ENSG00000122966

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000392521 ENSG00000122966 HEK293_OSMI2_6hA HEK293_TMG_6hB CIT protein_coding protein_coding 10.01647 13.36888 8.413611 0.4042445 0.3624831 -0.6674463 3.0555877 3.5073638 4.17164627 0.2386244 0.15359552 0.2495765 0.32149583 0.26370000 0.496100000 0.23240000 0.0002082525 0.0002082525 FALSE TRUE
ENST00000544800 ENSG00000122966 HEK293_OSMI2_6hA HEK293_TMG_6hB CIT protein_coding retained_intron 10.01647 13.36888 8.413611 0.4042445 0.3624831 -0.6674463 0.6253771 0.5563508 0.75118970 0.3319687 0.24275814 0.4265601 0.06172083 0.04070000 0.089300000 0.04860000 0.7297113106 0.0002082525   FALSE
ENST00000677738 ENSG00000122966 HEK293_OSMI2_6hA HEK293_TMG_6hB CIT protein_coding retained_intron 10.01647 13.36888 8.413611 0.4042445 0.3624831 -0.6674463 0.9045226 2.2483305 0.19953330 0.4991597 0.05189650 -3.4300052 0.08077500 0.17060000 0.023333333 -0.14726667 0.0028963850 0.0002082525 FALSE TRUE
ENST00000677742 ENSG00000122966 HEK293_OSMI2_6hA HEK293_TMG_6hB CIT protein_coding processed_transcript 10.01647 13.36888 8.413611 0.4042445 0.3624831 -0.6674463 0.9351461 1.2987518 0.61440702 0.4183967 0.10068297 -1.0676329 0.08964583 0.09546667 0.074000000 -0.02146667 0.9009280770 0.0002082525 FALSE TRUE
ENST00000678708 ENSG00000122966 HEK293_OSMI2_6hA HEK293_TMG_6hB CIT protein_coding retained_intron 10.01647 13.36888 8.413611 0.4042445 0.3624831 -0.6674463 1.2452622 1.2026128 0.02727307 0.3418570 0.02727307 -5.0238413 0.11623333 0.09070000 0.003133333 -0.08756667 0.0012902590 0.0002082525 TRUE FALSE
MSTRG.8137.4 ENSG00000122966 HEK293_OSMI2_6hA HEK293_TMG_6hB CIT protein_coding   10.01647 13.36888 8.413611 0.4042445 0.3624831 -0.6674463 1.6573477 2.8015843 1.20223060 0.7119875 0.06126484 -1.2137191 0.17032917 0.21043333 0.144100000 -0.06633333 0.7565365876 0.0002082525 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000122966 E001 1.2212249 0.1619179846 2.373187e-01   12 119685791 119685792 2 - 0.155 0.424 1.946
ENSG00000122966 E002 1.7329988 0.0217318560 5.908450e-01 7.642785e-01 12 119685793 119685802 10 - 0.360 0.467 0.581
ENSG00000122966 E003 6.9935657 0.0063144377 1.611781e-02 8.222612e-02 12 119685803 119685813 11 - 0.647 0.987 1.338
ENSG00000122966 E004 408.7684996 0.0010360290 1.710245e-12 1.687617e-10 12 119685814 119687034 1221 - 2.471 2.647 0.587
ENSG00000122966 E005 244.3241714 0.0069515988 3.879870e-03 2.847483e-02 12 119687035 119687759 725 - 2.273 2.416 0.476
ENSG00000122966 E006 79.4385969 0.0121656212 1.082064e-01 2.960374e-01 12 119687760 119687948 189 - 1.804 1.926 0.409
ENSG00000122966 E007 57.8810187 0.0007435482 4.792649e-03 3.348702e-02 12 119687949 119688064 116 - 1.643 1.799 0.528
ENSG00000122966 E008 63.1931903 0.0032850042 2.526735e-03 2.050875e-02 12 119688065 119688210 146 - 1.664 1.842 0.601
ENSG00000122966 E009 34.8640641 0.0024786066 1.671492e-02 8.441826e-02 12 119688211 119688255 45 - 1.421 1.593 0.593
ENSG00000122966 E010 74.6454369 0.0006905845 3.039408e-06 7.516548e-05 12 119690151 119690381 231 - 1.703 1.929 0.766
ENSG00000122966 E011 33.3268181 0.0013268452 2.962107e-03 2.317487e-02 12 119690382 119690400 19 - 1.368 1.581 0.730
ENSG00000122966 E012 43.7386223 0.0037533967 2.470813e-03 2.013826e-02 12 119690401 119690451 51 - 1.492 1.699 0.707
ENSG00000122966 E013 16.3299705 0.0176678977 4.167768e-01 6.412063e-01 12 119690452 119690454 3 - 1.154 1.251 0.344
ENSG00000122966 E014 0.7502172 0.1126868163 1.407771e-01   12 119690455 119690481 27 - 0.000 0.299 12.428
ENSG00000122966 E015 3.3849286 0.1730781019 5.425329e-02 1.896632e-01 12 119690482 119691065 584 - 0.267 0.740 2.403
ENSG00000122966 E016 74.7379466 0.0218209807 1.670501e-01 3.865981e-01 12 119697659 119697838 180 - 1.782 1.901 0.399
ENSG00000122966 E017 1.2247365 0.0610833005 1.733233e-01   12 119697839 119697975 137 - 0.155 0.429 1.975
ENSG00000122966 E018 60.8860326 0.1660052298 3.912910e-01 6.214527e-01 12 119697976 119698054 79 - 1.697 1.811 0.385
ENSG00000122966 E019 3.9516583 0.2985490927 9.770629e-01 9.902823e-01 12 119698055 119698185 131 - 0.647 0.703 0.235
ENSG00000122966 E020 56.2327660 0.6172692914 3.198223e-01 5.595375e-01 12 119700745 119700825 81 - 1.580 1.807 0.768
ENSG00000122966 E021 71.7515631 0.0183699072 8.478651e-02 2.542772e-01 12 119701624 119701752 129 - 1.750 1.889 0.470
ENSG00000122966 E022 34.4239177 0.0013317280 4.855244e-02 1.762913e-01 12 119701850 119701851 2 - 1.435 1.575 0.481
ENSG00000122966 E023 71.9695479 0.0051502601 9.966742e-02 2.811599e-01 12 119701852 119701958 107 - 1.776 1.878 0.345
ENSG00000122966 E024 63.9653799 0.0006521372 8.632003e-02 2.570555e-01 12 119704363 119704455 93 - 1.735 1.828 0.316
ENSG00000122966 E025 70.2600714 0.0007147715 1.144179e-01 3.065036e-01 12 119708179 119708318 140 - 1.777 1.862 0.284
ENSG00000122966 E026 4.3141659 0.1443027333 3.953721e-01 6.246351e-01 12 119708516 119710250 1735 - 0.811 0.647 -0.671
ENSG00000122966 E027 35.4218691 0.0010080221 2.455970e-01 4.831008e-01 12 119710251 119710294 44 - 1.487 1.572 0.292
ENSG00000122966 E028 51.7188709 0.0007794680 9.256628e-01 9.649902e-01 12 119710295 119710386 92 - 1.691 1.709 0.059
ENSG00000122966 E029 45.9367119 0.0012055093 9.170499e-01 9.607398e-01 12 119710540 119710620 81 - 1.639 1.657 0.061
ENSG00000122966 E030 15.8747905 0.0933735201 4.255034e-01 6.476908e-01 12 119710621 119711048 428 - 1.267 1.172 -0.336
ENSG00000122966 E031 11.9253262 0.0383211612 4.306854e-01 6.516535e-01 12 119711049 119711093 45 - 1.143 1.061 -0.294
ENSG00000122966 E032 6.6273490 0.2526482907 3.216178e-01 5.611352e-01 12 119711094 119711134 41 - 0.946 0.804 -0.544
ENSG00000122966 E033 40.3322054 0.1172877069 2.640743e-01 5.033377e-01 12 119711135 119712177 1043 - 1.665 1.555 -0.374
ENSG00000122966 E034 50.2297861 0.0054454929 2.166911e-01 4.495263e-01 12 119712178 119712249 72 - 1.626 1.716 0.304
ENSG00000122966 E035 49.3563218 0.0008134515 3.260383e-01 5.652497e-01 12 119712250 119712309 60 - 1.639 1.704 0.222
ENSG00000122966 E036 43.8772356 0.0008582624 2.774829e-01 5.175449e-01 12 119712310 119712347 38 - 1.584 1.659 0.253
ENSG00000122966 E037 4.6576767 0.1195134960 4.773860e-01 6.853011e-01 12 119712348 119712590 243 - 0.793 0.694 -0.402
ENSG00000122966 E038 54.9148952 0.0006633438 3.235293e-02 1.342489e-01 12 119712591 119712695 105 - 1.647 1.770 0.414
ENSG00000122966 E039 2.9600159 0.0954769911 8.231678e-01 9.097803e-01 12 119713019 119713202 184 - 0.604 0.566 -0.169
ENSG00000122966 E040 27.9728521 0.0012394985 1.400475e-01 3.475687e-01 12 119713203 119713212 10 - 1.368 1.485 0.402
ENSG00000122966 E041 44.5822738 0.0009296401 2.792183e-01 5.193544e-01 12 119713213 119713294 82 - 1.594 1.668 0.251
ENSG00000122966 E042 62.9729535 0.0007189038 9.037002e-01 9.537632e-01 12 119713468 119713633 166 - 1.783 1.791 0.025
ENSG00000122966 E043 26.4520028 0.0026544773 7.069455e-01 8.398826e-01 12 119713634 119713648 15 - 1.399 1.440 0.142
ENSG00000122966 E044 0.3337900 0.0293982289 6.598209e-01   12 119713649 119713818 170 - 0.155 0.094 -0.827
ENSG00000122966 E045 25.8062539 0.0015256583 2.726966e-01 5.125216e-01 12 119714197 119714208 12 - 1.352 1.445 0.321
ENSG00000122966 E046 47.5979645 0.0012763064 7.772433e-01 8.830788e-01 12 119714209 119714334 126 - 1.656 1.685 0.098
ENSG00000122966 E047 53.7356275 0.0017106612 9.533644e-02 2.735637e-01 12 119718245 119718409 165 - 1.656 1.758 0.348
ENSG00000122966 E048 48.3440537 0.0232031725 8.317283e-01 9.148273e-01 12 119718699 119718804 106 - 1.649 1.685 0.125
ENSG00000122966 E049 24.3379640 0.0253210622 6.088703e-01 7.761392e-01 12 119718805 119718816 12 - 1.406 1.367 -0.137
ENSG00000122966 E050 23.3229025 0.0017093509 1.055864e-02 6.049246e-02 12 119718817 119718861 45 - 1.468 1.294 -0.604
ENSG00000122966 E051 2.0466476 0.2237174640 9.992186e-01 1.000000e+00 12 119718862 119720477 1616 - 0.439 0.474 0.183
ENSG00000122966 E052 36.3917618 0.0012497073 5.755567e-01 7.540309e-01 12 119720478 119720523 46 - 1.569 1.549 -0.071
ENSG00000122966 E053 42.5234116 0.0042795452 2.680252e-01 5.077086e-01 12 119720524 119720585 62 - 1.660 1.607 -0.181
ENSG00000122966 E054 64.6638717 0.0024091196 9.121430e-02 2.659035e-01 12 119721309 119721449 141 - 1.846 1.777 -0.234
ENSG00000122966 E055 0.5117739 0.0218571999 2.767485e-01   12 119721450 119723327 1878 - 0.270 0.094 -1.828
ENSG00000122966 E056 0.0000000       12 119726572 119728501 1930 -      
ENSG00000122966 E057 60.6718564 0.0039664209 1.370646e-01 3.430564e-01 12 119728502 119728606 105 - 1.818 1.751 -0.226
ENSG00000122966 E058 61.0860252 0.0010447083 6.417019e-01 7.979442e-01 12 119730495 119730630 136 - 1.755 1.790 0.120
ENSG00000122966 E059 81.0396819 0.0006387259 8.205305e-03 5.027962e-02 12 119734164 119734357 194 - 1.958 1.864 -0.316
ENSG00000122966 E060 0.1426347 0.0319597773 2.719139e-01   12 119734358 119734406 49 - 0.155 0.000 -12.596
ENSG00000122966 E061 74.8298134 0.0005253240 2.908034e-03 2.284761e-02 12 119735160 119735357 198 - 1.933 1.822 -0.373
ENSG00000122966 E062 0.0000000       12 119740711 119742410 1700 -      
ENSG00000122966 E063 34.7484004 0.0010004842 7.844972e-01 8.872249e-01 12 119742411 119742464 54 - 1.516 1.546 0.102
ENSG00000122966 E064 0.0000000       12 119742465 119742731 267 -      
ENSG00000122966 E065 0.0000000       12 119742732 119742864 133 -      
ENSG00000122966 E066 61.1740052 0.0006369627 5.666978e-02 1.952531e-01 12 119752050 119752247 198 - 1.825 1.750 -0.253
ENSG00000122966 E067 62.9799059 0.0009640936 6.516241e-05 1.044561e-03 12 119757371 119757512 142 - 1.892 1.722 -0.572
ENSG00000122966 E068 39.5482109 0.0019660813 4.703171e-04 5.406170e-03 12 119757513 119757545 33 - 1.703 1.512 -0.652
ENSG00000122966 E069 54.0013194 0.0018956526 1.580848e-03 1.418195e-02 12 119758591 119758700 110 - 1.814 1.665 -0.503
ENSG00000122966 E070 52.9346549 0.0008025823 8.071367e-03 4.964879e-02 12 119760939 119761055 117 - 1.790 1.672 -0.398
ENSG00000122966 E071 46.8521834 0.0020585910 3.771567e-02 1.488799e-01 12 119767087 119767182 96 - 1.728 1.627 -0.342
ENSG00000122966 E072 0.1779838 0.0352197438 2.713982e-01   12 119769110 119769545 436 - 0.155 0.000 -12.558
ENSG00000122966 E073 0.3150090 0.0279223279 6.609383e-01   12 119769546 119770117 572 - 0.155 0.094 -0.825
ENSG00000122966 E074 0.3150090 0.0279223279 6.609383e-01   12 119770118 119770784 667 - 0.155 0.094 -0.825
ENSG00000122966 E075 41.2329070 0.0009310891 3.439078e-01 5.815464e-01 12 119770785 119770910 126 - 1.635 1.594 -0.138
ENSG00000122966 E076 0.2027342 0.0407609598 8.453104e-01   12 119770911 119772534 1624 - 0.000 0.094 10.836
ENSG00000122966 E077 0.0000000       12 119772535 119772769 235 -      
ENSG00000122966 E078 43.7303079 0.0010074462 1.250211e-01 3.237539e-01 12 119772770 119772910 141 - 1.676 1.605 -0.243
ENSG00000122966 E079 0.0000000       12 119775775 119775785 11 -      
ENSG00000122966 E080 27.3730149 0.0016644956 7.640898e-02 2.375470e-01 12 119775786 119775839 54 - 1.498 1.389 -0.376
ENSG00000122966 E081 0.0000000       12 119775840 119776357 518 -      
ENSG00000122966 E082 38.9506198 0.0009639025 7.281229e-03 4.597755e-02 12 119776358 119776408 51 - 1.668 1.527 -0.479
ENSG00000122966 E083 0.1308682 0.0310284473 8.465757e-01   12 119776409 119776671 263 - 0.000 0.094 10.917
ENSG00000122966 E084 59.9861032 0.0012703109 6.752659e-06 1.493367e-04 12 119776672 119776842 171 - 1.889 1.689 -0.676
ENSG00000122966 E085 1.0708357 0.0441506992 9.080013e-01   12 119776843 119777104 262 - 0.269 0.296 0.185
ENSG00000122966 E086 0.3150090 0.0279223279 6.609383e-01   12 119782156 119782517 362 - 0.155 0.094 -0.825
ENSG00000122966 E087 47.8200390 0.0021615721 8.763377e-06 1.871508e-04 12 119782518 119782637 120 - 1.807 1.580 -0.772
ENSG00000122966 E088 5.6594724 0.4225652945 7.463864e-01 8.646219e-01 12 119782638 119783907 1270 - 0.779 0.817 0.150
ENSG00000122966 E089 46.3889254 0.0200614263 7.469592e-02 2.342020e-01 12 119783908 119784011 104 - 1.747 1.599 -0.504
ENSG00000122966 E090 34.2049366 0.0022927555 2.602054e-02 1.153817e-01 12 119784012 119784051 40 - 1.603 1.475 -0.440
ENSG00000122966 E091 0.5530924 0.0238552559 9.671146e-01   12 119784189 119784959 771 - 0.155 0.172 0.175
ENSG00000122966 E092 47.9618503 0.0099725237 1.118307e-02 6.312797e-02 12 119784960 119785065 106 - 1.769 1.601 -0.568
ENSG00000122966 E093 53.9427042 0.0011745437 6.852423e-05 1.089837e-03 12 119803206 119803389 184 - 1.830 1.645 -0.628
ENSG00000122966 E094 0.1723744 0.0332860841 8.457665e-01   12 119803390 119803500 111 - 0.000 0.094 10.899
ENSG00000122966 E095 0.0000000       12 119804097 119804162 66 -      
ENSG00000122966 E096 0.0000000       12 119804163 119804522 360 -      
ENSG00000122966 E097 46.3889276 0.0042888312 1.206170e-02 6.669123e-02 12 119822820 119822973 154 - 1.741 1.602 -0.471
ENSG00000122966 E098 52.5629877 0.0008134149 5.214084e-04 5.868324e-03 12 119825165 119825368 204 - 1.807 1.649 -0.536
ENSG00000122966 E099 42.9623226 0.0066207215 1.119664e-03 1.081720e-02 12 119832771 119832864 94 - 1.743 1.544 -0.675
ENSG00000122966 E100 45.5450092 0.0007938400 3.608867e-04 4.345353e-03 12 119834086 119834228 143 - 1.755 1.580 -0.593
ENSG00000122966 E101 39.9272029 0.0016469202 6.164143e-05 9.961111e-04 12 119850174 119850275 102 - 1.717 1.499 -0.745
ENSG00000122966 E102 55.9918889 0.0007596427 1.671281e-07 5.888421e-06 12 119857523 119857698 176 - 1.877 1.642 -0.796
ENSG00000122966 E103 50.9408584 0.0032420641 2.100882e-03 1.774284e-02 12 119869060 119869201 142 - 1.796 1.640 -0.527
ENSG00000122966 E104 30.3267449 0.0013459293 8.458595e-01 9.225963e-01 12 119876073 119876181 109 - 1.480 1.481 0.002
ENSG00000122966 E105 14.7832280 0.0024745552 7.585829e-01 8.717161e-01 12 119877249 119877320 72 - 1.156 1.197 0.147