ENSG00000126883

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000359428 ENSG00000126883 HEK293_OSMI2_6hA HEK293_TMG_6hB NUP214 protein_coding protein_coding 27.28923 36.64529 19.39256 3.911404 0.6408057 -0.9177744 10.584808 17.233501 11.6339810 2.8667458 0.52537017 -0.5664683 0.4165042 0.4634333 0.5996000 0.1361667 1.517730e-01 8.06812e-14 FALSE TRUE
ENST00000411637 ENSG00000126883 HEK293_OSMI2_6hA HEK293_TMG_6hB NUP214 protein_coding protein_coding 27.28923 36.64529 19.39256 3.911404 0.6408057 -0.9177744 3.450607 4.693255 3.4571489 0.3528145 0.23301440 -0.4399096 0.1385958 0.1293667 0.1794667 0.0501000 4.421641e-01 8.06812e-14 FALSE TRUE
ENST00000695500 ENSG00000126883 HEK293_OSMI2_6hA HEK293_TMG_6hB NUP214 protein_coding retained_intron 27.28923 36.64529 19.39256 3.911404 0.6408057 -0.9177744 4.549676 6.944131 0.1624437 1.5518716 0.03396467 -5.3336727 0.1347042 0.1844000 0.0083000 -0.1761000 8.068120e-14 8.06812e-14 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000126883 E001 2.9824385 0.0118742102 4.803493e-01 6.873182e-01 9 131125573 131125585 13 + 0.632 0.537 -0.431
ENSG00000126883 E002 3.9344800 0.0061919851 5.003262e-01 7.009661e-01 9 131125586 131125593 8 + 0.718 0.636 -0.346
ENSG00000126883 E003 5.6482156 0.0051645903 1.503333e-01 3.627612e-01 9 131125594 131125595 2 + 0.905 0.735 -0.666
ENSG00000126883 E004 95.6448553 0.0154090677 1.407302e-02 7.463628e-02 9 131125596 131125738 143 + 2.050 1.902 -0.497
ENSG00000126883 E005 68.4253569 0.0161506269 2.482477e-02 1.116929e-01 9 131125739 131125749 11 + 1.905 1.761 -0.487
ENSG00000126883 E006 0.1308682 0.0308654210 1.000000e+00   9 131125973 131126079 107 + 0.000 0.087 10.506
ENSG00000126883 E007 0.1308682 0.0308654210 1.000000e+00   9 131126080 131126093 14 + 0.000 0.087 10.506
ENSG00000126883 E008 0.0000000       9 131126094 131126194 101 +      
ENSG00000126883 E009 0.0000000       9 131126412 131126460 49 +      
ENSG00000126883 E010 87.8681466 0.0124515220 5.663629e-03 3.805850e-02 9 131127524 131127576 53 + 2.019 1.863 -0.525
ENSG00000126883 E011 117.2979280 0.0010830813 2.241793e-05 4.213236e-04 9 131127577 131127719 143 + 2.128 1.997 -0.440
ENSG00000126883 E012 140.7970487 0.0003536278 1.715872e-09 9.588500e-08 9 131128332 131128483 152 + 2.227 2.061 -0.554
ENSG00000126883 E013 0.0000000       9 131128528 131128808 281 +      
ENSG00000126883 E014 176.5861882 0.0016935088 2.196242e-10 1.448436e-08 9 131129279 131129477 199 + 2.339 2.149 -0.634
ENSG00000126883 E015 114.5148380 0.0125318852 8.041026e-02 2.456779e-01 9 131130766 131130836 71 + 2.098 1.997 -0.338
ENSG00000126883 E016 97.5092545 0.0803564433 9.672336e-01 9.855846e-01 9 131132596 131132659 64 + 1.980 1.955 -0.086
ENSG00000126883 E017 98.6009834 0.7701584260 5.220988e-01 7.163815e-01 9 131133106 131133196 91 + 1.919 1.988 0.231
ENSG00000126883 E018 69.2000957 0.6814728555 5.803101e-01 7.573778e-01 9 131133197 131133209 13 + 1.799 1.822 0.077
ENSG00000126883 E019 133.4240568 0.0141522452 3.090259e-02 1.300548e-01 9 131134898 131135004 107 + 2.185 2.053 -0.443
ENSG00000126883 E020 1.0067919 0.0155724090 3.369653e-01   9 131135005 131135725 721 + 0.382 0.221 -1.083
ENSG00000126883 E021 0.1308682 0.0308654210 1.000000e+00   9 131135726 131135881 156 + 0.000 0.087 10.506
ENSG00000126883 E022 0.0000000       9 131135882 131135939 58 +      
ENSG00000126883 E023 99.2792947 0.0004587155 8.101360e-11 5.851966e-09 9 131135940 131135987 48 + 2.108 1.893 -0.723
ENSG00000126883 E024 85.0978987 0.0024592513 1.773946e-09 9.874038e-08 9 131135988 131136006 19 + 2.059 1.814 -0.823
ENSG00000126883 E025 154.9777267 0.0051604269 4.982763e-06 1.147996e-04 9 131139281 131139407 127 + 2.279 2.095 -0.615
ENSG00000126883 E026 148.4967941 0.0063702552 3.769983e-04 4.506440e-03 9 131140549 131140710 162 + 2.240 2.089 -0.507
ENSG00000126883 E027 2.0653111 0.0409826470 9.770608e-01 9.902823e-01 9 131140711 131142981 2271 + 0.458 0.476 0.091
ENSG00000126883 E028 162.1309225 0.0002906021 3.899325e-05 6.739214e-04 9 131144280 131144567 288 + 2.248 2.151 -0.326
ENSG00000126883 E029 46.0459326 0.0009143925 3.451800e-03 2.605427e-02 9 131144568 131144576 9 + 1.733 1.597 -0.460
ENSG00000126883 E030 109.1523255 0.0004843550 5.080002e-03 3.505046e-02 9 131144577 131144701 125 + 2.066 1.988 -0.261
ENSG00000126883 E031 89.1122501 0.0016296526 7.409414e-02 2.329141e-01 9 131144702 131144754 53 + 1.960 1.906 -0.180
ENSG00000126883 E032 8.6704691 0.2003199906 7.333939e-02 2.314744e-01 9 131144755 131145340 586 + 1.156 0.819 -1.250
ENSG00000126883 E033 54.7985003 0.0008340232 2.039329e-01 4.345629e-01 9 131146129 131146161 33 + 1.744 1.703 -0.140
ENSG00000126883 E034 56.0115469 0.0127765484 3.192704e-01 5.589865e-01 9 131146162 131146164 3 + 1.758 1.709 -0.167
ENSG00000126883 E035 172.1612634 0.0070809951 9.903791e-02 2.800784e-01 9 131146165 131146304 140 + 2.244 2.187 -0.192
ENSG00000126883 E036 20.3479695 0.0036731169 2.370328e-03 1.950556e-02 9 131147487 131147489 3 + 1.436 1.213 -0.780
ENSG00000126883 E037 166.0948338 0.0003285737 5.086786e-04 5.759022e-03 9 131147490 131147584 95 + 2.246 2.167 -0.264
ENSG00000126883 E038 0.0000000       9 131149951 131150100 150 +      
ENSG00000126883 E039 170.8839130 0.0005956233 1.247867e-03 1.177641e-02 9 131150324 131150410 87 + 2.254 2.180 -0.246
ENSG00000126883 E040 222.5234306 0.0008962095 1.792429e-04 2.440632e-03 9 131150616 131150765 150 + 2.373 2.291 -0.271
ENSG00000126883 E041 216.4686693 0.0206204530 9.851381e-01 9.943525e-01 9 131151736 131151894 159 + 2.302 2.308 0.022
ENSG00000126883 E042 180.0670748 1.2507044938 6.113197e-01 7.777954e-01 9 131159383 131159486 104 + 2.194 2.240 0.153
ENSG00000126883 E043 181.7614374 1.2408027602 5.888255e-01 7.628706e-01 9 131162991 131163099 109 + 2.183 2.251 0.227
ENSG00000126883 E044 148.3852218 1.1290552276 5.143057e-01 7.111948e-01 9 131163100 131163173 74 + 2.055 2.178 0.410
ENSG00000126883 E045 173.4578372 0.0326540791 8.557036e-01 9.280744e-01 9 131163870 131163955 86 + 2.203 2.215 0.038
ENSG00000126883 E046 174.4573312 0.0089237861 8.463396e-01 9.229380e-01 9 131164061 131164144 84 + 2.211 2.217 0.018
ENSG00000126883 E047 0.0000000       9 131164145 131164549 405 +      
ENSG00000126883 E048 180.4963695 0.0040622275 1.599047e-01 3.766313e-01 9 131174055 131174167 113 + 2.254 2.221 -0.111
ENSG00000126883 E049 188.9378770 0.0006132388 2.323657e-01 4.679582e-01 9 131174168 131174318 151 + 2.259 2.249 -0.036
ENSG00000126883 E050 180.8854467 0.0064423852 4.442452e-01 6.615606e-01 9 131175460 131175621 162 + 2.235 2.226 -0.028
ENSG00000126883 E051 0.8923043 0.3121461177 7.249333e-01   9 131175622 131175719 98 + 0.292 0.225 -0.497
ENSG00000126883 E052 0.0000000       9 131175720 131175795 76 +      
ENSG00000126883 E053 0.6120945 0.0202668923 8.142281e-01   9 131175796 131177572 1777 + 0.167 0.221 0.498
ENSG00000126883 E054 110.0800205 0.0063169082 3.636384e-01 5.987164e-01 9 131178311 131178348 38 + 2.029 2.007 -0.074
ENSG00000126883 E055 146.4754070 0.0068679932 4.499632e-01 6.656593e-01 9 131178349 131178410 62 + 2.144 2.133 -0.039
ENSG00000126883 E056 2.3085561 0.0144058312 3.228827e-02 1.340888e-01 9 131184373 131187288 2916 + 0.167 0.590 2.621
ENSG00000126883 E057 108.1943433 0.0007095144 9.142842e-01 9.592544e-01 9 131187289 131187311 23 + 1.992 2.012 0.066
ENSG00000126883 E058 137.6915433 0.0003172873 3.251623e-01 5.643854e-01 9 131187312 131187357 46 + 2.072 2.128 0.188
ENSG00000126883 E059 91.8274714 0.0004555185 1.225380e-01 3.198292e-01 9 131187358 131187364 7 + 1.879 1.965 0.290
ENSG00000126883 E060 160.3054520 0.0049245713 2.899106e-02 1.243317e-01 9 131189053 131189131 79 + 2.094 2.211 0.394
ENSG00000126883 E061 0.2027342 0.0383266882 1.000000e+00   9 131190121 131190125 5 + 0.000 0.087 10.513
ENSG00000126883 E062 0.2027342 0.0383266882 1.000000e+00   9 131190126 131190138 13 + 0.000 0.087 10.513
ENSG00000126883 E063 0.2027342 0.0383266882 1.000000e+00   9 131190139 131190142 4 + 0.000 0.087 10.513
ENSG00000126883 E064 0.2027342 0.0383266882 1.000000e+00   9 131190143 131190172 30 + 0.000 0.087 10.513
ENSG00000126883 E065 0.3336024 0.0244411696 5.276683e-01   9 131190173 131190480 308 + 0.000 0.159 11.509
ENSG00000126883 E066 0.4341107 0.0244411696 3.021381e-01   9 131192124 131192207 84 + 0.000 0.221 12.090
ENSG00000126883 E067 133.4748393 1.0375549984 4.190551e-01 6.429060e-01 9 131192208 131192292 85 + 1.954 2.150 0.659
ENSG00000126883 E068 0.3447487 0.5621746593 6.777289e-01   9 131192293 131192767 475 + 0.000 0.162 11.540
ENSG00000126883 E069 125.7626263 0.0125750566 2.765843e-01 5.165585e-01 9 131195233 131195294 62 + 2.016 2.098 0.274
ENSG00000126883 E070 5.4581637 0.3462515760 4.104278e-01 6.363949e-01 9 131195295 131195658 364 + 0.853 0.750 -0.409
ENSG00000126883 E071 4.7456630 0.2085985296 9.659727e-01 9.848764e-01 9 131196885 131197215 331 + 0.680 0.748 0.280
ENSG00000126883 E072 208.5714831 0.0003150401 6.342915e-01 7.931196e-01 9 131197216 131197337 122 + 2.267 2.303 0.121
ENSG00000126883 E073 166.7901526 0.0002627614 7.541053e-01 8.691998e-01 9 131197338 131197416 79 + 2.171 2.204 0.110
ENSG00000126883 E074 447.0420067 0.0016500277 6.614314e-01 8.108125e-01 9 131197417 131197886 470 + 2.594 2.630 0.121
ENSG00000126883 E075 128.9981543 0.0043366856 6.307606e-01 7.908747e-01 9 131197887 131197918 32 + 2.052 2.099 0.158
ENSG00000126883 E076 486.8170288 0.0068858486 4.850779e-01 6.906451e-01 9 131197919 131198451 533 + 2.617 2.674 0.190
ENSG00000126883 E077 671.5305660 0.0092311074 1.966297e-01 4.253305e-01 9 131198452 131199015 564 + 2.733 2.822 0.298
ENSG00000126883 E078 293.4988576 0.0124830506 2.264674e-01 4.611712e-01 9 131201647 131201717 71 + 2.366 2.466 0.334
ENSG00000126883 E079 7.9299553 0.1070026452 4.852503e-01 6.907227e-01 9 131212657 131215211 2555 + 0.792 0.964 0.662
ENSG00000126883 E080 418.8005123 0.0107095795 2.736499e-01 5.135255e-01 9 131215212 131215368 157 + 2.527 2.617 0.301
ENSG00000126883 E081 1.0590692 0.0162677137 4.317538e-01   9 131222498 131222777 280 + 0.167 0.324 1.241
ENSG00000126883 E082 353.4009637 0.0107118218 1.256261e-01 3.248499e-01 9 131222778 131222930 153 + 2.436 2.551 0.384
ENSG00000126883 E083 115.6863614 0.0095556342 1.447282e-01 3.545354e-01 9 131228160 131228174 15 + 1.950 2.072 0.407
ENSG00000126883 E084 159.0458857 0.0036686397 1.190596e-02 6.604514e-02 9 131228175 131228223 49 + 2.077 2.214 0.458
ENSG00000126883 E085 204.8375125 0.0004739932 6.801194e-05 1.082778e-03 9 131228224 131228293 70 + 2.184 2.324 0.470
ENSG00000126883 E086 188.5555908 0.0011984095 4.873410e-04 5.561196e-03 9 131228294 131228331 38 + 2.147 2.288 0.471
ENSG00000126883 E087 11.0810406 0.1385997528 6.544678e-01 8.063707e-01 9 131228518 131229662 1145 + 1.078 1.037 -0.151
ENSG00000126883 E088 3.4355314 0.1597793891 6.771297e-01 8.208918e-01 9 131229663 131229825 163 + 0.678 0.605 -0.311
ENSG00000126883 E089 14.0114636 0.1277221401 7.555992e-01 8.699761e-01 9 131229826 131230629 804 + 1.053 1.185 0.473
ENSG00000126883 E090 281.1912906 0.0025946346 3.823649e-03 2.816009e-02 9 131230630 131230769 140 + 2.331 2.457 0.422
ENSG00000126883 E091 7.7860831 0.0525249325 2.692413e-01 5.090272e-01 9 131232162 131232283 122 + 1.030 0.859 -0.640
ENSG00000126883 E092 167.0131077 0.0009361059 2.013430e-05 3.841011e-04 9 131232284 131232308 25 + 2.073 2.243 0.569
ENSG00000126883 E093 9.5783713 0.0105594132 2.101122e-01 4.419899e-01 9 131232309 131233008 700 + 1.072 0.944 -0.469
ENSG00000126883 E094 179.0328781 0.0002612702 4.315623e-05 7.342871e-04 9 131233454 131233501 48 + 2.121 2.267 0.491
ENSG00000126883 E095 168.9376022 0.0002766791 2.002775e-05 3.825411e-04 9 131233502 131233562 61 + 2.088 2.245 0.522
ENSG00000126883 E096 525.0151630 0.0167081986 8.918580e-04 9.028255e-03 9 131233563 131234663 1101 + 2.525 2.749 0.745