ENSG00000125844

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000246043 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding protein_coding 51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 17.768845 18.092498 20.104428 1.5826181 2.3675872 0.1520419 0.35290833 0.28563333 0.49386667 0.20823333 3.170646e-05 8.949317e-37 FALSE TRUE
MSTRG.20406.16 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding   51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 2.520345 1.249001 3.533580 0.2332990 1.1424600 1.4929287 0.05470833 0.01976667 0.09253333 0.07276667 1.066743e-01 8.949317e-37 FALSE TRUE
MSTRG.20406.17 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding   51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 2.753579 2.375519 2.840767 0.6809883 0.6984990 0.2570467 0.05580833 0.03623333 0.07163333 0.03540000 5.046803e-01 8.949317e-37 FALSE TRUE
MSTRG.20406.32 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding   51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 3.197119 2.560791 3.657706 0.9467200 1.6619267 0.5126658 0.06699583 0.04093333 0.09200000 0.05106667 7.115642e-01 8.949317e-37 FALSE TRUE
MSTRG.20406.37 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding   51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 4.350323 5.749653 4.876291 0.8069142 0.6961688 -0.2372421 0.09085417 0.09336667 0.12440000 0.03103333 8.297876e-01 8.949317e-37 FALSE TRUE
MSTRG.20406.38 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding   51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 5.689796 9.684067 1.450193 1.7772895 1.0003074 -2.7309431 0.10023333 0.14963333 0.03246667 -0.11716667 4.091275e-01 8.949317e-37 FALSE TRUE
MSTRG.20406.9 ENSG00000125844 HEK293_OSMI2_6hA HEK293_TMG_6hB RRBP1 protein_coding   51.41607 63.82829 40.5117 7.402239 3.161319 -0.6557273 4.433808 12.864426 0.000000 1.2281798 0.0000000 -10.3302924 0.07788750 0.20360000 0.00000000 -0.20360000 8.949317e-37 8.949317e-37 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000125844 E001 0.6082027 0.8764768473 5.938068e-01   20 17613678 17613678 1 - 0.000 0.246 9.711
ENSG00000125844 E002 21.6832561 0.0032901072 5.861105e-01 7.610359e-01 20 17613679 17613728 50 - 1.296 1.341 0.155
ENSG00000125844 E003 29.0564923 0.0115242063 3.658079e-01 6.006071e-01 20 17613729 17613822 94 - 1.396 1.470 0.255
ENSG00000125844 E004 11.4895470 0.0041461213 9.048062e-01 9.543670e-01 20 17613823 17613826 4 - 1.079 1.067 -0.042
ENSG00000125844 E005 16.6618879 0.0025452445 5.217737e-01 7.161545e-01 20 17613827 17613831 5 - 1.254 1.198 -0.198
ENSG00000125844 E006 18.4543891 0.0070879359 3.225769e-01 5.619674e-01 20 17613832 17613832 1 - 1.316 1.228 -0.309
ENSG00000125844 E007 21.5686185 0.0018540544 2.025715e-01 4.328017e-01 20 17613833 17613833 1 - 1.387 1.288 -0.342
ENSG00000125844 E008 24.6412740 0.0015300802 3.510255e-01 5.881452e-01 20 17613834 17613837 4 - 1.426 1.358 -0.233
ENSG00000125844 E009 49.8278434 0.0011121164 1.806052e-01 4.047311e-01 20 17613838 17613856 19 - 1.625 1.700 0.253
ENSG00000125844 E010 56.1776174 0.0008698183 1.697193e-01 3.901225e-01 20 17613857 17613860 4 - 1.679 1.750 0.242
ENSG00000125844 E011 91.0918020 0.0004590977 2.759187e-04 3.487907e-03 20 17613861 17613875 15 - 1.829 1.980 0.510
ENSG00000125844 E012 104.0328484 0.0004456282 3.107545e-05 5.566800e-04 20 17613876 17613900 25 - 1.876 2.040 0.551
ENSG00000125844 E013 120.7159745 0.0004391477 1.303825e-06 3.576474e-05 20 17613901 17613921 21 - 1.931 2.110 0.600
ENSG00000125844 E014 449.7760754 0.0006219543 1.277426e-11 1.079823e-09 20 17613922 17614127 206 - 2.521 2.669 0.493
ENSG00000125844 E015 356.0207403 0.0002605558 2.688509e-08 1.145723e-06 20 17614128 17614220 93 - 2.440 2.561 0.402
ENSG00000125844 E016 169.3755381 0.0039801985 2.698043e-05 4.922008e-04 20 17614737 17614739 3 - 2.071 2.254 0.614
ENSG00000125844 E017 223.2032549 0.0054072849 4.578498e-05 7.715930e-04 20 17614740 17614769 30 - 2.190 2.375 0.616
ENSG00000125844 E018 383.6609890 0.0012605806 4.726909e-13 5.168950e-11 20 17614770 17614880 111 - 2.418 2.611 0.643
ENSG00000125844 E019 352.1512275 0.0037169011 2.399091e-07 8.091775e-06 20 17615431 17615529 99 - 2.383 2.573 0.631
ENSG00000125844 E020 396.5861036 0.0037367626 5.588576e-06 1.269997e-04 20 17615926 17616009 84 - 2.454 2.618 0.547
ENSG00000125844 E021 498.7334507 0.0028544771 1.676718e-05 3.287284e-04 20 17616732 17616839 108 - 2.575 2.710 0.450
ENSG00000125844 E022 414.1637759 0.0002028882 1.177598e-05 2.412633e-04 20 17618596 17618679 84 - 2.530 2.617 0.289
ENSG00000125844 E023 10.4612276 0.1212971271 7.152304e-01 8.450895e-01 20 17618680 17619632 953 - 0.965 1.063 0.360
ENSG00000125844 E024 365.4503714 0.0003556962 5.832724e-06 1.317896e-04 20 17619633 17619728 96 - 2.469 2.569 0.332
ENSG00000125844 E025 6.1395634 0.0047625408 5.085804e-02 1.817365e-01 20 17619729 17619817 89 - 0.987 0.744 -0.938
ENSG00000125844 E026 267.3507433 0.0007951101 2.969526e-01 5.373999e-01 20 17620299 17620370 72 - 2.385 2.414 0.096
ENSG00000125844 E027 278.7832307 0.0003090535 9.150813e-01 9.596972e-01 20 17620715 17620807 93 - 2.421 2.419 -0.009
ENSG00000125844 E028 255.8074958 0.0009690251 2.361360e-01 4.720912e-01 20 17621458 17621547 90 - 2.360 2.392 0.108
ENSG00000125844 E029 314.0514843 0.0038354446 4.085086e-03 2.965087e-02 20 17621690 17621773 84 - 2.399 2.503 0.346
ENSG00000125844 E030 360.6709270 0.0081475337 3.532223e-02 1.424252e-01 20 17621855 17621947 93 - 2.463 2.561 0.327
ENSG00000125844 E031 2.5806693 0.1731235435 2.727712e-01 5.125962e-01 20 17622848 17623330 483 - 0.669 0.451 -1.010
ENSG00000125844 E032 355.5689991 0.0048263788 2.172698e-02 1.016794e-01 20 17624576 17624668 93 - 2.464 2.553 0.299
ENSG00000125844 E033 335.0123895 0.0009183483 1.948007e-04 2.618668e-03 20 17625512 17625602 91 - 2.434 2.531 0.321
ENSG00000125844 E034 165.6955967 0.0034686032 7.082917e-03 4.499971e-02 20 17627348 17627359 12 - 2.118 2.230 0.375
ENSG00000125844 E035 187.3067790 0.0034831776 2.176915e-02 1.018262e-01 20 17627360 17627382 23 - 2.185 2.278 0.311
ENSG00000125844 E036 434.6782992 0.0011926683 1.167597e-04 1.700264e-03 20 17627504 17627682 179 - 2.546 2.643 0.321
ENSG00000125844 E037 385.1463413 0.0002847797 5.921160e-05 9.625244e-04 20 17629823 17629961 139 - 2.503 2.587 0.281
ENSG00000125844 E038 384.0157953 0.0004283904 2.078428e-03 1.759107e-02 20 17633460 17633613 154 - 2.514 2.581 0.223
ENSG00000125844 E039 330.7390528 0.0019496310 1.527030e-03 1.380048e-02 20 17635546 17635664 119 - 2.429 2.524 0.315
ENSG00000125844 E040 463.5710971 0.0026172456 2.273476e-01 4.622018e-01 20 17636577 17636729 153 - 2.618 2.652 0.112
ENSG00000125844 E041 1.1242283 0.0155471852 2.600785e-01   20 17641445 17641796 352 - 0.164 0.374 1.576
ENSG00000125844 E042 430.6326164 0.0001394026 1.907572e-01 4.178377e-01 20 17641797 17641919 123 - 2.625 2.601 -0.079
ENSG00000125844 E043 444.9069768 0.0001301558 7.832377e-01 8.865413e-01 20 17642979 17643127 149 - 2.626 2.621 -0.016
ENSG00000125844 E044 146.6938034 0.0003022622 6.601223e-01 8.100611e-01 20 17658596 17658604 9 - 2.135 2.150 0.049
ENSG00000125844 E045 304.5185321 0.0002854635 1.662748e-01 3.855973e-01 20 17658605 17658689 85 - 2.481 2.450 -0.102
ENSG00000125844 E046 280.7291154 0.0012905192 6.504876e-03 4.223258e-02 20 17658690 17658748 59 - 2.475 2.398 -0.255
ENSG00000125844 E047 226.3507065 0.0013475399 1.097739e-03 1.065448e-02 20 17658749 17658770 22 - 2.394 2.295 -0.332
ENSG00000125844 E048 407.4732930 0.0013365312 2.263613e-04 2.960899e-03 20 17658771 17658898 128 - 2.645 2.550 -0.315
ENSG00000125844 E049 241.3933731 0.0002569068 1.162126e-03 1.114060e-02 20 17658899 17658920 22 - 2.410 2.331 -0.263
ENSG00000125844 E050 324.1135334 0.0007543214 1.598095e-04 2.216540e-03 20 17658921 17659087 167 - 2.544 2.454 -0.302
ENSG00000125844 E051 222.8999012 0.0204220765 4.403268e-04 5.131097e-03 20 17659088 17659244 157 - 2.491 2.207 -0.948
ENSG00000125844 E052 63.6728713 0.0005935413 8.669832e-11 6.227066e-09 20 17659245 17659274 30 - 1.958 1.667 -0.982
ENSG00000125844 E053 60.9098490 0.0005760436 4.405047e-15 6.776072e-13 20 17659275 17659297 23 - 1.971 1.613 -1.209
ENSG00000125844 E054 67.3503034 0.0006297802 1.680977e-16 3.126710e-14 20 17659298 17659304 7 - 2.013 1.652 -1.219
ENSG00000125844 E055 85.5315089 0.0016141600 1.059505e-20 3.394873e-18 20 17659305 17659343 39 - 2.133 1.737 -1.330
ENSG00000125844 E056 72.1534340 0.0007178584 2.099862e-20 6.531224e-18 20 17659344 17659364 21 - 2.059 1.663 -1.335
ENSG00000125844 E057 69.8324819 0.0046407585 1.789233e-13 2.117442e-11 20 17659365 17659394 30 - 2.046 1.652 -1.329
ENSG00000125844 E058 52.3325642 0.0009909325 1.106193e-15 1.848987e-13 20 17659395 17659424 30 - 1.924 1.522 -1.360
ENSG00000125844 E059 153.8845349 0.0002896745 7.546067e-08 2.886252e-06 20 17659425 17659574 150 - 2.264 2.105 -0.532
ENSG00000125844 E060 140.1834367 0.0014884637 2.580636e-07 8.640603e-06 20 17659575 17659604 30 - 2.237 2.054 -0.615
ENSG00000125844 E061 110.0956505 0.0005315794 8.139847e-10 4.836716e-08 20 17659605 17659605 1 - 2.152 1.936 -0.727
ENSG00000125844 E062 120.5233674 0.0003946001 2.322418e-10 1.523956e-08 20 17659606 17659613 8 - 2.189 1.977 -0.709
ENSG00000125844 E063 141.2821365 0.0024508307 4.006144e-06 9.511190e-05 20 17659614 17659634 21 - 2.238 2.060 -0.595
ENSG00000125844 E064 190.5430520 0.0074473107 3.765182e-05 6.551378e-04 20 17659635 17659694 60 - 2.385 2.174 -0.705
ENSG00000125844 E065 191.6277839 0.0160534910 1.652062e-04 2.280162e-03 20 17659695 17659724 30 - 2.420 2.147 -0.910
ENSG00000125844 E066 365.9053612 0.0061269536 2.872988e-05 5.196501e-04 20 17659725 17659844 120 - 2.652 2.467 -0.617
ENSG00000125844 E067 396.4132630 0.0008517934 1.186623e-07 4.327160e-06 20 17659845 17659979 135 - 2.650 2.528 -0.408
ENSG00000125844 E068 737.8937381 0.0016383765 6.698306e-07 2.005158e-05 20 17659980 17660528 549 - 2.917 2.799 -0.393
ENSG00000125844 E069 5.3130000 0.0072057022 6.190425e-01 7.831383e-01 20 17679995 17679998 4 - 0.813 0.744 -0.274
ENSG00000125844 E070 49.6279064 0.0007229026 3.118703e-02 1.308905e-01 20 17679999 17680075 77 - 1.751 1.641 -0.375
ENSG00000125844 E071 162.1590611 0.0005898160 4.509519e-01 6.663327e-01 20 17682028 17682295 268 - 2.204 2.181 -0.076