ENSG00000117139

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000367264 ENSG00000117139 HEK293_OSMI2_6hA HEK293_TMG_6hB KDM5B protein_coding protein_coding 12.65626 14.05684 12.85158 3.740829 0.3878591 -0.12923 1.0357792 1.13355356 0.8973921 0.28905566 0.4576402 -0.3337259 0.08198750 0.081533333 0.07176667 -0.009766667 9.031982e-01 7.333326e-10 FALSE TRUE
ENST00000648056 ENSG00000117139 HEK293_OSMI2_6hA HEK293_TMG_6hB KDM5B protein_coding protein_coding 12.65626 14.05684 12.85158 3.740829 0.3878591 -0.12923 0.1708005 0.38938131 0.0000000 0.38938131 0.0000000 -5.3196949 0.01659167 0.053566667 0.00000000 -0.053566667 9.234903e-01 7.333326e-10 FALSE TRUE
ENST00000649542 ENSG00000117139 HEK293_OSMI2_6hA HEK293_TMG_6hB KDM5B protein_coding processed_transcript 12.65626 14.05684 12.85158 3.740829 0.3878591 -0.12923 6.2494609 7.70151324 6.8560789 2.48863355 0.6852321 -0.1675276 0.48916250 0.527633333 0.53123333 0.003600000 1.000000e+00 7.333326e-10 FALSE TRUE
ENST00000650569 ENSG00000117139 HEK293_OSMI2_6hA HEK293_TMG_6hB KDM5B protein_coding protein_coding 12.65626 14.05684 12.85158 3.740829 0.3878591 -0.12923 2.1116065 3.49850720 1.6157887 1.39870447 0.3090829 -1.1097175 0.16255417 0.222633333 0.12576667 -0.096866667 6.733588e-01 7.333326e-10 FALSE TRUE
MSTRG.2859.19 ENSG00000117139 HEK293_OSMI2_6hA HEK293_TMG_6hB KDM5B protein_coding   12.65626 14.05684 12.85158 3.740829 0.3878591 -0.12923 0.6255777 0.00000000 1.2475797 0.00000000 0.2585831 6.9745060 0.05086667 0.000000000 0.09803333 0.098033333 7.333326e-10 7.333326e-10 TRUE TRUE
MSTRG.2859.24 ENSG00000117139 HEK293_OSMI2_6hA HEK293_TMG_6hB KDM5B protein_coding   12.65626 14.05684 12.85158 3.740829 0.3878591 -0.12923 0.4766350 0.02155255 0.9114297 0.02155255 0.4563521 4.8680457 0.03785833 0.002966667 0.06946667 0.066500000 4.980049e-01 7.333326e-10 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000117139 E001 0.0000000       1 202724495 202724713 219 -      
ENSG00000117139 E002 0.0000000       1 202724714 202724886 173 -      
ENSG00000117139 E003 13.2799779 0.0028810216 5.102185e-02 1.821153e-01 1 202724887 202726503 1617 - 1.028 1.215 0.671
ENSG00000117139 E004 10.8355858 0.0036302939 8.253783e-01 9.111632e-01 1 202726504 202727403 900 - 1.058 1.076 0.065
ENSG00000117139 E005 1.0821019 0.4861945318 5.913560e-02   1 202727404 202727404 1 - 0.000 0.464 14.338
ENSG00000117139 E006 1.2129700 0.4674851138 4.415628e-02   1 202727405 202727411 7 - 0.000 0.499 14.526
ENSG00000117139 E007 1.2848361 0.1778075428 1.278500e-02   1 202727412 202727416 5 - 0.000 0.509 15.078
ENSG00000117139 E008 1.4157043 0.1537765421 7.743926e-03 4.810508e-02 1 202727417 202727426 10 - 0.000 0.543 15.302
ENSG00000117139 E009 4.5743456 0.0063483764 6.806153e-01 8.231432e-01 1 202727427 202727434 8 - 0.707 0.760 0.217
ENSG00000117139 E010 8.1014050 0.0055884191 2.735379e-02 1.193644e-01 1 202727435 202727444 10 - 0.766 1.034 1.021
ENSG00000117139 E011 8.9409841 0.0045818938 6.537475e-03 4.239722e-02 1 202727445 202727447 3 - 0.766 1.087 1.213
ENSG00000117139 E012 24.9015691 0.0016130718 3.182283e-04 3.913853e-03 1 202727448 202727493 46 - 1.231 1.495 0.918
ENSG00000117139 E013 54.0094136 0.0007933801 2.565405e-05 4.715497e-04 1 202727494 202727582 89 - 1.591 1.803 0.719
ENSG00000117139 E014 75.8223523 0.0006260168 1.020116e-06 2.890693e-05 1 202727583 202727674 92 - 1.740 1.949 0.705
ENSG00000117139 E015 235.8086769 0.0003018376 5.033720e-13 5.462245e-11 1 202727675 202728203 529 - 2.255 2.429 0.579
ENSG00000117139 E016 91.2322946 0.0084058779 4.315286e-03 3.091869e-02 1 202728204 202728290 87 - 1.863 2.017 0.520
ENSG00000117139 E017 107.8040268 0.0004196507 5.676393e-05 9.299634e-04 1 202728291 202728447 157 - 1.941 2.081 0.469
ENSG00000117139 E018 67.2979854 0.0007356337 3.443378e-05 6.068542e-04 1 202728448 202728480 33 - 1.703 1.891 0.632
ENSG00000117139 E019 129.1479131 0.0022418830 3.919163e-08 1.602996e-06 1 202728481 202728614 134 - 1.960 2.181 0.743
ENSG00000117139 E020 107.3273193 0.0047408682 2.040261e-06 5.312531e-05 1 202728615 202728697 83 - 1.868 2.107 0.801
ENSG00000117139 E021 79.9795942 0.0154960198 7.280708e-03 4.597597e-02 1 202728698 202728737 40 - 1.754 1.978 0.754
ENSG00000117139 E022 224.2775765 0.0039060382 2.618715e-03 2.108498e-02 1 202728738 202729103 366 - 2.266 2.392 0.421
ENSG00000117139 E023 96.3244567 0.0004942215 2.716649e-02 1.187990e-01 1 202729104 202729173 70 - 1.930 2.009 0.266
ENSG00000117139 E024 1.3208055 0.0135957096 6.267338e-02   1 202729174 202729474 301 - 0.137 0.471 2.395
ENSG00000117139 E025 2.2192668 0.0101012712 1.351022e-01 3.398579e-01 1 202729475 202729706 232 - 0.326 0.580 1.328
ENSG00000117139 E026 152.8091556 0.0004168575 2.046744e-03 1.737574e-02 1 202729707 202729904 198 - 2.124 2.214 0.300
ENSG00000117139 E027 128.4426614 0.0003688905 1.019426e-02 5.895119e-02 1 202729905 202730027 123 - 2.054 2.134 0.267
ENSG00000117139 E028 0.6260739 0.1370652339 8.339985e-01   1 202730028 202730908 881 - 0.242 0.192 -0.421
ENSG00000117139 E029 136.9671365 0.0003511849 5.263365e-02 1.858272e-01 1 202730909 202731063 155 - 2.093 2.149 0.190
ENSG00000117139 E030 1.5854426 0.0631148550 5.000868e-01 7.008131e-01 1 202731064 202731827 764 - 0.457 0.330 -0.713
ENSG00000117139 E031 101.5012394 0.0044390314 9.540911e-02 2.737121e-01 1 202731828 202731939 112 - 1.949 2.028 0.264
ENSG00000117139 E032 7.1454252 0.2006703016 3.892127e-01 6.198866e-01 1 202731940 202733400 1461 - 1.004 0.799 -0.780
ENSG00000117139 E033 210.8152560 0.0009582134 1.621287e-01 3.799494e-01 1 202733401 202733886 486 - 2.293 2.328 0.115
ENSG00000117139 E034 1.5160927 0.3445197635 3.531541e-01 5.901431e-01 1 202733887 202734315 429 - 0.242 0.478 1.431
ENSG00000117139 E035 0.7249894 0.0501176514 4.635457e-01   1 202735172 202735428 257 - 0.325 0.192 -1.004
ENSG00000117139 E036 100.7952438 0.0060580147 8.338415e-01 9.159302e-01 1 202735429 202735504 76 - 1.992 2.000 0.028
ENSG00000117139 E037 104.9243343 0.0041287618 9.243850e-01 9.645166e-01 1 202735505 202735587 83 - 2.016 2.011 -0.018
ENSG00000117139 E038 143.2067159 0.0022447773 5.013818e-01 7.017907e-01 1 202736213 202736392 180 - 2.136 2.158 0.074
ENSG00000117139 E039 109.7660670 0.0003816813 4.156957e-01 6.403227e-01 1 202740674 202740812 139 - 2.020 2.044 0.080
ENSG00000117139 E040 115.8413404 0.0018921004 1.145843e-01 3.067992e-01 1 202741367 202741545 179 - 2.025 2.086 0.204
ENSG00000117139 E041 108.6162598 0.0004175107 7.333677e-01 8.562726e-01 1 202741546 202741722 177 - 2.038 2.023 -0.052
ENSG00000117139 E042 87.2368218 0.0006072562 6.606754e-01 8.103615e-01 1 202742391 202742505 115 - 1.947 1.927 -0.067
ENSG00000117139 E043 91.6407792 0.0007101710 1.891057e-01 4.158402e-01 1 202742655 202742805 151 - 1.983 1.930 -0.180
ENSG00000117139 E044 0.0000000       1 202742806 202743304 499 -      
ENSG00000117139 E045 0.0000000       1 202745555 202745857 303 -      
ENSG00000117139 E046 103.8121088 0.0005026933 1.164322e-01 3.098648e-01 1 202745858 202745976 119 - 2.044 1.983 -0.205
ENSG00000117139 E047 49.2718562 0.0032779958 9.225476e-02 2.679233e-01 1 202745977 202745982 6 - 1.749 1.645 -0.349
ENSG00000117139 E048 125.6403553 0.0009421811 4.167204e-04 4.894101e-03 1 202746142 202746323 182 - 2.163 2.039 -0.418
ENSG00000117139 E049 0.4762370 0.0217681645 7.367329e-01   1 202746324 202747565 1242 - 0.137 0.193 0.590
ENSG00000117139 E050 0.5008152 0.0371208812 5.366705e-02   1 202748397 202748944 548 - 0.326 0.000 -15.685
ENSG00000117139 E051 111.2437125 0.0069185547 1.288457e-01 3.299700e-01 1 202748945 202749139 195 - 2.087 2.011 -0.254
ENSG00000117139 E052 91.0158044 0.0082337956 2.115080e-02 9.982472e-02 1 202750659 202750778 120 - 2.034 1.898 -0.456
ENSG00000117139 E053 78.2145825 0.0056828086 7.282600e-03 4.598450e-02 1 202752905 202753030 126 - 1.975 1.826 -0.501
ENSG00000117139 E054 48.4164559 0.0010303473 1.377837e-02 7.345190e-02 1 202753031 202753067 37 - 1.757 1.625 -0.448
ENSG00000117139 E055 0.4654660 0.0280422799 5.282691e-02   1 202754997 202755270 274 - 0.325 0.000 -15.744
ENSG00000117139 E056 103.6022262 0.0025017307 8.723896e-04 8.869773e-03 1 202755271 202755452 182 - 2.088 1.943 -0.487
ENSG00000117139 E057 113.8187251 0.0004203133 9.316272e-06 1.973453e-04 1 202756358 202756516 159 - 2.132 1.978 -0.517
ENSG00000117139 E058 0.0000000       1 202758269 202758390 122 -      
ENSG00000117139 E059 67.8737755 0.0006976897 5.602348e-04 6.224452e-03 1 202758391 202758439 49 - 1.914 1.760 -0.521
ENSG00000117139 E060 70.4384429 0.0162729100 3.981663e-02 1.542764e-01 1 202758440 202758510 71 - 1.926 1.784 -0.476
ENSG00000117139 E061 0.0000000       1 202758511 202758876 366 -      
ENSG00000117139 E062 0.0000000       1 202758877 202759324 448 -      
ENSG00000117139 E063 80.1790542 0.0024704467 1.418890e-02 7.509356e-02 1 202760415 202760529 115 - 1.963 1.851 -0.377
ENSG00000117139 E064 49.2351474 0.0054991587 4.301860e-01 6.512400e-01 1 202760530 202760573 44 - 1.717 1.671 -0.155
ENSG00000117139 E065 71.6915846 0.0005683466 7.594999e-02 2.366659e-01 1 202762699 202762808 110 - 1.896 1.817 -0.267
ENSG00000117139 E066 0.3453689 0.0258918766 8.441230e-01   1 202762809 202762945 137 - 0.137 0.107 -0.407
ENSG00000117139 E067 46.7619956 0.0016021425 2.670622e-01 5.066729e-01 1 202764049 202764073 25 - 1.703 1.639 -0.216
ENSG00000117139 E068 63.1263377 0.0007863208 2.035769e-02 9.715340e-02 1 202764074 202764145 72 - 1.858 1.747 -0.373
ENSG00000117139 E069 9.6072101 0.0509084425 2.449550e-02 1.106503e-01 1 202764146 202766396 2251 - 1.190 0.837 -1.304
ENSG00000117139 E070 4.6286144 0.0070996054 9.707924e-01 9.872310e-01 1 202766397 202766504 108 - 0.737 0.739 0.006
ENSG00000117139 E071 1.4734417 0.0783544444 5.811911e-02 1.985570e-01 1 202766505 202766925 421 - 0.558 0.193 -2.222
ENSG00000117139 E072 61.7431113 0.0065938059 1.527652e-02 7.911345e-02 1 202766926 202767030 105 - 1.875 1.719 -0.526
ENSG00000117139 E073 42.1168088 0.0020155546 5.115777e-03 3.522385e-02 1 202767031 202767051 21 - 1.715 1.550 -0.564
ENSG00000117139 E074 38.9879928 0.0157901299 4.825893e-02 1.756123e-01 1 202767052 202767060 9 - 1.692 1.511 -0.616
ENSG00000117139 E075 0.3228314 0.3898484900 2.286814e-01   1 202767061 202767209 149 - 0.242 0.000 -13.953
ENSG00000117139 E076 2.4661362 0.0972891497 4.555016e-02 1.689027e-01 1 202770097 202770925 829 - 0.735 0.324 -1.996
ENSG00000117139 E077 4.5796766 0.0978405587 2.229176e-01 4.568625e-01 1 202770926 202772694 1769 - 0.867 0.613 -1.036
ENSG00000117139 E078 0.9798287 0.0503217673 2.773686e-01   1 202772695 202773053 359 - 0.397 0.193 -1.420
ENSG00000117139 E079 0.4986023 0.0330106525 5.328122e-02   1 202773054 202773117 64 - 0.326 0.000 -15.712
ENSG00000117139 E080 65.7151583 0.0187223759 2.830871e-02 1.221938e-01 1 202773118 202773188 71 - 1.919 1.725 -0.657
ENSG00000117139 E081 46.5716616 0.0080333479 4.684612e-05 7.865121e-04 1 202773189 202773216 28 - 1.808 1.524 -0.962
ENSG00000117139 E082 67.3915169 0.0127025145 7.109622e-04 7.534806e-03 1 202773217 202773284 68 - 1.950 1.701 -0.840
ENSG00000117139 E083 46.1450401 0.0093668931 4.357635e-05 7.404709e-04 1 202773285 202773288 4 - 1.805 1.511 -1.000
ENSG00000117139 E084 49.3556124 0.0115101335 1.274665e-04 1.829045e-03 1 202774613 202774629 17 - 1.832 1.544 -0.978
ENSG00000117139 E085 73.4020977 0.0008060727 3.178663e-08 1.327293e-06 1 202774630 202774735 106 - 1.985 1.745 -0.809
ENSG00000117139 E086 0.0000000       1 202776105 202776220 116 -      
ENSG00000117139 E087 48.3070022 0.0031696450 1.022424e-04 1.523824e-03 1 202777017 202777094 78 - 1.805 1.581 -0.758
ENSG00000117139 E088 0.6622309 0.1963398482 3.952579e-02   1 202777095 202777581 487 - 0.398 0.000 -15.371
ENSG00000117139 E089 0.0000000       1 202806490 202806976 487 -      
ENSG00000117139 E090 0.9742192 0.1572026676 8.240229e-01   1 202806977 202807348 372 - 0.327 0.264 -0.422
ENSG00000117139 E091 0.1426347 0.0326197173 3.881443e-01   1 202807963 202808101 139 - 0.137 0.000 -14.154
ENSG00000117139 E092 20.7056060 0.0043767783 3.739956e-02 1.480008e-01 1 202808102 202808116 15 - 1.426 1.256 -0.590
ENSG00000117139 E093 43.2626087 0.0095158965 7.242339e-01 8.506795e-01 1 202808117 202808487 371 - 1.660 1.628 -0.109