ENSG00000123066

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000281928 ENSG00000123066 HEK293_OSMI2_6hA HEK293_TMG_6hB MED13L protein_coding protein_coding 9.904254 9.927591 15.02189 1.966883 0.9228834 0.597058 2.9921363 4.3262765 3.57405625 1.0014261 0.03465121 -0.2748635 0.31474167 0.4284667 0.239933333 -0.18853333 4.640174e-03 9.61211e-24 FALSE TRUE
ENST00000647567 ENSG00000123066 HEK293_OSMI2_6hA HEK293_TMG_6hB MED13L protein_coding protein_coding 9.904254 9.927591 15.02189 1.966883 0.9228834 0.597058 0.9672548 0.0000000 2.74961497 0.0000000 0.33556375 8.1083232 0.07692083 0.0000000 0.184066667 0.18406667 1.430196e-15 9.61211e-24 FALSE TRUE
ENST00000648737 ENSG00000123066 HEK293_OSMI2_6hA HEK293_TMG_6hB MED13L protein_coding retained_intron 9.904254 9.927591 15.02189 1.966883 0.9228834 0.597058 1.8182401 0.0000000 3.90780400 0.0000000 0.44367621 8.6139014 0.15618333 0.0000000 0.258933333 0.25893333 9.612110e-24 9.61211e-24 FALSE TRUE
ENST00000648762 ENSG00000123066 HEK293_OSMI2_6hA HEK293_TMG_6hB MED13L protein_coding retained_intron 9.904254 9.927591 15.02189 1.966883 0.9228834 0.597058 0.8127932 0.4064478 0.04702141 0.4064478 0.01518368 -2.8685600 0.11578333 0.0331000 0.003133333 -0.02996667 1.000000e+00 9.61211e-24 FALSE TRUE
ENST00000649607 ENSG00000123066 HEK293_OSMI2_6hA HEK293_TMG_6hB MED13L protein_coding protein_coding 9.904254 9.927591 15.02189 1.966883 0.9228834 0.597058 1.0970632 2.1799327 1.21286502 0.1116365 0.33701450 -0.8406214 0.11832917 0.2376667 0.082233333 -0.15543333 1.314421e-01 9.61211e-24 FALSE TRUE
ENST00000649937 ENSG00000123066 HEK293_OSMI2_6hA HEK293_TMG_6hB MED13L protein_coding retained_intron 9.904254 9.927591 15.02189 1.966883 0.9228834 0.597058 0.7479964 1.9266971 0.92391252 0.7156058 0.63461128 -1.0522390 0.07594167 0.1761667 0.057266667 -0.11890000 5.519991e-01 9.61211e-24   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000123066 E001 1.6366223 0.0115462079 4.717912e-01 6.813670e-01 12 115957905 115958132 228 - 0.343 0.488 0.783
ENSG00000123066 E002 4.1790509 0.0060640835 8.847488e-01 9.437822e-01 12 115958576 115958599 24 - 0.692 0.740 0.197
ENSG00000123066 E003 33.9220488 0.0547919014 2.853563e-03 2.251861e-02 12 115958600 115958770 171 - 1.265 1.725 1.582
ENSG00000123066 E004 85.6154712 0.0326528406 2.787188e-05 5.059107e-04 12 115958771 115959260 490 - 1.652 2.121 1.579
ENSG00000123066 E005 55.9277775 0.0142714940 1.282890e-05 2.603599e-04 12 115959261 115959342 82 - 1.535 1.911 1.274
ENSG00000123066 E006 46.3048874 0.0069744909 1.288751e-07 4.668731e-06 12 115959343 115959363 21 - 1.445 1.835 1.327
ENSG00000123066 E007 38.4221894 0.0107384243 4.615247e-04 5.324404e-03 12 115959364 115959377 14 - 1.421 1.728 1.047
ENSG00000123066 E008 106.6232578 0.0085783582 2.095572e-04 2.778764e-03 12 115959378 115959605 228 - 1.894 2.147 0.849
ENSG00000123066 E009 39.4700074 0.0010038264 4.572250e-04 5.288607e-03 12 115959606 115959615 10 - 1.485 1.716 0.790
ENSG00000123066 E010 93.1437663 0.0005045540 2.033006e-06 5.295767e-05 12 115959616 115959862 247 - 1.864 2.074 0.708
ENSG00000123066 E011 157.0697262 0.0077357363 9.460302e-03 5.578586e-02 12 115959863 115960346 484 - 2.111 2.280 0.565
ENSG00000123066 E012 261.8486725 0.0207074086 1.680079e-01 3.879394e-01 12 115960347 115961189 843 - 2.359 2.478 0.396
ENSG00000123066 E013 102.0408244 1.2203887371 4.327300e-01 6.532861e-01 12 115961190 115961398 209 - 1.874 2.128 0.855
ENSG00000123066 E014 65.7700749 0.0305529243 8.286115e-02 2.504541e-01 12 115963407 115963519 113 - 1.732 1.912 0.606
ENSG00000123066 E015 0.1308682 0.0326491905 4.568740e-01   12 115963520 115963549 30 - 0.000 0.129 13.219
ENSG00000123066 E016 89.4317917 0.0005869584 3.507438e-04 4.247316e-03 12 115966082 115966243 162 - 1.867 2.036 0.569
ENSG00000123066 E017 0.4279040 0.6423752463 3.139023e-01   12 115966244 115967158 915 - 0.271 0.000 -14.389
ENSG00000123066 E018 97.2515980 0.0004193702 3.484105e-03 2.624329e-02 12 115968940 115969097 158 - 1.922 2.060 0.465
ENSG00000123066 E019 96.4628461 0.0012874653 1.670088e-01 3.865617e-01 12 115970594 115970759 166 - 1.946 2.032 0.289
ENSG00000123066 E020 39.5304436 0.0031844537 3.604826e-01 5.960648e-01 12 115970760 115970770 11 - 1.563 1.649 0.292
ENSG00000123066 E021 76.1773201 0.0053430395 3.513906e-02 1.419396e-01 12 115972078 115972236 159 - 1.811 1.954 0.483
ENSG00000123066 E022 5.7167637 0.3475062353 8.532217e-01 9.267636e-01 12 115972237 115974181 1945 - 0.746 0.907 0.629
ENSG00000123066 E023 85.8416609 0.0061717968 9.871772e-02 2.795617e-01 12 115975171 115975313 143 - 1.882 1.996 0.386
ENSG00000123066 E024 3.4465850 0.0067476271 1.463284e-02 7.671149e-02 12 115975314 115975349 36 - 0.787 0.435 -1.570
ENSG00000123066 E025 3.5467858 0.0069692285 3.753976e-03 2.776497e-02 12 115975350 115975514 165 - 0.808 0.377 -1.972
ENSG00000123066 E026 111.1590559 0.0091879838 3.557970e-01 5.923543e-01 12 115975515 115975738 224 - 2.012 2.090 0.261
ENSG00000123066 E027 0.9450270 1.0534801641 9.377193e-01   12 115978327 115980480 2154 - 0.269 0.317 0.328
ENSG00000123066 E028 0.3150090 0.0315568504 9.635766e-01   12 115980481 115980749 269 - 0.114 0.129 0.199
ENSG00000123066 E029 74.3637075 0.0038429965 7.924191e-01 8.918645e-01 12 115980750 115980938 189 - 1.869 1.887 0.059
ENSG00000123066 E030 6.3938774 0.0047351988 8.430473e-03 5.129293e-02 12 115980939 115981303 365 - 0.989 0.681 -1.203
ENSG00000123066 E031 3.4874009 0.0932734409 1.630279e-01 3.812539e-01 12 115981304 115981564 261 - 0.746 0.490 -1.127
ENSG00000123066 E032 9.3438091 0.0447814174 3.922394e-01 6.221834e-01 12 115981565 115982383 819 - 1.061 0.953 -0.398
ENSG00000123066 E033 74.6523008 0.0071362330 8.530293e-01 9.266847e-01 12 115982384 115982595 212 - 1.871 1.888 0.057
ENSG00000123066 E034 30.5067321 0.0141167924 5.913921e-01 7.646609e-01 12 115982596 115982603 8 - 1.460 1.530 0.238
ENSG00000123066 E035 0.8567829 0.1565011726 3.550535e-02   12 115982604 115983116 513 - 0.403 0.000 -15.209
ENSG00000123066 E036 112.7995491 0.0004656260 3.853088e-01 6.167206e-01 12 115983117 115983519 403 - 2.027 2.089 0.208
ENSG00000123066 E037 31.1974515 0.0011635091 7.653973e-01 8.758958e-01 12 115983520 115983540 21 - 1.506 1.520 0.048
ENSG00000123066 E038 83.7374371 0.0007616951 8.662121e-03 5.230900e-02 12 115984180 115984372 193 - 1.964 1.893 -0.237
ENSG00000123066 E039 0.3393995 0.0274424043 2.219961e-01   12 115984373 115985440 1068 - 0.205 0.000 -13.866
ENSG00000123066 E040 85.9555526 0.0009229435 1.053274e-01 2.912711e-01 12 115986266 115986489 224 - 1.955 1.925 -0.103
ENSG00000123066 E041 0.1426347 0.0321600505 5.260126e-01   12 115986490 115987108 619 - 0.114 0.000 -12.863
ENSG00000123066 E042 71.4353177 0.0005821824 7.836389e-01 8.867560e-01 12 115987109 115987288 180 - 1.838 1.882 0.150
ENSG00000123066 E043 0.2922838 0.0258791504 9.807525e-01   12 115987289 115988579 1291 - 0.114 0.129 0.194
ENSG00000123066 E044 83.7397441 0.0006720468 8.187627e-01 9.072986e-01 12 115991020 115991180 161 - 1.908 1.949 0.140
ENSG00000123066 E045 137.4023329 0.0004262308 1.592520e-01 3.756306e-01 12 115991181 115991679 499 - 2.145 2.135 -0.035
ENSG00000123066 E046 29.8429625 0.0015072212 9.913968e-02 2.802530e-01 12 115991680 115991695 16 - 1.522 1.446 -0.258
ENSG00000123066 E047 43.0710887 0.0038852639 3.795594e-01 6.118493e-01 12 115991696 115991769 74 - 1.650 1.629 -0.071
ENSG00000123066 E048 60.5994101 0.0057783851 3.278994e-01 5.669575e-01 12 115991770 115991957 188 - 1.797 1.770 -0.092
ENSG00000123066 E049 0.0000000       12 115995521 115996475 955 -      
ENSG00000123066 E050 65.9116149 0.0179229031 2.718644e-01 5.117415e-01 12 115996476 115996681 206 - 1.852 1.786 -0.221
ENSG00000123066 E051 73.1899677 0.0037847391 8.098975e-03 4.978075e-02 12 115997010 115997227 218 - 1.914 1.810 -0.350
ENSG00000123066 E052 22.0718767 0.0018886228 8.228953e-02 2.492759e-01 12 115997228 115997230 3 - 1.400 1.301 -0.344
ENSG00000123066 E053 0.6246688 0.0192123412 4.395053e-02   12 115997231 116000172 2942 - 0.343 0.000 -14.864
ENSG00000123066 E054 46.2490612 0.0037525448 1.778450e-01 4.008940e-01 12 116003003 116003102 100 - 1.696 1.650 -0.155
ENSG00000123066 E055 0.6709767 0.0480595136 3.570318e-01   12 116003103 116003497 395 - 0.280 0.129 -1.389
ENSG00000123066 E056 0.1426347 0.0321600505 5.260126e-01   12 116003498 116003539 42 - 0.114 0.000 -12.863
ENSG00000123066 E057 3.0168281 0.0077727455 3.183082e-01 5.582022e-01 12 116003540 116005868 2329 - 0.664 0.534 -0.580
ENSG00000123066 E058 52.3089404 0.0068078936 2.592957e-01 4.982165e-01 12 116005869 116005993 125 - 1.746 1.710 -0.123
ENSG00000123066 E059 0.5008152 0.0360273449 9.818418e-02   12 116005994 116006305 312 - 0.280 0.000 -14.452
ENSG00000123066 E060 47.7002734 0.0034085987 1.032614e-02 5.952332e-02 12 116006306 116006411 106 - 1.742 1.632 -0.374
ENSG00000123066 E061 2.7571872 0.1236966855 4.052656e-01 6.324985e-01 12 116006412 116006806 395 - 0.657 0.487 -0.777
ENSG00000123066 E062 4.2231117 0.0358211035 5.743252e-02 1.970297e-01 12 116006807 116007410 604 - 0.827 0.536 -1.232
ENSG00000123066 E063 37.1642348 0.0011516399 5.951781e-03 3.950246e-02 12 116007411 116007459 49 - 1.642 1.515 -0.432
ENSG00000123066 E064 65.3799488 0.0006529411 3.102819e-04 3.833891e-03 12 116007460 116007636 177 - 1.879 1.752 -0.428
ENSG00000123066 E065 0.7448680 0.1413463692 9.621454e-01   12 116007637 116008400 764 - 0.206 0.232 0.217
ENSG00000123066 E066 143.9167495 0.0015028528 6.437277e-09 3.147704e-07 12 116008401 116009007 607 - 2.234 2.068 -0.557
ENSG00000123066 E067 50.2913421 0.0071178048 7.614880e-06 1.655167e-04 12 116009008 116009132 125 - 1.815 1.563 -0.857
ENSG00000123066 E068 0.2735028 0.0255321895 9.777701e-01   12 116009133 116010972 1840 - 0.114 0.129 0.195
ENSG00000123066 E069 46.0726067 0.0008965440 2.954971e-08 1.245525e-06 12 116012797 116012898 102 - 1.783 1.520 -0.895
ENSG00000123066 E070 23.8161729 0.0057443387 6.865484e-04 7.327282e-03 12 116012899 116012901 3 - 1.497 1.260 -0.821
ENSG00000123066 E071 60.4533429 0.0006949205 1.487057e-08 6.716396e-07 12 116015109 116015274 166 - 1.886 1.655 -0.781
ENSG00000123066 E072 69.3364533 0.0006603753 6.559350e-10 3.955712e-08 12 116019224 116019412 189 - 1.946 1.708 -0.804
ENSG00000123066 E073 65.9830920 0.0005791665 2.632988e-14 3.650138e-12 12 116019778 116019972 195 - 1.945 1.631 -1.060
ENSG00000123066 E074 58.2873011 0.0006317249 8.704565e-09 4.147686e-07 12 116022456 116022601 146 - 1.869 1.628 -0.816
ENSG00000123066 E075 50.5648745 0.0009280398 7.981744e-07 2.335028e-05 12 116096669 116096752 84 - 1.806 1.587 -0.744
ENSG00000123066 E076 0.1426347 0.0321600505 5.260126e-01   12 116096753 116096911 159 - 0.114 0.000 -12.863
ENSG00000123066 E077 0.3206185 0.0274424043 2.224681e-01   12 116109620 116110259 640 - 0.205 0.000 -13.865
ENSG00000123066 E078 45.9221626 0.0438471150 7.423011e-02 2.332114e-01 12 116111428 116111512 85 - 1.746 1.576 -0.578
ENSG00000123066 E079 0.6839606 0.0193874923 2.866633e-01   12 116230433 116230532 100 - 0.114 0.309 1.781
ENSG00000123066 E080 0.0000000       12 116230533 116230622 90 -      
ENSG00000123066 E081 0.1779838 0.0357060214 5.251676e-01   12 116232059 116232156 98 - 0.115 0.000 -12.867
ENSG00000123066 E082 0.3393995 0.0274424043 2.219961e-01   12 116236821 116236890 70 - 0.205 0.000 -13.866
ENSG00000123066 E083 31.0918830 0.0105482936 2.069753e-02 9.831932e-02 12 116237468 116237498 31 - 1.577 1.430 -0.505
ENSG00000123066 E084 51.9861932 0.0013066025 2.238644e-05 4.208110e-04 12 116237499 116237705 207 - 1.806 1.623 -0.619
ENSG00000123066 E085 0.0000000       12 116276062 116276429 368 -      
ENSG00000123066 E086 0.1614157 0.0335918123 5.256384e-01   12 116276430 116276759 330 - 0.114 0.000 -12.865
ENSG00000123066 E087 19.4104595 0.0219453571 4.115857e-02 1.577485e-01 12 116277060 116277693 634 - 1.385 1.220 -0.578