ENSG00000123384

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000243077 ENSG00000123384 HEK293_OSMI2_6hA HEK293_TMG_6hB LRP1 protein_coding protein_coding 3.278291 4.710183 1.6851 0.3622922 0.07415463 -1.477472 1.70991196 2.889900 1.22708262 0.3183504 0.26204518 -1.2290612 0.5523167 0.61230000 0.73066667 0.1183667 0.74043368 0.04639083 FALSE TRUE
ENST00000451724 ENSG00000123384 HEK293_OSMI2_6hA HEK293_TMG_6hB LRP1 protein_coding retained_intron 3.278291 4.710183 1.6851 0.3622922 0.07415463 -1.477472 0.04359069 0.000000 0.09252078 0.0000000 0.06495237 3.3578445 0.0181000 0.00000000 0.05320000 0.0532000 0.17422891 0.04639083 FALSE FALSE
ENST00000556356 ENSG00000123384 HEK293_OSMI2_6hA HEK293_TMG_6hB LRP1 protein_coding retained_intron 3.278291 4.710183 1.6851 0.3622922 0.07415463 -1.477472 0.88562394 1.272433 0.07853850 0.1870306 0.03999379 -3.8564353 0.2178625 0.27920000 0.04813333 -0.2310667 0.04639083 0.04639083 FALSE TRUE
MSTRG.7491.4 ENSG00000123384 HEK293_OSMI2_6hA HEK293_TMG_6hB LRP1 protein_coding   3.278291 4.710183 1.6851 0.3622922 0.07415463 -1.477472 0.44356707 0.373271 0.28695850 0.2396427 0.28695850 -0.3681035 0.1592792 0.07453333 0.16803333 0.0935000 0.91519257 0.04639083 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000123384 E001 0.3228314 0.3717839648 7.340242e-02   12 57128483 57128492 10 + 0.328 0.000 -13.460
ENSG00000123384 E002 0.8178494 0.3783680004 2.808725e-01   12 57128493 57128715 223 + 0.430 0.137 -2.184
ENSG00000123384 E003 5.0798332 0.0056783893 3.337055e-01 5.723001e-01 12 57128716 57128908 193 + 0.820 0.690 -0.525
ENSG00000123384 E004 6.8963193 0.0513949737 9.594714e-01 9.816509e-01 12 57128909 57129031 123 + 0.820 0.845 0.096
ENSG00000123384 E005 8.7344878 0.0779340083 7.934615e-01 8.923709e-01 12 57138459 57138581 123 + 0.854 0.946 0.351
ENSG00000123384 E006 8.1327597 0.0295712799 9.925688e-01 9.979448e-01 12 57141374 57141511 138 + 0.887 0.901 0.052
ENSG00000123384 E007 9.1469260 0.0142721785 6.613190e-01 8.107534e-01 12 57143679 57143798 120 + 0.888 0.956 0.260
ENSG00000123384 E008 9.1253162 0.0047495125 8.331024e-01 9.155204e-01 12 57144972 57145100 129 + 0.918 0.954 0.133
ENSG00000123384 E009 17.0252443 0.0185387205 8.270918e-05 1.277427e-03 12 57145227 57145490 264 + 1.462 1.072 -1.375
ENSG00000123384 E010 0.8507255 0.0182757742 1.972893e-01   12 57148981 57149679 699 + 0.000 0.285 13.376
ENSG00000123384 E011 1.4875703 0.0121177874 4.915834e-02 1.775952e-01 12 57149680 57150059 380 + 0.000 0.427 14.220
ENSG00000123384 E012 14.2068079 0.0070485781 1.180182e-06 3.277546e-05 12 57154208 57154370 163 + 1.419 0.969 -1.602
ENSG00000123384 E013 15.0183166 0.0494855871 4.558371e-02 1.689804e-01 12 57154479 57154701 223 + 1.315 1.078 -0.843
ENSG00000123384 E014 0.0000000       12 57154702 57155593 892 +      
ENSG00000123384 E015 15.4160169 0.0182078201 9.079705e-03 5.417930e-02 12 57156094 57156283 190 + 1.338 1.071 -0.945
ENSG00000123384 E016 12.9175752 0.0073241560 3.557334e-03 2.669103e-02 12 57156777 57156920 144 + 1.277 0.989 -1.036
ENSG00000123384 E017 16.3463116 0.0026340827 5.736956e-03 3.842767e-02 12 57158402 57158638 237 + 1.338 1.098 -0.849
ENSG00000123384 E018 14.3521467 0.0023395121 4.978849e-03 3.450833e-02 12 57159825 57160005 181 + 1.302 1.050 -0.901
ENSG00000123384 E019 14.1466107 0.0306017613 6.008036e-02 2.030130e-01 12 57160893 57161115 223 + 1.267 1.052 -0.767
ENSG00000123384 E020 14.4698019 0.0349435041 8.918770e-02 2.622705e-01 12 57162317 57162518 202 + 1.266 1.067 -0.708
ENSG00000123384 E021 11.7471815 0.0110159046 5.314685e-01 7.230453e-01 12 57162858 57162983 126 + 1.088 1.028 -0.219
ENSG00000123384 E022 0.1723744 0.0303130081 1.000000e+00   12 57164428 57165804 1377 + 0.000 0.074 11.056
ENSG00000123384 E023 13.6303143 0.0026411720 6.807491e-01 8.231863e-01 12 57165805 57165945 141 + 1.125 1.091 -0.123
ENSG00000123384 E024 13.2653566 0.0025122557 8.340033e-01 9.160315e-01 12 57166084 57166209 126 + 1.067 1.097 0.111
ENSG00000123384 E025 0.0000000       12 57166210 57166412 203 +      
ENSG00000123384 E026 10.7252046 0.0030150532 1.320200e-01 3.349973e-01 12 57166930 57167046 117 + 1.125 0.971 -0.563
ENSG00000123384 E027 5.1477805 0.0140135184 7.524567e-02 2.353175e-01 12 57167444 57167444 1 + 0.918 0.672 -0.978
ENSG00000123384 E028 9.9819683 0.0035585140 9.459819e-03 5.578494e-02 12 57167445 57167524 80 + 1.177 0.905 -0.993
ENSG00000123384 E029 0.0000000       12 57168185 57168235 51 +      
ENSG00000123384 E030 15.0729478 0.0025563174 7.197970e-03 4.557211e-02 12 57169140 57169307 168 + 1.315 1.077 -0.843
ENSG00000123384 E031 13.7623727 0.0023383566 2.395810e-04 3.105118e-03 12 57173168 57173350 183 + 1.337 1.004 -1.190
ENSG00000123384 E032 14.6506330 0.0031031489 6.522136e-02 2.143787e-01 12 57173780 57173980 201 + 1.251 1.084 -0.595
ENSG00000123384 E033 15.3505643 0.0190529244 2.948728e-01 5.353851e-01 12 57175460 57175705 246 + 1.223 1.115 -0.383
ENSG00000123384 E034 19.3677526 0.0449182457 3.561938e-01 5.926895e-01 12 57175909 57176106 198 + 1.320 1.214 -0.373
ENSG00000123384 E035 23.1566702 0.0023492847 1.484323e-01 3.600315e-01 12 57177041 57177245 205 + 1.400 1.295 -0.366
ENSG00000123384 E036 16.0790134 0.0045108854 9.206940e-01 9.625855e-01 12 57177427 57177591 165 + 1.177 1.178 0.004
ENSG00000123384 E037 18.1147547 0.0019762839 7.235041e-01 8.502127e-01 12 57178359 57178603 245 + 1.237 1.215 -0.079
ENSG00000123384 E038 13.3011176 0.0026066996 1.460657e-01 3.564596e-01 12 57178890 57179021 132 + 1.193 1.057 -0.488
ENSG00000123384 E039 21.2450583 0.0350374079 3.601549e-01 5.958304e-01 12 57179329 57179556 228 + 1.340 1.263 -0.267
ENSG00000123384 E040 18.9016240 0.0021652195 6.078262e-01 7.754238e-01 12 57179782 57179956 175 + 1.265 1.229 -0.124
ENSG00000123384 E041 13.0182831 0.0024991372 6.896705e-01 8.288109e-01 12 57180047 57180141 95 + 1.045 1.097 0.188
ENSG00000123384 E042 17.1565267 0.0028906781 1.451673e-01 3.551501e-01 12 57180330 57180479 150 + 1.290 1.168 -0.433
ENSG00000123384 E043 17.4060691 0.0025511678 6.284918e-02 2.091356e-01 12 57180667 57180807 141 + 1.315 1.157 -0.556
ENSG00000123384 E044 15.9062005 0.0023712006 6.874030e-01 8.274338e-01 12 57181157 57181291 135 + 1.193 1.163 -0.107
ENSG00000123384 E045 17.3193135 0.0021691874 5.056460e-01 7.047100e-01 12 57183379 57183510 132 + 1.237 1.185 -0.187
ENSG00000123384 E046 20.4300717 0.0225376340 7.647209e-01 8.754790e-01 12 57183775 57183909 135 + 1.240 1.277 0.128
ENSG00000123384 E047 21.6894042 0.0018217293 2.268253e-01 4.615402e-01 12 57184085 57184214 130 + 1.359 1.270 -0.311
ENSG00000123384 E048 20.7045749 0.0028449228 3.051745e-03 2.372385e-02 12 57184326 57184452 127 + 1.437 1.205 -0.808
ENSG00000123384 E049 20.5462454 0.0026406235 1.016802e-01 2.847893e-01 12 57184839 57184990 152 + 1.359 1.230 -0.452
ENSG00000123384 E050 18.0192874 0.0032699080 3.839229e-01 6.155206e-01 12 57185081 57185205 125 + 1.265 1.195 -0.244
ENSG00000123384 E051 33.4624225 0.0338589793 9.752821e-01 9.894814e-01 12 57185531 57185908 378 + 1.449 1.474 0.085
ENSG00000123384 E052 16.8291736 0.0214158426 2.344368e-01 4.701887e-01 12 57187267 57187368 102 + 1.265 1.155 -0.390
ENSG00000123384 E053 16.8548339 0.0206132606 5.173314e-01 7.132220e-01 12 57187369 57187456 88 + 1.224 1.168 -0.196
ENSG00000123384 E054 24.3504500 0.0014457048 8.050797e-01 8.992254e-01 12 57190805 57191009 205 + 1.349 1.338 -0.036
ENSG00000123384 E055 19.9897816 0.0093950351 1.397821e-02 7.425850e-02 12 57191320 57191512 193 + 1.046 1.320 0.976
ENSG00000123384 E056 16.4119753 0.0024755697 3.766065e-01 6.095645e-01 12 57192845 57192970 126 + 1.106 1.205 0.352
ENSG00000123384 E057 18.9822335 0.0083740199 9.184508e-01 9.614379e-01 12 57193176 57193304 129 + 1.237 1.243 0.022
ENSG00000123384 E058 19.4633158 0.0017026964 6.198273e-01 7.837207e-01 12 57193566 57193685 120 + 1.208 1.262 0.189
ENSG00000123384 E059 16.6785227 0.0019353677 9.656495e-01 9.847196e-01 12 57193899 57194012 114 + 1.177 1.190 0.046
ENSG00000123384 E060 19.6331377 0.0036740213 6.635014e-01 8.120806e-01 12 57194354 57194503 150 + 1.278 1.247 -0.108
ENSG00000123384 E061 22.9015528 0.0015711605 6.267732e-01 7.883665e-01 12 57194577 57194699 123 + 1.338 1.308 -0.105
ENSG00000123384 E062 18.3013662 0.0022249165 3.796857e-01 6.119408e-01 12 57194985 57195101 117 + 1.277 1.210 -0.238
ENSG00000123384 E063 17.9022767 0.0023840627 7.817276e-01 8.856460e-01 12 57195271 57195399 129 + 1.192 1.229 0.130
ENSG00000123384 E064 22.2639360 0.0026080736 8.180301e-02 2.483869e-01 12 57195658 57195780 123 + 1.400 1.270 -0.452
ENSG00000123384 E065 26.2006454 0.0013767725 4.931186e-01 6.960534e-01 12 57195863 57196003 141 + 1.400 1.357 -0.150
ENSG00000123384 E066 29.6643601 0.0015278622 4.391685e-01 6.581197e-01 12 57196087 57196277 191 + 1.454 1.407 -0.163
ENSG00000123384 E067 27.4385429 0.0057536019 2.449375e-01 4.821889e-01 12 57196982 57197165 184 + 1.314 1.421 0.373
ENSG00000123384 E068 23.3405765 0.0015916329 7.798026e-01 8.845840e-01 12 57197299 57197384 86 + 1.302 1.334 0.112
ENSG00000123384 E069 29.5220620 0.0014378517 2.782173e-01 5.183343e-01 12 57197545 57197664 120 + 1.471 1.404 -0.233
ENSG00000123384 E070 34.4373931 0.0062295769 2.482253e-01 4.860376e-01 12 57198156 57198343 188 + 1.539 1.467 -0.248
ENSG00000123384 E071 40.2015788 0.0230381075 3.472829e-01 5.847781e-01 12 57198465 57198670 206 + 1.613 1.534 -0.268
ENSG00000123384 E072 34.6728372 0.0055112876 5.878292e-01 7.622182e-01 12 57199212 57199400 189 + 1.517 1.484 -0.115
ENSG00000123384 E073 23.9901114 0.0018083186 9.673964e-01 9.856536e-01 12 57199877 57200025 149 + 1.326 1.331 0.017
ENSG00000123384 E074 0.2027342 0.0506465301 1.000000e+00   12 57200274 57200441 168 + 0.000 0.074 11.060
ENSG00000123384 E075 24.1327024 0.0025464895 6.002332e-01 7.703377e-01 12 57200442 57200535 94 + 1.359 1.327 -0.112
ENSG00000123384 E076 27.4373336 0.0044281776 2.266325e-01 4.613368e-01 12 57200699 57200815 117 + 1.446 1.361 -0.294
ENSG00000123384 E077 24.2471132 0.0022336537 2.047577e-01 4.356319e-01 12 57201034 57201107 74 + 1.400 1.308 -0.319
ENSG00000123384 E078 18.5336389 0.0019884001 6.537003e-01 8.059221e-01 12 57201108 57201153 46 + 1.251 1.220 -0.109
ENSG00000123384 E079 24.9287931 0.0016366229 9.851214e-01 9.943525e-01 12 57201497 57201619 123 + 1.348 1.356 0.028
ENSG00000123384 E080 24.4409754 0.0228947447 5.264391e-01 7.194884e-01 12 57201780 57201905 126 + 1.287 1.365 0.272
ENSG00000123384 E081 0.0000000       12 57201906 57201947 42 +      
ENSG00000123384 E082 23.2402577 0.0788686853 4.991914e-01 7.002717e-01 12 57202421 57202537 117 + 1.229 1.353 0.433
ENSG00000123384 E083 0.5171231 0.4525743450 6.786373e-01   12 57202820 57203180 361 + 0.000 0.196 12.664
ENSG00000123384 E084 13.9104581 0.0829063353 2.571582e-01 4.959106e-01 12 57203181 57203242 62 + 0.943 1.162 0.798
ENSG00000123384 E085 17.4603283 0.0027378780 2.134349e-01 4.457483e-01 12 57203243 57203287 45 + 1.106 1.239 0.472
ENSG00000123384 E086 25.6690312 0.0014319450 2.722115e-03 2.169697e-02 12 57203389 57203521 133 + 1.143 1.416 0.959
ENSG00000123384 E087 0.3447487 0.1775299958 7.978855e-01   12 57203522 57203531 10 + 0.000 0.138 12.064
ENSG00000123384 E088 1.5087182 0.3805795127 1.339430e-01 3.380028e-01 12 57203618 57204409 792 + 0.583 0.246 -1.894
ENSG00000123384 E089 28.5554279 0.0014172338 2.734006e-01 5.132556e-01 12 57204410 57204529 120 + 1.337 1.431 0.325
ENSG00000123384 E090 32.5833364 0.0018447164 4.742109e-01 6.829670e-01 12 57204627 57204749 123 + 1.419 1.479 0.207
ENSG00000123384 E091 3.8080960 0.1444771374 4.928500e-01 6.958859e-01 12 57204750 57205108 359 + 0.695 0.603 -0.393
ENSG00000123384 E092 31.9421081 0.0011214208 2.906155e-01 5.312831e-01 12 57205109 57205249 141 + 1.390 1.476 0.298
ENSG00000123384 E093 31.2586155 0.0013408435 2.378011e-02 1.084224e-01 12 57205351 57205485 135 + 1.302 1.487 0.639
ENSG00000123384 E094 32.5282350 0.0032182014 3.752030e-02 1.483592e-01 12 57205558 57205677 120 + 1.327 1.497 0.590
ENSG00000123384 E095 0.1426347 0.0324732026 1.505305e-01   12 57205678 57205785 108 + 0.193 0.000 -14.281
ENSG00000123384 E096 57.2159460 0.0376566865 7.606897e-02 2.368847e-01 12 57206473 57206741 269 + 1.561 1.736 0.595
ENSG00000123384 E097 58.5382181 0.0011505411 4.030255e-03 2.933691e-02 12 57208038 57208216 179 + 1.567 1.744 0.600
ENSG00000123384 E098 1.3971109 0.0272055814 3.354830e-01 5.739978e-01 12 57208217 57208710 494 + 0.193 0.395 1.404
ENSG00000123384 E099 49.2887836 0.0010276373 1.648602e-01 3.838315e-01 12 57208711 57208817 107 + 1.560 1.654 0.318
ENSG00000123384 E100 46.3615080 0.0009012254 5.150432e-01 7.116654e-01 12 57209083 57209199 117 + 1.573 1.622 0.165
ENSG00000123384 E101 56.3113948 0.0032192090 8.118042e-01 9.033327e-01 12 57209692 57209868 177 + 1.702 1.695 -0.025
ENSG00000123384 E102 43.7001394 0.0137632412 3.914889e-01 6.216114e-01 12 57210029 57210169 141 + 1.532 1.606 0.251
ENSG00000123384 E103 42.9643920 0.0057948545 3.631410e-03 2.710021e-02 12 57210307 57210480 174 + 1.400 1.629 0.782
ENSG00000123384 E104 42.1311939 0.0012636635 7.116118e-03 4.516502e-02 12 57210718 57210879 162 + 1.419 1.610 0.654
ENSG00000123384 E105 43.5799534 0.0066307193 1.319115e-02 7.121391e-02 12 57211176 57211350 175 + 1.429 1.621 0.657
ENSG00000123384 E106 37.4985811 0.0333456012 1.278762e-01 3.284777e-01 12 57211487 57211588 102 + 1.390 1.559 0.580
ENSG00000123384 E107 34.1651349 0.0310526900 1.517526e-01 3.648640e-01 12 57211750 57211814 65 + 1.359 1.520 0.555
ENSG00000123384 E108 39.4230942 0.0039011075 1.464888e-01 3.571587e-01 12 57211927 57212017 91 + 1.455 1.565 0.377
ENSG00000123384 E109 54.3635188 0.0163118259 1.776351e-02 8.822686e-02 12 57212117 57212261 145 + 1.520 1.720 0.681
ENSG00000123384 E110 125.0468696 0.0108270447 8.468423e-04 8.668110e-03 12 57212415 57213361 947 + 1.868 2.078 0.705