ENSG00000124374

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000244221 ENSG00000124374 HEK293_OSMI2_6hA HEK293_TMG_6hB PAIP2B protein_coding protein_coding 14.93387 13.66479 14.70582 1.576882 0.204129 0.1058489 3.166908 2.277538 4.2003331 0.3473191 0.2038661 0.8801386 0.2115583 0.1659333 0.28610000 0.120166667 0.02664205 0.02664205 FALSE TRUE
MSTRG.18612.2 ENSG00000124374 HEK293_OSMI2_6hA HEK293_TMG_6hB PAIP2B protein_coding   14.93387 13.66479 14.70582 1.576882 0.204129 0.1058489 9.958422 9.063971 9.9078305 0.7321052 0.7493683 0.1282906 0.6694083 0.6695333 0.67300000 0.003466667 1.00000000 0.02664205 FALSE TRUE
MSTRG.18612.3 ENSG00000124374 HEK293_OSMI2_6hA HEK293_TMG_6hB PAIP2B protein_coding   14.93387 13.66479 14.70582 1.576882 0.204129 0.1058489 1.606011 2.091810 0.4838299 0.6112506 0.4838299 -2.0895464 0.1044042 0.1460667 0.03323333 -0.112833333 0.24353965 0.02664205 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000124374 E001 277.961218 1.5089384043 7.948604e-01 0.8932461570 2 71182738 71188409 5672 - 2.541 2.349 -0.639
ENSG00000124374 E002 72.142711 0.4641634429 2.282235e-01 0.4631791141 2 71188410 71188535 126 - 1.826 1.881 0.186
ENSG00000124374 E003 125.425933 0.0006363068 1.175728e-05 0.0002410257 2 71189845 71190021 177 - 2.087 2.109 0.073
ENSG00000124374 E004 103.715115 0.1083270922 9.345748e-01 0.9694959221 2 71202452 71202600 149 - 2.041 1.994 -0.160
ENSG00000124374 E005 1.160573 0.2641997931 6.265512e-01   2 71226209 71226264 56 - 0.398 0.267 -0.826
ENSG00000124374 E006 2.147471 0.0318414442 1.401199e-01 0.3476953450 2 71226355 71226457 103 - 0.397 0.576 0.892
ENSG00000124374 E007 55.335204 0.0723441306 5.076268e-01 0.7061203576 2 71226928 71226962 35 - 1.818 1.685 -0.450
ENSG00000124374 E008 65.634947 0.1708335446 5.091042e-01 0.7072428299 2 71226963 71227103 141 - 1.906 1.741 -0.557