ENSG00000127914

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356239 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding protein_coding 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.9899462 0.00000000 3.0870845 0.00000000 0.5728978 8.2747669 0.10735417 0.000000000 0.27153333 0.27153333 8.216243e-10 8.216243e-10 FALSE TRUE
ENST00000394534 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding protein_coding 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.3995066 0.53961548 0.6404703 0.31565936 0.6404703 0.2430605 0.07562500 0.139300000 0.05480000 -0.08450000 6.634085e-01 8.216243e-10 FALSE TRUE
ENST00000486313 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding protein_coding 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.3120484 0.00000000 0.0000000 0.00000000 0.0000000 0.0000000 0.10479167 0.000000000 0.00000000 0.00000000   8.216243e-10 FALSE TRUE
ENST00000487258 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding retained_intron 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.5879527 1.15362864 0.2445372 0.20525521 0.1443067 -2.1926823 0.13715000 0.288900000 0.02186667 -0.26703333 1.565773e-02 8.216243e-10 FALSE TRUE
ENST00000680365 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding nonsense_mediated_decay 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.9751906 0.87881615 1.2387943 0.55564701 0.6708041 0.4905789 0.16156667 0.207100000 0.11163333 -0.09546667 9.598537e-01 8.216243e-10 TRUE TRUE
ENST00000680513 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding protein_coding 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.7130032 0.14541257 1.6980311 0.07924608 0.3370668 3.4581591 0.08148750 0.035100000 0.14973333 0.11463333 1.884855e-01 8.216243e-10 FALSE TRUE
ENST00000681412 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding protein_coding 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.3134123 0.25877342 0.5356840 0.12982451 0.1399842 1.0216752 0.05737917 0.063766667 0.04773333 -0.01603333 1.000000e+00 8.216243e-10 FALSE TRUE
ENST00000681722 ENSG00000127914 HEK293_OSMI2_6hA HEK293_TMG_6hB AKAP9 protein_coding protein_coding 6.261115 4.055361 11.31959 0.1522545 0.2038791 1.47864 0.3000741 0.02788502 0.7579736 0.02788502 0.1795754 4.3413572 0.03415417 0.006433333 0.06646667 0.06003333 6.796151e-02 8.216243e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000127914 E001 0.1426347 0.0325796299 1.000000e+00   7 91940840 91940859 20 + 0.069 0.000 -8.543
ENSG00000127914 E002 0.1426347 0.0325796299 1.000000e+00   7 91940860 91940861 2 + 0.069 0.000 -11.212
ENSG00000127914 E003 0.1426347 0.0325796299 1.000000e+00   7 91940862 91940869 8 + 0.069 0.000 -11.212
ENSG00000127914 E004 0.4929928 0.0217681645 6.730614e-01   7 91940870 91940874 5 + 0.128 0.206 0.822
ENSG00000127914 E005 3.2395425 0.0144902765 3.766529e-01 6.095905e-01 7 91940875 91940877 3 + 0.593 0.450 -0.684
ENSG00000127914 E006 5.9734682 0.0753452904 2.365366e-01 4.725841e-01 7 91940878 91940915 38 + 0.814 0.606 -0.859
ENSG00000127914 E007 6.7242035 0.0329172157 9.985362e-02 2.814887e-01 7 91940916 91940925 10 + 0.866 0.606 -1.065
ENSG00000127914 E008 11.9759951 0.0220453253 1.888017e-01 4.154998e-01 7 91940926 91941005 80 + 1.072 0.918 -0.571
ENSG00000127914 E009 13.3526886 0.0023943029 9.861110e-03 5.752979e-02 7 91941006 91941078 73 + 1.137 0.849 -1.067
ENSG00000127914 E010 9.6410203 0.0033909910 2.541536e-02 1.134863e-01 7 91941079 91941099 21 + 1.004 0.720 -1.100
ENSG00000127914 E011 12.0577241 0.0031135037 6.275682e-03 4.107589e-02 7 91941100 91941147 48 + 1.097 0.767 -1.246
ENSG00000127914 E012 0.0000000       7 91970473 91970508 36 +      
ENSG00000127914 E013 25.7609628 0.0021976754 9.314640e-08 3.483462e-06 7 91973711 91973968 258 + 1.422 0.885 -1.930
ENSG00000127914 E014 0.0000000       7 91979436 91979574 139 +      
ENSG00000127914 E015 13.5160747 0.0027682085 4.356970e-04 5.087765e-03 7 91980289 91980333 45 + 1.153 0.720 -1.639
ENSG00000127914 E016 0.0000000       7 91980873 91980958 86 +      
ENSG00000127914 E017 14.6523503 0.0024479659 2.436089e-05 4.518885e-04 7 91992158 91992211 54 + 1.197 0.666 -2.020
ENSG00000127914 E018 26.7018474 0.0014328564 5.007293e-08 1.998133e-06 7 91992885 91993055 171 + 1.444 0.918 -1.880
ENSG00000127914 E019 25.3392507 0.0114446372 5.185034e-06 1.188792e-04 7 91994621 91994776 156 + 1.417 0.918 -1.786
ENSG00000127914 E020 27.9118121 0.0091489026 3.418672e-07 1.107323e-05 7 91995603 91995800 198 + 1.458 0.918 -1.930
ENSG00000127914 E021 0.3228314 0.4283994833 1.000000e+00   7 91995801 91996052 252 + 0.129 0.000 -11.115
ENSG00000127914 E022 227.1049177 0.0005527588 1.733556e-32 1.741998e-29 7 92000848 92003235 2388 + 2.342 1.963 -1.266
ENSG00000127914 E023 27.9346770 0.0080782760 6.714283e-02 2.187111e-01 7 92012429 92012500 72 + 1.413 1.270 -0.501
ENSG00000127914 E024 38.8972315 0.0043092814 6.394713e-04 6.914800e-03 7 92012501 92012642 142 + 1.569 1.323 -0.849
ENSG00000127914 E025 21.3222491 0.0015521724 1.200168e-02 6.645022e-02 7 92014249 92014328 80 + 1.313 1.098 -0.764
ENSG00000127914 E026 29.7814955 0.0172010361 6.123684e-03 4.032973e-02 7 92016129 92016267 139 + 1.461 1.205 -0.890
ENSG00000127914 E027 28.0697150 0.0150409266 1.973749e-03 1.689351e-02 7 92017017 92017102 86 + 1.441 1.136 -1.069
ENSG00000127914 E028 34.8772703 0.0081133213 4.956637e-03 3.440347e-02 7 92022238 92022352 115 + 1.517 1.296 -0.765
ENSG00000127914 E029 36.7040394 0.0011172819 2.384092e-03 1.958845e-02 7 92022814 92023009 196 + 1.535 1.335 -0.692
ENSG00000127914 E030 25.3942406 0.0013355481 4.307544e-03 3.087755e-02 7 92029895 92029991 97 + 1.386 1.157 -0.807
ENSG00000127914 E031 25.1308202 0.0018214424 2.874873e-02 1.236111e-01 7 92031512 92031604 93 + 1.374 1.208 -0.581
ENSG00000127914 E032 46.9595423 0.0010062315 3.245189e-05 5.771970e-04 7 92038419 92038772 354 + 1.649 1.392 -0.883
ENSG00000127914 E033 17.8028390 0.0029228568 2.380844e-03 1.956994e-02 7 92040674 92040703 30 + 1.255 0.948 -1.109
ENSG00000127914 E034 40.7081480 0.0009770054 6.339892e-04 6.873903e-03 7 92040704 92040898 195 + 1.586 1.370 -0.745
ENSG00000127914 E035 3.1378505 0.0083775203 4.360088e-01 6.558091e-01 7 92040899 92041781 883 + 0.574 0.450 -0.594
ENSG00000127914 E036 24.1250107 0.0023740731 1.064852e-01 2.931328e-01 7 92042046 92042186 141 + 1.354 1.239 -0.403
ENSG00000127914 E037 28.4778246 0.0021722018 4.190330e-02 1.596971e-01 7 92042668 92042771 104 + 1.425 1.283 -0.493
ENSG00000127914 E038 0.1779838 0.0349112246 1.000000e+00   7 92042772 92043143 372 + 0.069 0.000 -11.196
ENSG00000127914 E039 0.1614157 0.0338442586 1.000000e+00   7 92043282 92043377 96 + 0.069 0.000 -11.203
ENSG00000127914 E040 41.1925985 0.0008506479 3.030735e-03 2.359766e-02 7 92045008 92045213 206 + 1.583 1.402 -0.619
ENSG00000127914 E041 48.2942656 0.0008077753 7.481812e-05 1.173812e-03 7 92052726 92052958 233 + 1.659 1.423 -0.809
ENSG00000127914 E042 0.1779838 0.0349112246 1.000000e+00   7 92057626 92058414 789 + 0.069 0.000 -11.196
ENSG00000127914 E043 38.4239686 0.0016409640 1.327551e-03 1.236622e-02 7 92061260 92061422 163 + 1.559 1.347 -0.729
ENSG00000127914 E044 45.9665106 0.0008251413 2.263590e-04 2.960899e-03 7 92062274 92062486 213 + 1.636 1.413 -0.764
ENSG00000127914 E045 0.6487990 0.0350227435 2.528105e-01   7 92062487 92063461 975 + 0.128 0.345 1.825
ENSG00000127914 E046 0.4654660 0.0287252087 5.065937e-01   7 92063462 92063500 39 + 0.180 0.000 -12.779
ENSG00000127914 E047 0.3040503 0.0274424043 8.770162e-01   7 92063501 92065230 1730 + 0.128 0.000 -12.229
ENSG00000127914 E048 49.4848009 0.0008783954 2.579531e-03 2.084330e-02 7 92065231 92065463 233 + 1.655 1.487 -0.570
ENSG00000127914 E049 41.5793744 0.0050333711 3.034971e-01 5.440407e-01 7 92066427 92066546 120 + 1.561 1.513 -0.164
ENSG00000127914 E050 43.9861671 0.0019650597 2.849464e-01 5.255548e-01 7 92070030 92070182 153 + 1.587 1.543 -0.148
ENSG00000127914 E051 14.7734051 0.0023018113 5.709650e-02 1.962655e-01 7 92070183 92070206 24 + 1.163 0.977 -0.675
ENSG00000127914 E052 0.0000000       7 92070207 92070813 607 +      
ENSG00000127914 E053 35.9519565 0.0023503037 3.995629e-02 1.545918e-01 7 92070905 92071009 105 + 1.519 1.392 -0.439
ENSG00000127914 E054 42.6615763 0.0109055462 4.748092e-01 6.834252e-01 7 92076855 92077007 153 + 1.573 1.543 -0.100
ENSG00000127914 E055 51.3126674 0.0140836047 5.539182e-01 7.390406e-01 7 92077696 92077875 180 + 1.650 1.634 -0.055
ENSG00000127914 E056 168.2666089 0.0035638921 2.488244e-01 4.866138e-01 7 92079079 92080152 1074 + 2.157 2.138 -0.066
ENSG00000127914 E057 44.3436325 0.0008266013 4.888647e-01 6.932088e-01 7 92082522 92082662 141 + 1.583 1.566 -0.059
ENSG00000127914 E058 38.3288867 0.0011097665 1.823396e-01 4.070439e-01 7 92083170 92083280 111 + 1.535 1.470 -0.224
ENSG00000127914 E059 51.6845260 0.0006953308 7.158290e-01 8.454941e-01 7 92083281 92083436 156 + 1.644 1.650 0.019
ENSG00000127914 E060 66.3472468 0.0005391682 8.054082e-01 8.993565e-01 7 92083437 92083655 219 + 1.742 1.781 0.131
ENSG00000127914 E061 37.3963680 0.0031637317 2.308397e-01 4.661343e-01 7 92084640 92084703 64 + 1.480 1.587 0.365
ENSG00000127914 E062 42.9886447 0.0154765378 1.902414e-01 4.172731e-01 7 92084819 92084940 122 + 1.537 1.665 0.439
ENSG00000127914 E063 41.1820739 0.1064435409 2.654004e-01 5.047738e-01 7 92085495 92085686 192 + 1.508 1.671 0.557
ENSG00000127914 E064 0.2735028 0.0263775601 3.778169e-01   7 92085824 92085872 49 + 0.069 0.206 1.820
ENSG00000127914 E065 46.8407337 0.0017770851 1.100511e-01 2.990921e-01 7 92086228 92086416 189 + 1.575 1.695 0.408
ENSG00000127914 E066 50.7886382 0.0008232435 5.492788e-02 1.911832e-01 7 92089385 92089529 145 + 1.607 1.740 0.450
ENSG00000127914 E067 17.3279314 0.0286682628 6.410038e-01 7.975131e-01 7 92089530 92091458 1929 + 1.195 1.174 -0.074
ENSG00000127914 E068 3.0806294 0.0741733442 6.653544e-01 8.132758e-01 7 92091661 92091988 328 + 0.512 0.611 0.451
ENSG00000127914 E069 8.7801645 0.0526229355 1.827370e-01 4.075935e-01 7 92091989 92092673 685 + 0.846 1.085 0.889
ENSG00000127914 E070 4.7770456 0.0402174899 1.073903e-01 2.946688e-01 7 92092674 92092928 255 + 0.611 0.889 1.128
ENSG00000127914 E071 3.9957627 0.0086128759 5.304899e-03 3.621539e-02 7 92092929 92093096 168 + 0.486 0.919 1.823
ENSG00000127914 E072 71.3926353 0.0020631100 2.610897e-02 1.156741e-01 7 92093097 92093316 220 + 1.748 1.888 0.470
ENSG00000127914 E073 65.3919402 0.0007116318 3.355829e-03 2.551245e-02 7 92095023 92095173 151 + 1.698 1.868 0.572
ENSG00000127914 E074 0.1723744 0.0310410456 1.329631e-01   7 92095511 92095656 146 + 0.000 0.206 12.718
ENSG00000127914 E075 60.7883417 0.0006296805 4.773438e-04 5.471489e-03 7 92096689 92096856 168 + 1.661 1.861 0.675
ENSG00000127914 E076 131.4811900 0.0020644157 4.927818e-05 8.214142e-04 7 92096857 92097357 501 + 1.999 2.184 0.617
ENSG00000127914 E077 58.5753280 0.0060123990 1.525247e-01 3.659724e-01 7 92097586 92097699 114 + 1.674 1.791 0.395
ENSG00000127914 E078 48.1039772 0.0007727259 1.206327e-01 3.168592e-01 7 92097700 92097794 95 + 1.585 1.700 0.392
ENSG00000127914 E079 33.9711646 0.0009896430 2.107324e-02 9.958593e-02 7 92098109 92098153 45 + 1.422 1.600 0.611
ENSG00000127914 E080 45.1899232 0.0008855953 7.342238e-02 2.316460e-01 7 92098154 92098214 61 + 1.552 1.684 0.448
ENSG00000127914 E081 0.5008152 0.0373829842 5.070166e-01   7 92098215 92099686 1472 + 0.181 0.000 -12.716
ENSG00000127914 E082 70.9043576 0.0006149828 2.439902e-04 3.153360e-03 7 92099687 92099869 183 + 1.729 1.924 0.660
ENSG00000127914 E083 1.7317317 0.0864134990 7.688497e-01 8.779373e-01 7 92099870 92100855 986 + 0.403 0.347 -0.320
ENSG00000127914 E084 72.6940691 0.0007055388 3.082499e-09 1.618174e-07 7 92100856 92101056 201 + 1.709 1.999 0.979
ENSG00000127914 E085 48.3532966 0.0019906638 2.862691e-09 1.516481e-07 7 92102594 92102686 93 + 1.504 1.861 1.211
ENSG00000127914 E086 56.4873624 0.0207710857 2.058200e-06 5.353496e-05 7 92102687 92102826 140 + 1.549 1.958 1.383
ENSG00000127914 E087 37.5196421 0.0165110440 2.091417e-06 5.428275e-05 7 92105678 92105763 86 + 1.375 1.788 1.410
ENSG00000127914 E088 63.8507997 0.0047614891 4.167997e-08 1.692948e-06 7 92107293 92107422 130 + 1.635 1.963 1.108
ENSG00000127914 E089 3.9159205 0.5180007429 3.749810e-01 6.081597e-01 7 92107423 92107929 507 + 0.597 0.712 0.489
ENSG00000127914 E090 71.1312778 0.0226896819 9.703783e-05 1.458212e-03 7 92108494 92108633 140 + 1.677 2.017 1.144
ENSG00000127914 E091 34.9999418 0.0010100482 1.110654e-05 2.297376e-04 7 92108634 92110121 1488 + 1.393 1.695 1.034
ENSG00000127914 E092 92.1491663 0.0352220084 1.313657e-04 1.877696e-03 7 92110122 92110673 552 + 1.771 2.155 1.293