ENSG00000130294

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000460788 ENSG00000130294 HEK293_OSMI2_6hA HEK293_TMG_6hB KIF1A protein_coding retained_intron 31.08515 48.49094 13.38699 4.080061 0.4732727 -1.856103 2.047243 0.6040968 0.009329391 0.2819901 0.009329391 -4.989598 0.05129167 0.01316667 0.00070000 -0.01246667 0.264111761 0.007609161 FALSE TRUE
ENST00000649096 ENSG00000130294 HEK293_OSMI2_6hA HEK293_TMG_6hB KIF1A protein_coding protein_coding 31.08515 48.49094 13.38699 4.080061 0.4732727 -1.856103 20.636350 35.9211339 11.080969016 2.2313176 0.481761649 -1.695849 0.69442917 0.74463333 0.82813333 0.08350000 0.538815998 0.007609161 FALSE TRUE
ENST00000649190 ENSG00000130294 HEK293_OSMI2_6hA HEK293_TMG_6hB KIF1A protein_coding processed_transcript 31.08515 48.49094 13.38699 4.080061 0.4732727 -1.856103 3.470795 6.4260445 0.000000000 2.9844389 0.000000000 -9.330030 0.08277917 0.12546667 0.00000000 -0.12546667 0.007609161 0.007609161 FALSE TRUE
MSTRG.20173.2 ENSG00000130294 HEK293_OSMI2_6hA HEK293_TMG_6hB KIF1A protein_coding   31.08515 48.49094 13.38699 4.080061 0.4732727 -1.856103 1.801900 3.2812999 0.563480415 0.4434324 0.050796261 -2.520841 0.05515417 0.06713333 0.04193333 -0.02520000 0.313080268 0.007609161 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000130294 E001 0.0000000       2 240713761 240713763 3 -      
ENSG00000130294 E002 0.6064850 0.0197776009 4.572450e-01   2 240713764 240713766 3 - 0.000 0.210 10.621
ENSG00000130294 E003 51.6983194 0.0010014891 4.762599e-02 1.741037e-01 2 240713767 240713805 39 - 1.512 1.643 0.447
ENSG00000130294 E004 73.1495175 0.0023150675 7.157674e-02 2.279875e-01 2 240713806 240713815 10 - 1.680 1.785 0.356
ENSG00000130294 E005 94.1159883 0.0011350378 4.345708e-03 3.107247e-02 2 240713816 240713833 18 - 1.753 1.899 0.495
ENSG00000130294 E006 1575.5017181 0.0014033398 8.922239e-15 1.325635e-12 2 240713834 240715322 1489 - 2.953 3.114 0.536
ENSG00000130294 E007 563.7835766 0.0013977973 2.860348e-08 1.209845e-06 2 240715323 240715710 388 - 2.518 2.668 0.501
ENSG00000130294 E008 1029.7864109 0.0001450572 7.601698e-08 2.905567e-06 2 240715711 240716668 958 - 2.840 2.921 0.269
ENSG00000130294 E009 364.4434226 0.0001866443 1.189281e-03 1.134838e-02 2 240716669 240716975 307 - 2.389 2.469 0.267
ENSG00000130294 E010 78.2301792 0.0007491769 5.771817e-01 7.552251e-01 2 240716976 240716982 7 - 1.768 1.796 0.094
ENSG00000130294 E011 72.6231955 0.0005780123 4.453861e-01 6.623563e-01 2 240716983 240716983 1 - 1.726 1.767 0.136
ENSG00000130294 E012 72.8005592 0.0005578395 4.329131e-01 6.534199e-01 2 240716984 240716992 9 - 1.727 1.768 0.140
ENSG00000130294 E013 72.5817341 0.0005865156 3.254334e-01 5.646597e-01 2 240716993 240717004 12 - 1.715 1.768 0.178
ENSG00000130294 E014 122.8103919 0.0013137271 6.440982e-01 7.995869e-01 2 240717005 240717082 78 - 1.970 1.989 0.062
ENSG00000130294 E015 79.5106289 0.0066832120 6.777564e-01 8.213059e-01 2 240717083 240717095 13 - 1.781 1.804 0.077
ENSG00000130294 E016 167.6766096 0.0060104358 4.683339e-02 1.721438e-01 2 240717096 240717182 87 - 2.033 2.138 0.351
ENSG00000130294 E017 313.5260817 0.0018547021 3.918645e-01 6.219100e-01 2 240717183 240717363 181 - 2.368 2.397 0.095
ENSG00000130294 E018 149.9129119 0.0011941179 8.763750e-01 9.394076e-01 2 240717364 240717406 43 - 2.068 2.075 0.024
ENSG00000130294 E019 261.0239050 0.0002281847 2.484404e-01 4.862496e-01 2 240718050 240718168 119 - 2.286 2.319 0.110
ENSG00000130294 E020 307.3241662 0.0001763133 2.206292e-01 4.542093e-01 2 240719006 240719148 143 - 2.356 2.387 0.106
ENSG00000130294 E021 201.1475120 0.0009300950 6.023253e-02 2.033570e-01 2 240719149 240719198 50 - 2.145 2.211 0.219
ENSG00000130294 E022 289.3230218 0.0002868092 1.032573e-03 1.016019e-02 2 240719774 240719926 153 - 2.277 2.370 0.309
ENSG00000130294 E023 1.6360021 0.0134633048 4.035270e-01 6.311423e-01 2 240719927 240719946 20 - 0.479 0.320 -0.887
ENSG00000130294 E024 3.2430494 0.2522039974 8.434928e-01 9.213463e-01 2 240719947 240720224 278 - 0.569 0.541 -0.130
ENSG00000130294 E025 1.3042373 0.0129684998 6.394914e-01   2 240720225 240720389 165 - 0.223 0.319 0.697
ENSG00000130294 E026 5.1467254 0.1641721180 2.767229e-02 1.203029e-01 2 240720627 240720913 287 - 1.023 0.565 -1.838
ENSG00000130294 E027 228.2125445 0.0005300921 9.345289e-05 1.413093e-03 2 240720914 240721038 125 - 2.143 2.273 0.433
ENSG00000130294 E028 0.3032425 0.0244411696 1.000000e+00   2 240721039 240721053 15 - 0.000 0.117 12.035
ENSG00000130294 E029 194.0703504 0.0009744085 7.649720e-04 7.986097e-03 2 240721807 240721884 78 - 2.080 2.206 0.421
ENSG00000130294 E030 306.5199436 0.0010431130 3.834281e-05 6.647092e-04 2 240722456 240722656 201 - 2.273 2.401 0.430
ENSG00000130294 E031 282.7854951 0.0030629186 1.922033e-03 1.655116e-02 2 240723413 240723558 146 - 2.244 2.365 0.403
ENSG00000130294 E032 1.5842595 0.3219705688 6.787376e-01 8.219211e-01 2 240723559 240723586 28 - 0.225 0.358 0.920
ENSG00000130294 E033 224.2967255 0.0002869479 1.285828e-01 3.296226e-01 2 240723975 240724036 62 - 2.207 2.254 0.157
ENSG00000130294 E034 3.0391272 0.4790080566 4.553168e-01 6.697548e-01 2 240724037 240724849 813 - 0.223 0.571 2.019
ENSG00000130294 E035 270.7080133 0.0015099973 2.563799e-01 4.951407e-01 2 240725271 240725404 134 - 2.297 2.333 0.123
ENSG00000130294 E036 3.3497147 0.5033459339 8.257088e-01 9.113226e-01 2 240725405 240726113 709 - 0.564 0.558 -0.030
ENSG00000130294 E037 1.4582059 0.3465288447 3.800891e-01 6.122459e-01 2 240726114 240726183 70 - 0.477 0.288 -1.085
ENSG00000130294 E038 2.8622115 0.3574478841 3.585309e-01 5.946057e-01 2 240726184 240726707 524 - 0.640 0.467 -0.803
ENSG00000130294 E039 0.6544085 0.0189073481 1.592404e-02   2 240726708 240726825 118 - 0.479 0.063 -3.694
ENSG00000130294 E040 118.6429882 0.0046635512 4.451545e-01 6.621971e-01 2 240726826 240726837 12 - 1.938 1.975 0.124
ENSG00000130294 E041 230.2746148 0.0002317804 4.999276e-01 7.006735e-01 2 240726838 240726940 103 - 2.274 2.254 -0.069
ENSG00000130294 E042 0.6486114 0.0191656057 7.541950e-01   2 240728389 240728412 24 - 0.223 0.166 -0.523
ENSG00000130294 E043 20.2320882 0.0022716573 3.925005e-01 6.224029e-01 2 240734719 240734745 27 - 1.296 1.217 -0.276
ENSG00000130294 E044 211.8903471 0.0010543219 4.935265e-01 6.962935e-01 2 240737063 240737168 106 - 2.243 2.220 -0.078
ENSG00000130294 E045 0.7962354 0.0180811566 2.778090e-01   2 240737169 240737542 374 - 0.369 0.166 -1.525
ENSG00000130294 E046 0.7788594 0.0497426169 3.400371e-01   2 240739556 240739669 114 - 0.000 0.249 13.071
ENSG00000130294 E047 182.9085148 0.0026694704 6.539120e-01 8.060309e-01 2 240740058 240740142 85 - 2.175 2.155 -0.065
ENSG00000130294 E048 179.1076550 0.0011051595 9.296695e-01 9.668406e-01 2 240740298 240740364 67 - 2.147 2.149 0.005
ENSG00000130294 E049 239.0916113 0.0002168249 6.437826e-01 7.993938e-01 2 240741269 240741377 109 - 2.263 2.276 0.044
ENSG00000130294 E050 189.3414707 0.0002825787 1.598946e-01 3.766301e-01 2 240742929 240742984 56 - 2.135 2.182 0.158
ENSG00000130294 E051 227.8090163 0.0002142390 4.042818e-01 6.317635e-01 2 240743942 240744052 111 - 2.232 2.257 0.083
ENSG00000130294 E052 110.7902644 0.0011900242 8.199577e-01 9.080469e-01 2 240744053 240744060 8 - 1.932 1.940 0.028
ENSG00000130294 E053 5.4957398 0.1396992513 2.671842e-01 5.068050e-01 2 240744061 240744256 196 - 0.477 0.760 1.246
ENSG00000130294 E054 4.4302917 0.2749630964 2.644471e-01 5.036809e-01 2 240744257 240744334 78 - 0.800 0.603 -0.819
ENSG00000130294 E055 10.0428046 0.1435736178 4.946639e-01 6.972031e-01 2 240744335 240744687 353 - 1.015 0.925 -0.335
ENSG00000130294 E056 213.1213404 0.0003090578 7.151934e-01 8.450803e-01 2 240745427 240745517 91 - 2.213 2.223 0.036
ENSG00000130294 E057 259.9988584 0.0002394793 7.747419e-01 8.816025e-01 2 240745738 240745906 169 - 2.303 2.310 0.025
ENSG00000130294 E058 90.9194658 0.0005586186 4.279769e-01 6.494535e-01 2 240745907 240745909 3 - 1.824 1.862 0.127
ENSG00000130294 E059 219.6684608 0.0015094011 1.303778e-01 3.324002e-01 2 240746039 240746177 139 - 2.191 2.244 0.177
ENSG00000130294 E060 0.1723744 0.0328037018 1.000000e+00   2 240746440 240746471 32 - 0.000 0.063 10.929
ENSG00000130294 E061 0.1723744 0.0328037018 1.000000e+00   2 240746944 240747001 58 - 0.000 0.063 10.929
ENSG00000130294 E062 181.3772826 0.0003393421 9.452283e-01 9.748966e-01 2 240747236 240747321 86 - 2.156 2.152 -0.011
ENSG00000130294 E063 0.0000000       2 240748665 240748718 54 -      
ENSG00000130294 E064 217.9704370 0.0011972561 4.161468e-02 1.589145e-01 2 240750429 240750547 119 - 2.288 2.216 -0.238
ENSG00000130294 E065 0.0000000       2 240755812 240755835 24 -      
ENSG00000130294 E066 16.5576589 0.0020908107 7.600141e-01 8.725469e-01 2 240757319 240757594 276 - 1.116 1.148 0.113
ENSG00000130294 E067 1.5168327 0.0121989077 4.521076e-01 6.672599e-01 2 240757730 240758359 630 - 0.223 0.379 1.057
ENSG00000130294 E068 240.5964296 0.0017798289 1.271444e-02 6.930078e-02 2 240758360 240758497 138 - 2.344 2.255 -0.295
ENSG00000130294 E069 258.9559734 0.0013168365 4.525545e-02 1.682492e-01 2 240760665 240760843 179 - 2.358 2.292 -0.220
ENSG00000130294 E070 236.3907146 0.0008228043 9.869278e-02 2.795294e-01 2 240761229 240761377 149 - 2.309 2.256 -0.177
ENSG00000130294 E071 195.1834866 0.0002283849 5.523460e-01 7.379401e-01 2 240762719 240762812 94 - 2.202 2.182 -0.066
ENSG00000130294 E072 162.9371538 0.0004299469 5.296893e-01 7.218391e-01 2 240763019 240763091 73 - 2.126 2.103 -0.078
ENSG00000130294 E073 261.3477235 0.0002641668 1.541495e-01 3.682397e-01 2 240763166 240763346 181 - 2.343 2.302 -0.136
ENSG00000130294 E074 178.8888993 0.0025848215 9.406065e-02 2.712642e-01 2 240765710 240765793 84 - 2.201 2.130 -0.235
ENSG00000130294 E075 226.6610885 0.0023165856 8.878595e-04 8.996896e-03 2 240766915 240767021 107 - 2.345 2.222 -0.410
ENSG00000130294 E076 181.8529157 0.0022001785 1.294651e-06 3.554753e-05 2 240767266 240767345 80 - 2.297 2.114 -0.613
ENSG00000130294 E077 170.9213601 0.0016079443 1.067791e-04 1.580266e-03 2 240769133 240769208 76 - 2.240 2.095 -0.488
ENSG00000130294 E078 145.0136451 0.0019990332 9.418635e-03 5.560967e-02 2 240769627 240769669 43 - 2.143 2.033 -0.367
ENSG00000130294 E079 135.2918370 0.0046491225 7.277110e-02 2.303358e-01 2 240769670 240769706 37 - 2.099 2.007 -0.307
ENSG00000130294 E080 0.6368449 0.0189075586 4.557823e-01   2 240769707 240769742 36 - 0.000 0.210 13.121
ENSG00000130294 E081 0.0000000       2 240769895 240769923 29 -      
ENSG00000130294 E082 99.5523981 0.0009562078 6.907091e-02 2.229133e-01 2 240770971 240770975 5 - 1.961 1.878 -0.280
ENSG00000130294 E083 169.2327492 0.0003629695 3.307206e-02 1.362674e-01 2 240770976 240771044 69 - 2.183 2.110 -0.246
ENSG00000130294 E084 135.4315521 0.0004000318 4.398245e-03 3.136812e-02 2 240771045 240771080 36 - 2.113 2.006 -0.360
ENSG00000130294 E085 105.1661220 0.0009836273 1.515613e-02 7.866847e-02 2 240771081 240771104 24 - 2.004 1.896 -0.360
ENSG00000130294 E086 0.8098394 0.0225616884 9.748869e-01   2 240771105 240771179 75 - 0.223 0.210 -0.108
ENSG00000130294 E087 0.0000000       2 240771180 240771304 125 -      
ENSG00000130294 E088 0.0000000       2 240772570 240772596 27 -      
ENSG00000130294 E089 218.8911029 0.0002369996 2.577879e-05 4.735351e-04 2 240773114 240773256 143 - 2.333 2.211 -0.410
ENSG00000130294 E090 162.6505514 0.0013989215 8.972450e-06 1.910871e-04 2 240774183 240774261 79 - 2.237 2.074 -0.545
ENSG00000130294 E091 1.4559931 0.3182712387 3.838168e-01 6.154197e-01 2 240774535 240775041 507 - 0.476 0.288 -1.082
ENSG00000130294 E092 1.6048344 0.2838370757 6.241660e-01 7.867394e-01 2 240775042 240775167 126 - 0.225 0.377 1.032
ENSG00000130294 E093 0.4756169 0.0279779212 6.660974e-01   2 240775168 240775299 132 - 0.000 0.166 12.568
ENSG00000130294 E094 0.0000000       2 240775300 240775327 28 -      
ENSG00000130294 E095 1.0994779 0.0234936827 5.383603e-01   2 240775328 240775850 523 - 0.369 0.249 -0.790
ENSG00000130294 E096 171.0885020 0.0041964888 4.223356e-03 3.039467e-02 2 240775851 240775926 76 - 2.230 2.104 -0.424
ENSG00000130294 E097 0.1723744 0.0328037018 1.000000e+00   2 240775927 240776183 257 - 0.000 0.063 10.929
ENSG00000130294 E098 0.3206185 0.0274424043 1.783066e-02   2 240778042 240778062 21 - 0.369 0.000 -14.963
ENSG00000130294 E099 0.3447487 0.4455455593 1.000000e+00   2 240780517 240780660 144 - 0.000 0.119 10.899
ENSG00000130294 E100 0.4756169 0.0279779212 6.660974e-01   2 240781787 240781938 152 - 0.000 0.166 12.568
ENSG00000130294 E101 0.1723744 0.0328037018 1.000000e+00   2 240782046 240782120 75 - 0.000 0.063 10.929
ENSG00000130294 E102 0.0000000       2 240782338 240782589 252 -      
ENSG00000130294 E103 124.0223976 0.0087689188 4.771182e-02 1.743274e-01 2 240782590 240782607 18 - 2.083 1.967 -0.388
ENSG00000130294 E104 153.8293590 0.0076860595 2.084330e-02 9.882658e-02 2 240783044 240783106 63 - 2.184 2.058 -0.420
ENSG00000130294 E105 83.0196010 0.0180783906 7.408961e-02 2.329141e-01 2 240783107 240783109 3 - 1.932 1.789 -0.480
ENSG00000130294 E106 166.7746675 0.0064316503 2.398528e-03 1.967470e-02 2 240783739 240783816 78 - 2.240 2.085 -0.520
ENSG00000130294 E107 195.8419785 0.0037449593 2.250902e-05 4.228483e-04 2 240784989 240785100 112 - 2.326 2.148 -0.594
ENSG00000130294 E108 128.1240149 0.0081117945 5.626704e-04 6.244568e-03 2 240786335 240786363 29 - 2.156 1.959 -0.661
ENSG00000130294 E109 203.1179393 0.0148333874 1.790929e-02 8.873016e-02 2 240786364 240786513 150 - 2.326 2.168 -0.528
ENSG00000130294 E110 140.6130902 0.0237741422 3.134910e-02 1.313570e-01 2 240787251 240787316 66 - 2.186 2.003 -0.614
ENSG00000130294 E111 148.3260590 0.0148047873 1.216091e-02 6.711208e-02 2 240788051 240788116 66 - 2.202 2.027 -0.584
ENSG00000130294 E112 180.3030823 0.0048913302 2.257674e-05 4.238862e-04 2 240788117 240788230 114 - 2.300 2.106 -0.650
ENSG00000130294 E113 0.0000000       2 240788380 240788508 129 -      
ENSG00000130294 E114 141.8223373 0.0033794419 2.472152e-05 4.572296e-04 2 240789236 240789303 68 - 2.191 2.003 -0.631
ENSG00000130294 E115 84.9362480 0.0041637548 1.377776e-03 1.274518e-02 2 240789304 240789312 9 - 1.962 1.787 -0.587
ENSG00000130294 E116 0.3503582 0.0268920957 2.882836e-01   2 240796960 240797047 88 - 0.223 0.063 -2.110
ENSG00000130294 E117 154.8980096 0.0018833565 8.741134e-04 8.884108e-03 2 240797647 240797812 166 - 2.189 2.056 -0.446
ENSG00000130294 E118 0.0000000       2 240797935 240798033 99 -      
ENSG00000130294 E119 0.0000000       2 240818668 240818742 75 -      
ENSG00000130294 E120 0.1308682 0.0326491905 1.000000e+00   2 240818743 240818978 236 - 0.000 0.063 10.926
ENSG00000130294 E121 0.0000000       2 240819106 240819136 31 -      
ENSG00000130294 E122 0.0000000       2 240819348 240819673 326 -      
ENSG00000130294 E123 65.0961053 0.0005687791 8.684359e-01 9.350773e-01 2 240820122 240820372 251 - 1.721 1.711 -0.033
ENSG00000130294 E124 0.4341107 0.0244411696 6.706224e-01   2 240820916 240821036 121 - 0.000 0.166 12.615
ENSG00000130294 E125 0.0000000       2 240821340 240821413 74 -      
ENSG00000130294 E126 0.0000000       2 240824123 240824293 171 -