ENSG00000130396

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000485634 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding protein_coding 29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 1.095225 2.9857508 0.000000 0.3027187 0.0000000 -8.226774 0.04424167 0.11300000 0.00000000 -0.113000000 3.655835e-29 3.655835e-29 FALSE TRUE
ENST00000511503 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding retained_intron 29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 4.187685 4.4041031 6.195280 0.8986471 0.6023989 0.491376 0.13956667 0.17990000 0.17263333 -0.007266667 1.000000e+00 3.655835e-29   FALSE
MSTRG.29321.13 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding   29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 2.588741 2.0425258 6.099556 0.3159128 0.8717777 1.573667 0.08513750 0.07636667 0.17110000 0.094733333 3.947661e-02 3.655835e-29 FALSE TRUE
MSTRG.29321.14 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding   29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 1.546509 0.0000000 4.588836 0.0000000 0.2498550 8.845125 0.04452083 0.00000000 0.12856667 0.128566667 4.572102e-27 3.655835e-29 FALSE TRUE
MSTRG.29321.16 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding   29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 2.723540 0.9407753 5.007381 0.6630778 0.8907970 2.399758 0.08245000 0.03566667 0.13856667 0.102900000 4.629274e-01 3.655835e-29 FALSE TRUE
MSTRG.29321.19 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding   29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 2.828940 3.2752768 1.109915 0.6801200 0.8387051 -1.552626 0.09427500 0.12220000 0.03110000 -0.091100000 4.362165e-01 3.655835e-29 FALSE TRUE
MSTRG.29321.24 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding   29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 1.846624 0.3002756 2.754291 0.3002756 0.7848632 3.155288 0.05677083 0.01483333 0.07596667 0.061133333 2.233118e-01 3.655835e-29 FALSE TRUE
MSTRG.29321.38 ENSG00000130396 HEK293_OSMI2_6hA HEK293_TMG_6hB AFDN protein_coding   29.83095 26.60102 35.76453 3.241612 1.260494 0.4269088 1.203618 3.1517848 0.000000 2.6720215 0.0000000 -8.304595 0.04718333 0.10780000 0.00000000 -0.107800000 3.419415e-01 3.655835e-29 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000130396 E001 0.3032425 0.0274424043 1.253783e-01   6 167826878 167826910 33 + 0.000 0.251 10.761
ENSG00000130396 E002 0.3032425 0.0274424043 1.253783e-01   6 167826911 167826921 11 + 0.000 0.251 13.237
ENSG00000130396 E003 0.7844689 0.0216999293 8.695640e-02   6 167826922 167826933 12 + 0.102 0.409 2.555
ENSG00000130396 E004 0.9458845 0.0170230867 2.296266e-01   6 167826934 167826960 27 + 0.185 0.409 1.556
ENSG00000130396 E005 1.1238684 0.0247672498 4.320398e-01   6 167826961 167826990 30 + 0.255 0.409 0.968
ENSG00000130396 E006 1.1709841 0.1623320502 9.410620e-01   6 167826991 167826999 9 + 0.318 0.337 0.117
ENSG00000130396 E007 9.1629783 0.0169433744 2.703646e-01 5.103502e-01 6 167827000 167827095 96 + 0.940 1.101 0.589
ENSG00000130396 E008 13.8919535 0.0335043642 8.818917e-01 9.423349e-01 6 167827096 167827132 37 + 1.154 1.211 0.204
ENSG00000130396 E009 49.5340353 0.0010823929 1.980875e-04 2.653819e-03 6 167827133 167827237 105 + 1.763 1.590 -0.586
ENSG00000130396 E010 0.6787990 0.0355919731 7.922846e-02   6 167827635 167827932 298 + 0.315 0.000 -14.183
ENSG00000130396 E011 109.4874077 0.0003697388 5.825531e-09 2.874228e-07 6 167864551 167864746 196 + 2.102 1.918 -0.617
ENSG00000130396 E012 28.4551540 0.0207133508 2.038846e-01 4.344872e-01 6 167870383 167870385 3 + 1.499 1.393 -0.363
ENSG00000130396 E013 110.9399037 0.0003820181 8.088650e-09 3.880336e-07 6 167870386 167870498 113 + 2.106 1.924 -0.608
ENSG00000130396 E014 31.1150085 0.0011256021 5.063198e-04 5.736906e-03 6 167872214 167872216 3 + 1.573 1.368 -0.706
ENSG00000130396 E015 129.9187622 0.0003352295 1.218859e-13 1.492360e-11 6 167872217 167872377 161 + 2.187 1.965 -0.745
ENSG00000130396 E016 138.3811630 0.0006702952 6.793615e-06 1.500861e-04 6 167875335 167875495 161 + 2.184 2.061 -0.411
ENSG00000130396 E017 99.3563677 0.0009274539 3.124123e-05 5.593546e-04 6 167880360 167880434 75 + 2.045 1.908 -0.462
ENSG00000130396 E018 79.9672847 0.0027231396 3.856653e-04 4.593550e-03 6 167880435 167880480 46 + 1.955 1.809 -0.491
ENSG00000130396 E019 79.7367472 0.0013034419 6.145587e-09 3.014621e-07 6 167880481 167880517 37 + 1.981 1.744 -0.798
ENSG00000130396 E020 108.8693194 0.0003699749 1.865266e-15 3.016810e-13 6 167889215 167889326 112 + 2.125 1.859 -0.894
ENSG00000130396 E021 142.4781160 0.0059596340 2.655387e-07 8.862928e-06 6 167890862 167891029 168 + 2.231 2.006 -0.753
ENSG00000130396 E022 0.0000000       6 167893680 167893861 182 +      
ENSG00000130396 E023 0.8094069 0.2246098686 1.431210e-01   6 167893862 167893906 45 + 0.102 0.410 2.559
ENSG00000130396 E024 109.3413026 0.0006455617 1.249279e-06 3.446334e-05 6 167896878 167896972 95 + 2.095 1.943 -0.507
ENSG00000130396 E025 219.9153461 0.0002575101 5.220128e-10 3.206140e-08 6 167898205 167898467 263 + 2.388 2.257 -0.439
ENSG00000130396 E026 128.6832834 0.0003301002 6.607747e-07 1.983294e-05 6 167902317 167902386 70 + 2.158 2.020 -0.461
ENSG00000130396 E027 141.2741815 0.0002784868 6.413260e-04 6.930443e-03 6 167907171 167907289 119 + 2.177 2.097 -0.268
ENSG00000130396 E028 90.1000385 0.0004583912 1.924385e-01 4.200115e-01 6 167911101 167911162 62 + 1.965 1.940 -0.083
ENSG00000130396 E029 156.7318990 0.0004234973 6.062881e-04 6.632845e-03 6 167911284 167911489 206 + 2.223 2.146 -0.259
ENSG00000130396 E030 16.2835915 0.0528078205 9.273485e-02 2.688514e-01 6 167911490 167912164 675 + 1.304 1.095 -0.741
ENSG00000130396 E031 21.3630889 0.0016117290 1.576308e-02 8.096505e-02 6 167913403 167913423 21 + 1.243 1.448 0.713
ENSG00000130396 E032 14.6864775 0.0944281287 4.884794e-01 6.929784e-01 6 167913541 167914167 627 + 1.220 1.141 -0.282
ENSG00000130396 E033 67.9368374 0.0043900136 2.729079e-02 1.191446e-01 6 167914168 167914173 6 + 1.869 1.774 -0.319
ENSG00000130396 E034 149.8422240 0.0003187642 5.745281e-03 3.847019e-02 6 167914174 167914313 140 + 2.196 2.138 -0.192
ENSG00000130396 E035 119.9259255 0.0005185675 4.344848e-01 6.545788e-01 6 167914644 167914738 95 + 2.074 2.072 -0.006
ENSG00000130396 E036 167.8090392 0.0002534381 5.954183e-01 7.673187e-01 6 167915168 167915400 233 + 2.216 2.227 0.035
ENSG00000130396 E037 77.0794263 0.0005138256 4.279901e-01 6.494535e-01 6 167915401 167915433 33 + 1.860 1.918 0.194
ENSG00000130396 E038 135.9492334 0.0022818646 2.721148e-01 5.119748e-01 6 167917089 167917232 144 + 2.139 2.124 -0.049
ENSG00000130396 E039 181.4931574 0.0084043841 5.568424e-01 7.410827e-01 6 167918735 167918933 199 + 2.255 2.255 0.001
ENSG00000130396 E040 147.4516209 0.0002800984 8.126880e-01 9.038127e-01 6 167922856 167922953 98 + 2.151 2.183 0.108
ENSG00000130396 E041 83.8729775 0.0009498123 6.300080e-01 7.904264e-01 6 167922954 167922959 6 + 1.920 1.924 0.016
ENSG00000130396 E042 2.4842114 0.0105348376 1.668906e-01 3.864079e-01 6 167922960 167923207 248 + 0.414 0.656 1.145
ENSG00000130396 E043 154.6372440 0.0003313211 7.677134e-01 8.772633e-01 6 167925005 167925091 87 + 2.177 2.193 0.054
ENSG00000130396 E044 0.0000000       6 167932602 167932760 159 +      
ENSG00000130396 E045 137.7768087 0.0003567733 1.814966e-01 4.059678e-01 6 167943129 167943191 63 + 2.140 2.123 -0.057
ENSG00000130396 E046 72.1493959 0.0006208362 2.599781e-01 4.990016e-01 6 167943192 167943194 3 + 1.864 1.840 -0.080
ENSG00000130396 E047 137.3341449 0.0012875770 8.581955e-01 9.294076e-01 6 167943402 167943475 74 + 2.124 2.142 0.059
ENSG00000130396 E048 168.6354506 0.0004018775 6.384979e-01 7.960564e-01 6 167943941 167944059 119 + 2.217 2.229 0.038
ENSG00000130396 E049 209.9071130 0.0011746077 2.997866e-01 5.401949e-01 6 167946707 167946901 195 + 2.319 2.313 -0.019
ENSG00000130396 E050 138.9268272 0.0012685934 9.730249e-01 9.884787e-01 6 167947853 167947944 92 + 2.130 2.157 0.092
ENSG00000130396 E051 7.7851321 0.1950232065 6.565946e-01 8.076785e-01 6 167948029 167948292 264 + 0.947 0.914 -0.121
ENSG00000130396 E052 225.8899462 0.0005279059 3.601076e-01 5.957928e-01 6 167948293 167948478 186 + 2.346 2.347 0.005
ENSG00000130396 E053 441.0003471 0.0001779060 1.507769e-01 3.634058e-01 6 167951186 167951903 718 + 2.618 2.669 0.168
ENSG00000130396 E054 97.1328776 0.0004978817 1.007614e-02 5.848341e-02 6 167951904 167951948 45 + 1.932 2.051 0.401
ENSG00000130396 E055 265.6286357 0.0002151721 1.676907e-05 3.287284e-04 6 167951949 167952187 239 + 2.365 2.486 0.403
ENSG00000130396 E056 1.2190798 0.0610320282 9.389578e-01   6 167952188 167952262 75 + 0.315 0.340 0.159
ENSG00000130396 E057 0.1614157 0.0334337599 6.639773e-01   6 167954458 167954460 3 + 0.102 0.000 -12.228
ENSG00000130396 E058 0.3228314 0.4034684567 4.235188e-01   6 167954461 167954493 33 + 0.186 0.000 -11.927
ENSG00000130396 E059 86.9503638 0.0009568008 7.496043e-03 4.701409e-02 6 167962433 167962438 6 + 1.882 2.014 0.444
ENSG00000130396 E060 179.8185567 0.0003033285 5.573283e-05 9.148189e-04 6 167962439 167962567 129 + 2.192 2.326 0.449
ENSG00000130396 E061 126.8226788 0.0048855815 3.919656e-04 4.652926e-03 6 167962568 167965029 2462 + 2.013 2.197 0.614
ENSG00000130396 E062 61.0355775 0.0006372068 2.915891e-04 3.644821e-03 6 167965757 167965830 74 + 1.698 1.888 0.641
ENSG00000130396 E063 21.8338394 0.0026676673 7.074500e-05 1.119572e-03 6 167965831 167965853 23 + 1.194 1.519 1.133
ENSG00000130396 E064 52.4311399 0.0045289657 7.687664e-06 1.670132e-04 6 167965854 167965963 110 + 1.586 1.870 0.961
ENSG00000130396 E065 82.8856839 0.0004322412 6.677676e-06 1.479482e-04 6 167965964 167966045 82 + 1.824 2.025 0.676
ENSG00000130396 E066 51.0536029 0.0131826528 9.005465e-01 9.521466e-01 6 167966046 167966270 225 + 1.698 1.730 0.111
ENSG00000130396 E067 12.3027944 0.0858003062 5.883350e-01 7.625726e-01 6 167966271 167966276 6 + 1.145 1.074 -0.253
ENSG00000130396 E068 56.2252050 0.0991962040 9.779355e-01 9.907410e-01 6 167968449 167968802 354 + 1.726 1.780 0.182
ENSG00000130396 E069 52.2768898 0.1152550450 8.484747e-01 9.240765e-01 6 167968803 167969018 216 + 1.678 1.771 0.313
ENSG00000130396 E070 26.1503155 0.0838734683 4.957330e-01 6.979975e-01 6 167969019 167969113 95 + 1.356 1.512 0.538
ENSG00000130396 E071 150.5121377 0.0006055869 7.765418e-06 1.685084e-04 6 167969114 167969198 85 + 2.102 2.263 0.538
ENSG00000130396 E072 1573.8714525 0.0019582968 2.129459e-12 2.070012e-10 6 167969782 167972023 2242 + 3.117 3.276 0.530