04 2.343984e-03 1.934125e-02 2 240018555 240018639 85 - 2.780 2.707 -0.241
ENSG00000130414 E071 0.9534696 3.589122e-02 5.036365e-02   2 240021087 240021116 30 - 0.460 0.106 -2.768
ENSG00000130414 E072 3.4706999 1.512581e-02 5.402775e-01 7.291996e-01 2 240021117 240021196 80 - 0.711 0.606 -0.450
ENSG00000130414 E073 854.2720319 1.056105e-03 2.275041e-02 1.051247e-01 2 240021197 240021412 216 - 2.956 2.901 -0.185
ENSG00000130414 E074 0.4514866 2.176816e-02 4.168232e-01   2 240021771 240021860 90 - 0.244 0.106 -1.456
ENSG00000130414 E075 728.0984342 9.433803e-05 9.237009e-01 9.642235e-01 2 240022172 240022340 169 - 2.864 2.850 -0.044
ENSG00000130414 E076 262.3768010 4.824355e-04 4.398024e-02 1.650269e-01 2 240025227 240025229 3 - 2.395 2.429 0.114
ENSG00000130414 E077 326.2046972 1.780685e-04 2.190918e-03 1.834023e-02 2 240025230 240025247 18 - 2.480 2.528 0.160
ENSG00000130414 E078 361.1088150 2.019289e-04 5.127890e-05 8.501745e-04 2 240025248 240025397 150 - 2.514 2.579 0.217
ENSG00000130414 E079 0.0000000       2 240025572 240025743 172 -