ENSG00000124486

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000324545 ENSG00000124486 HEK293_OSMI2_6hA HEK293_TMG_6hB USP9X protein_coding protein_coding 27.92722 18.87503 37.9051 5.213627 2.154531 1.00553 1.457407 1.1872887 1.5417830 0.4986106 0.18925436 0.37415570 0.05096667 0.05733333 0.041333333 -0.0160000 7.929623e-01 1.42461e-09 FALSE TRUE
ENST00000378308 ENSG00000124486 HEK293_OSMI2_6hA HEK293_TMG_6hB USP9X protein_coding protein_coding 27.92722 18.87503 37.9051 5.213627 2.154531 1.00553 12.709542 5.5895279 20.9225685 1.3393181 0.61895721 1.90237223 0.39332083 0.31736667 0.554133333 0.2367667 3.588737e-02 1.42461e-09 FALSE TRUE
ENST00000485180 ENSG00000124486 HEK293_OSMI2_6hA HEK293_TMG_6hB USP9X protein_coding retained_intron 27.92722 18.87503 37.9051 5.213627 2.154531 1.00553 1.215135 0.5309789 0.2672426 0.2969880 0.03849263 -0.96442303 0.06462500 0.03646667 0.007066667 -0.0294000 7.862838e-01 1.42461e-09 FALSE TRUE
MSTRG.34114.1 ENSG00000124486 HEK293_OSMI2_6hA HEK293_TMG_6hB USP9X protein_coding   27.92722 18.87503 37.9051 5.213627 2.154531 1.00553 2.123310 1.6607024 0.4407838 0.4584353 0.08906569 -1.88994724 0.06978333 0.08906667 0.011566667 -0.0775000 1.424610e-09 1.42461e-09 FALSE TRUE
MSTRG.34114.15 ENSG00000124486 HEK293_OSMI2_6hA HEK293_TMG_6hB USP9X protein_coding   27.92722 18.87503 37.9051 5.213627 2.154531 1.00553 7.247267 9.1434291 9.6259509 3.6956530 0.82720400 0.07411472 0.31795417 0.43046667 0.254666667 -0.1758000 5.517021e-01 1.42461e-09 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000124486 E001 9.6791944 0.0043356914 7.419013e-05 1.165404e-03 X 41085431 41085444 14 + 0.797 1.244 1.652
ENSG00000124486 E002 39.5932442 0.0221485920 2.057908e-01 4.367955e-01 X 41085445 41085628 184 + 1.542 1.665 0.420
ENSG00000124486 E003 28.4145246 0.0116476271 3.417796e-01 5.795291e-01 X 41085629 41085655 27 + 1.471 1.410 -0.212
ENSG00000124486 E004 40.8730492 0.0225462950 2.936471e-01 5.343083e-01 X 41085656 41085708 53 + 1.634 1.544 -0.308
ENSG00000124486 E005 34.0645774 0.0263612319 3.338335e-01 5.724252e-01 X 41085709 41085714 6 + 1.558 1.463 -0.323
ENSG00000124486 E006 43.0503889 0.0119712071 1.842850e-02 9.045302e-02 X 41085715 41085741 27 + 1.678 1.508 -0.580
ENSG00000124486 E007 38.2249942 0.0084408301 2.631553e-03 2.115996e-02 X 41085742 41085756 15 + 1.638 1.432 -0.707
ENSG00000124486 E008 39.1894267 0.0044422880 4.799162e-04 5.494548e-03 X 41085757 41085769 13 + 1.652 1.439 -0.727
ENSG00000124486 E009 36.2017078 0.0011106767 2.176146e-03 1.824716e-02 X 41085770 41085775 6 + 1.607 1.440 -0.570
ENSG00000124486 E010 130.8779888 0.0009797225 1.878058e-10 1.257144e-08 X 41085776 41086109 334 + 2.167 1.957 -0.702
ENSG00000124486 E011 2.8937823 0.0077414291 4.251277e-01 6.473542e-01 X 41086700 41086853 154 + 0.613 0.502 -0.510
ENSG00000124486 E012 1.8116575 0.0365563488 5.406795e-01 7.295141e-01 X 41086854 41086857 4 + 0.465 0.363 -0.549
ENSG00000124486 E013 2.4363263 0.0092638246 1.654756e-01 3.845248e-01 X 41086858 41086952 95 + 0.587 0.363 -1.133
ENSG00000124486 E014 0.9287192 0.0162352766 4.132646e-02   X 41087286 41087289 4 + 0.386 0.000 -13.010
ENSG00000124486 E015 1.5533880 0.0125484154 5.475779e-03 3.709711e-02 X 41087290 41087361 72 + 0.530 0.000 -13.858
ENSG00000124486 E016 2.6198470 0.6051989785 5.103253e-01 7.081976e-01 X 41087617 41087665 49 + 0.590 0.447 -0.681
ENSG00000124486 E017 165.2829497 0.0122641034 7.977394e-06 1.725570e-04 X 41123471 41123724 254 + 2.285 2.011 -0.915
ENSG00000124486 E018 155.0857657 0.0207683493 2.075819e-05 3.943639e-04 X 41129000 41129145 146 + 2.269 1.944 -1.088
ENSG00000124486 E019 127.3183024 0.0380794585 8.508219e-04 8.695124e-03 X 41131457 41131536 80 + 2.188 1.835 -1.184
ENSG00000124486 E020 138.3446258 0.0204219921 7.448595e-05 1.169403e-03 X 41134725 41134837 113 + 2.216 1.902 -1.055
ENSG00000124486 E021 204.5221219 0.0014862439 1.520982e-27 1.008976e-24 X 41136804 41137022 219 + 2.393 2.038 -1.186
ENSG00000124486 E022 154.6958088 0.0031616739 5.951423e-18 1.358452e-15 X 41140656 41140771 116 + 2.271 1.913 -1.200
ENSG00000124486 E023 218.5340772 0.0006545941 3.309128e-36 4.289817e-33 X 41140966 41141217 252 + 2.423 2.067 -1.186
ENSG00000124486 E024 159.8826946 0.0009336729 7.298063e-24 3.296220e-21 X 41141293 41141431 139 + 2.283 1.955 -1.100
ENSG00000124486 E025 198.6745492 0.0041838592 9.790690e-13 1.005251e-10 X 41143291 41143443 153 + 2.368 2.083 -0.953
ENSG00000124486 E026 172.1365169 0.0005748913 2.441496e-15 3.896824e-13 X 41144522 41144626 105 + 2.292 2.070 -0.742
ENSG00000124486 E027 217.5950767 0.0040505137 4.376022e-09 2.223666e-07 X 41148369 41148575 207 + 2.392 2.168 -0.750
ENSG00000124486 E028 193.3345104 0.0020690232 2.810408e-14 3.867682e-12 X 41150921 41151057 137 + 2.349 2.094 -0.852
ENSG00000124486 E029 29.9368490 0.0014612464 5.494075e-06 1.251704e-04 X 41152933 41152947 15 + 1.566 1.265 -1.041
ENSG00000124486 E030 223.0282597 0.0049843585 8.785831e-10 5.189691e-08 X 41152948 41153081 134 + 2.409 2.159 -0.835
ENSG00000124486 E031 195.9633786 0.0002774142 3.414267e-26 1.922509e-23 X 41162790 41162877 88 + 2.360 2.080 -0.936
ENSG00000124486 E032 373.4808589 0.0023462008 7.527049e-15 1.127219e-12 X 41165872 41166214 343 + 2.625 2.403 -0.740
ENSG00000124486 E033 0.3040503 0.0274424043 4.243915e-01   X 41167145 41167481 337 + 0.169 0.000 -11.151
ENSG00000124486 E034 209.9139998 0.0002317273 5.232376e-16 9.113618e-14 X 41167482 41167577 96 + 2.367 2.175 -0.644
ENSG00000124486 E035 313.7057452 0.0001968268 4.173148e-23 1.745558e-20 X 41168007 41168218 212 + 2.543 2.348 -0.648
ENSG00000124486 E036 1.5165406 0.5584353941 8.486173e-01 9.241442e-01 X 41168219 41168242 24 + 0.392 0.370 -0.128
ENSG00000124486 E037 187.9673394 0.0002937222 3.865563e-11 2.979852e-09 X 41169995 41170067 73 + 2.313 2.151 -0.540
ENSG00000124486 E038 239.5420761 0.0003128689 1.895218e-07 6.572424e-06 X 41170068 41170235 168 + 2.401 2.297 -0.348
ENSG00000124486 E039 263.8472140 0.0001889607 1.519313e-04 2.121638e-03 X 41170470 41170619 150 + 2.428 2.367 -0.202
ENSG00000124486 E040 243.7358999 0.0001910221 5.674383e-05 9.297961e-04 X 41171838 41171958 121 + 2.396 2.326 -0.233
ENSG00000124486 E041 0.4536995 0.1514984235 1.000000e+00   X 41183994 41183997 4 + 0.170 0.156 -0.150
ENSG00000124486 E042 239.9423190 0.0005307042 1.245240e-04 1.793642e-03 X 41183998 41184128 131 + 2.389 2.316 -0.245
ENSG00000124486 E043 377.3140569 0.0002125394 1.029593e-11 8.830739e-10 X 41184397 41184675 279 + 2.598 2.487 -0.370
ENSG00000124486 E044 0.3040503 0.0274424043 4.243915e-01   X 41184676 41184740 65 + 0.169 0.000 -11.151
ENSG00000124486 E045 249.2086398 0.0003407853 1.813643e-08 8.035438e-07 X 41186517 41186642 126 + 2.419 2.304 -0.385
ENSG00000124486 E046 142.6281143 0.0003392716 6.251921e-04 6.797618e-03 X 41187992 41188065 74 + 2.168 2.087 -0.272
ENSG00000124486 E047 136.4129173 0.0002980422 5.849672e-02 1.993997e-01 X 41188066 41188117 52 + 2.133 2.100 -0.111
ENSG00000124486 E048 241.6249764 0.0002403626 1.651127e-03 1.467905e-02 X 41189309 41189475 167 + 2.384 2.334 -0.167
ENSG00000124486 E049 0.2922838 0.0254502859 6.936672e-01   X 41189476 41189922 447 + 0.093 0.157 0.865
ENSG00000124486 E050 0.1779838 0.0438635734 9.407808e-01   X 41195905 41196005 101 + 0.093 0.000 -9.888
ENSG00000124486 E051 217.4146313 0.0003102126 1.407098e-02 7.463229e-02 X 41196251 41196359 109 + 2.333 2.296 -0.123
ENSG00000124486 E052 283.8857473 0.0001676471 1.272561e-06 3.500325e-05 X 41196592 41196738 147 + 2.465 2.384 -0.273
ENSG00000124486 E053 276.2139110 0.0002041193 3.533082e-04 4.271060e-03 X 41197364 41197510 147 + 2.444 2.390 -0.179
ENSG00000124486 E054 301.9458119 0.0002551959 8.273315e-01 9.122521e-01 X 41198528 41198750 223 + 2.451 2.484 0.110
ENSG00000124486 E055 428.5726471 0.0009855701 6.202342e-01 7.839914e-01 X 41201060 41201280 221 + 2.610 2.624 0.047
ENSG00000124486 E056 5.2492818 0.1292078190 4.761087e-01 6.843146e-01 X 41205059 41205302 244 + 0.727 0.855 0.511
ENSG00000124486 E057 412.8746029 0.0007808737 3.558664e-01 5.924063e-01 X 41205303 41205493 191 + 2.597 2.604 0.022
ENSG00000124486 E058 357.1054409 0.0001727150 4.705436e-02 1.726608e-01 X 41210509 41210682 174 + 2.511 2.579 0.224
ENSG00000124486 E059 334.7865238 0.0001871531 9.255856e-02 2.685283e-01 X 41214568 41214709 142 + 2.484 2.547 0.208
ENSG00000124486 E060 1093.8018209 0.0000871054 2.694077e-03 2.153829e-02 X 41215899 41216652 754 + 3.000 3.062 0.206
ENSG00000124486 E061 329.5302602 0.0001843078 1.042516e-08 4.875881e-07 X 41217220 41217343 124 + 2.445 2.590 0.482
ENSG00000124486 E062 374.8726778 0.0001877317 4.863038e-10 2.998750e-08 X 41218372 41218502 131 + 2.498 2.646 0.494
ENSG00000124486 E063 330.1031261 0.0005242462 6.942652e-12 6.147143e-10 X 41218503 41218597 95 + 2.428 2.608 0.601
ENSG00000124486 E064 381.6695427 0.0034272438 4.517398e-06 1.054513e-04 X 41219102 41219231 130 + 2.487 2.674 0.624
ENSG00000124486 E065 523.8759634 0.0024919116 3.002407e-10 1.921891e-08 X 41223217 41223402 186 + 2.612 2.828 0.720
ENSG00000124486 E066 613.5538098 0.0022254837 4.568227e-16 8.006089e-14 X 41224742 41224962 221 + 2.662 2.915 0.841
ENSG00000124486 E067 405.4854049 0.0017156999 4.922851e-17 9.812363e-15 X 41225049 41225137 89 + 2.482 2.737 0.849
ENSG00000124486 E068 2.3680061 0.0777987176 4.155167e-02 1.587658e-01 X 41228983 41229252 270 + 0.342 0.725 1.847
ENSG00000124486 E069 490.0016988 0.0035615900 7.730396e-09 3.724253e-07 X 41229253 41229409 157 + 2.577 2.805 0.759
ENSG00000124486 E070 544.4518678 0.0018008167 9.184983e-18 2.025742e-15 X 41229567 41229779 213 + 2.613 2.862 0.828
ENSG00000124486 E071 15.2815894 0.0025670063 3.059528e-05 5.490629e-04 X 41229780 41229827 48 + 1.003 1.398 1.401
ENSG00000124486 E072 0.4952057 0.4272260224 9.446624e-01   X 41229828 41229896 69 + 0.170 0.158 -0.124
ENSG00000124486 E073 394.3277350 0.0010053939 7.308504e-32 6.819517e-29 X 41230501 41230596 96 + 2.447 2.750 1.011
ENSG00000124486 E074 0.6246688 0.0192910083 1.227655e-01   X 41230597 41230606 10 + 0.291 0.000 -12.341
ENSG00000124486 E075 1293.5146031 0.0015490699 9.200471e-37 1.280698e-33 X 41232387 41236579 4193 + 2.968 3.255 0.957