ENSG00000116641

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000340370 ENSG00000116641 HEK293_OSMI2_6hA HEK293_TMG_6hB DOCK7 protein_coding protein_coding 19.93789 10.93535 25.90887 2.585063 2.090238 1.243686 2.593703 1.1351580 4.052749 0.3827552 0.2626325 1.8269095 0.11503750 0.09653333 0.15993333 0.0634000 4.689523e-01 4.066116e-12 FALSE TRUE
ENST00000454575 ENSG00000116641 HEK293_OSMI2_6hA HEK293_TMG_6hB DOCK7 protein_coding protein_coding 19.93789 10.93535 25.90887 2.585063 2.090238 1.243686 1.250395 0.6170338 2.086774 0.2753323 1.0441007 1.7415565 0.05532917 0.05400000 0.07580000 0.0218000 1.000000e+00 4.066116e-12 FALSE TRUE
ENST00000635123 ENSG00000116641 HEK293_OSMI2_6hA HEK293_TMG_6hB DOCK7 protein_coding protein_coding 19.93789 10.93535 25.90887 2.585063 2.090238 1.243686 6.324599 1.0461134 11.152087 0.2733133 0.1143790 3.4017701 0.24475417 0.09426667 0.43576667 0.3415000 4.066116e-12 4.066116e-12 FALSE TRUE
ENST00000636635 ENSG00000116641 HEK293_OSMI2_6hA HEK293_TMG_6hB DOCK7 protein_coding processed_transcript 19.93789 10.93535 25.90887 2.585063 2.090238 1.243686 4.433403 4.7955297 1.293118 0.9515099 0.6590613 -1.8827279 0.28031667 0.45240000 0.04656667 -0.4058333 1.236076e-01 4.066116e-12   FALSE
ENST00000637255 ENSG00000116641 HEK293_OSMI2_6hA HEK293_TMG_6hB DOCK7 protein_coding protein_coding 19.93789 10.93535 25.90887 2.585063 2.090238 1.243686 3.625627 2.7711506 3.364031 0.8245046 0.4543234 0.2787912 0.20977083 0.24413333 0.12930000 -0.1148333 5.863499e-02 4.066116e-12 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000116641 E001 1.9578222 1.8227869201 1.000000e+00 1.000000e+00 1 62452272 62452299 28 - 0.495 0.000 -14.772
ENSG00000116641 E002 0.7119354 1.1273650127 1.000000e+00   1 62453516 62453580 65 - 0.243 0.000 -13.238
ENSG00000116641 E003 6.9248016 1.6131675744 4.979458e-01 6.994528e-01 1 62453581 62454297 717 - 0.934 0.000 -16.574
ENSG00000116641 E004 1.2458869 1.5196315811 1.000000e+00   1 62454298 62454725 428 - 0.369 0.000 -14.077
ENSG00000116641 E005 0.5173834 0.0573767953 5.438646e-01   1 62454726 62454829 104 - 0.184 0.000 -12.720
ENSG00000116641 E006 0.5421338 0.0216556063 6.672607e-01   1 62454830 62454897 68 - 0.131 0.203 0.760
ENSG00000116641 E007 0.7095188 0.0706778576 2.531644e-01   1 62454898 62455009 112 - 0.130 0.342 1.776
ENSG00000116641 E008 0.5481031 0.2351239195 1.482432e-01   1 62455010 62455012 3 - 0.070 0.347 2.815
ENSG00000116641 E009 0.8687216 0.1336306370 4.291027e-01   1 62455013 62455032 20 - 0.183 0.344 1.207
ENSG00000116641 E010 114.8403827 0.0004512883 1.028379e-10 7.276765e-09 1 62455033 62455413 381 - 1.928 2.165 0.796
ENSG00000116641 E011 77.7408521 0.0036041779 4.257800e-06 1.002041e-04 1 62455414 62455454 41 - 1.761 2.000 0.806
ENSG00000116641 E012 45.4989763 0.0008731446 2.174018e-04 2.865556e-03 1 62455455 62455456 2 - 1.540 1.754 0.728
ENSG00000116641 E013 122.5576958 0.0004699782 3.031671e-11 2.395754e-09 1 62457538 62457705 168 - 1.956 2.194 0.796
ENSG00000116641 E014 2.1008480 0.4994676227 1.459878e-01 3.563566e-01 1 62457706 62459199 1494 - 0.275 0.760 2.430
ENSG00000116641 E015 0.3150090 0.0568582586 3.645139e-01   1 62460934 62460970 37 - 0.070 0.203 1.764
ENSG00000116641 E016 59.0281217 0.0006343235 4.450507e-06 1.040901e-04 1 62473982 62474009 28 - 1.643 1.876 0.787
ENSG00000116641 E017 76.9769398 0.0006665209 5.888029e-06 1.328171e-04 1 62474010 62474088 79 - 1.766 1.971 0.691
ENSG00000116641 E018 40.6667472 0.0008492518 1.875106e-02 9.155462e-02 1 62475208 62475211 4 - 1.510 1.658 0.503
ENSG00000116641 E019 106.8621612 0.0072571743 4.526626e-03 3.208101e-02 1 62475212 62475351 140 - 1.921 2.070 0.503
ENSG00000116641 E020 0.1614157 0.0366829219 1.000000e+00   1 62475352 62475706 355 - 0.070 0.000 -11.129
ENSG00000116641 E021 165.4467426 0.0021127050 1.543191e-04 2.150400e-03 1 62475707 62475943 237 - 2.111 2.253 0.473
ENSG00000116641 E022 60.9544138 0.0007450508 2.617073e-02 1.158292e-01 1 62476067 62476070 4 - 1.688 1.806 0.398
ENSG00000116641 E023 97.0341536 0.0004047251 1.477562e-03 1.345847e-02 1 62476071 62476144 74 - 1.885 2.018 0.446
ENSG00000116641 E024 64.2349407 0.0015387806 5.609673e-03 3.777665e-02 1 62476145 62476156 12 - 1.706 1.854 0.503
ENSG00000116641 E025 0.3453689 0.0279017167 3.685426e-01   1 62476157 62476189 33 - 0.070 0.203 1.763
ENSG00000116641 E026 1.4425182 0.0134087408 9.633060e-01 9.836106e-01 1 62477007 62477043 37 - 0.348 0.340 -0.048
ENSG00000116641 E027 1.4590864 0.0121459648 9.619333e-01 9.829676e-01 1 62477059 62477121 63 - 0.348 0.340 -0.049
ENSG00000116641 E028 87.6215206 0.0016632456 5.490698e-02 1.911300e-01 1 62477700 62477752 53 - 1.853 1.948 0.321
ENSG00000116641 E029 93.3247485 0.0006830687 3.408487e-01 5.787865e-01 1 62477753 62477825 73 - 1.891 1.937 0.154
ENSG00000116641 E030 54.6177736 0.0010352586 6.095956e-01 7.766309e-01 1 62477826 62477834 9 - 1.678 1.653 -0.086
ENSG00000116641 E031 1.1578125 0.2658561872 6.813167e-01   1 62477835 62478700 866 - 0.278 0.338 0.392
ENSG00000116641 E032 0.1723744 0.1733776514 1.350966e-01   1 62478701 62478741 41 - 0.000 0.203 14.613
ENSG00000116641 E033 0.0000000       1 62478742 62479004 263 -      
ENSG00000116641 E034 0.4654660 0.0276378871 5.417127e-01   1 62481399 62481468 70 - 0.184 0.000 -12.713
ENSG00000116641 E035 0.3040503 0.0274424043 1.000000e+00   1 62481469 62481470 2 - 0.130 0.000 -12.127
ENSG00000116641 E036 0.3040503 0.0274424043 1.000000e+00   1 62481471 62481479 9 - 0.130 0.000 -12.127
ENSG00000116641 E037 0.3040503 0.0274424043 1.000000e+00   1 62481480 62481532 53 - 0.130 0.000 -12.127
ENSG00000116641 E038 2.1407615 0.3207497204 1.118867e-01 3.022521e-01 1 62481533 62482860 1328 - 0.311 0.721 2.023
ENSG00000116641 E039 2.9101782 0.0085916223 2.023968e-01 4.326523e-01 1 62482861 62485527 2667 - 0.581 0.340 -1.243
ENSG00000116641 E040 0.3393995 0.0248212018 1.000000e+00   1 62485528 62485653 126 - 0.131 0.000 -12.130
ENSG00000116641 E041 2.2148110 0.0094151479 4.233831e-01 6.461602e-01 1 62485659 62487397 1739 - 0.492 0.340 -0.827
ENSG00000116641 E042 1.1256563 0.0452286154 2.619576e-01   1 62487398 62487412 15 - 0.230 0.445 1.355
ENSG00000116641 E043 0.1426347 0.0338479298 1.000000e+00   1 62487413 62487452 40 - 0.070 0.000 -11.127
ENSG00000116641 E044 0.7437705 0.0172671820 4.051551e-01   1 62487453 62488933 1481 - 0.184 0.339 1.170
ENSG00000116641 E045 116.1108819 0.0004016002 1.004669e-01 2.826264e-01 1 62488934 62489065 132 - 1.979 2.047 0.226
ENSG00000116641 E046 0.3040503 0.0274424043 1.000000e+00   1 62492306 62492703 398 - 0.130 0.000 -12.127
ENSG00000116641 E047 85.7949880 0.0014146618 8.743509e-02 2.590334e-01 1 62492704 62492847 144 - 1.843 1.927 0.284
ENSG00000116641 E048 109.2351617 0.0003632218 1.969841e-03 1.686451e-02 1 62494275 62494467 193 - 1.940 2.062 0.410
ENSG00000116641 E049 5.7411665 0.1710515168 7.293666e-01 8.538680e-01 1 62494468 62495298 831 - 0.795 0.660 -0.555
ENSG00000116641 E050 81.6132715 0.0017861262 4.722746e-02 1.731042e-01 1 62495581 62495681 101 - 1.823 1.921 0.330
ENSG00000116641 E051 0.0000000       1 62495847 62495904 58 -      
ENSG00000116641 E052 110.6460408 0.0004348783 7.821753e-02 2.412265e-01 1 62496339 62496497 159 - 1.958 2.030 0.242
ENSG00000116641 E053 105.2675867 0.0004548755 2.627639e-01 5.019997e-01 1 62504630 62504782 153 - 1.944 1.992 0.164
ENSG00000116641 E054 80.0721678 0.0005420518 4.724192e-01 6.818464e-01 1 62505682 62505790 109 - 1.829 1.866 0.123
ENSG00000116641 E055 48.0414381 0.0007444217 3.496168e-01 5.869214e-01 1 62505791 62505816 26 - 1.605 1.664 0.199
ENSG00000116641 E056 86.7094974 0.0005987658 8.377397e-01 9.181745e-01 1 62507962 62508058 97 - 1.867 1.880 0.043
ENSG00000116641 E057 93.3813055 0.0004038669 4.059069e-01 6.329817e-01 1 62510577 62510673 97 - 1.894 1.934 0.133
ENSG00000116641 E058 1.1254840 0.0142847307 1.233984e-01   1 62510674 62511365 692 - 0.348 0.000 -13.936
ENSG00000116641 E059 9.7975676 0.0033581238 4.069312e-02 1.565332e-01 1 62513444 62513470 27 - 0.894 1.129 0.866
ENSG00000116641 E060 100.4937027 0.0004131686 4.183086e-01 6.423527e-01 1 62513471 62513606 136 - 1.925 1.963 0.126
ENSG00000116641 E061 112.5194179 0.0003755459 4.167884e-01 6.412127e-01 1 62513716 62513898 183 - 1.988 1.960 -0.094
ENSG00000116641 E062 0.0000000       1 62516801 62516841 41 -      
ENSG00000116641 E063 105.7684619 0.0003888021 2.797269e-01 5.198233e-01 1 62528151 62528305 155 - 1.967 1.928 -0.133
ENSG00000116641 E064 103.9541644 0.0006607103 6.623433e-01 8.113473e-01 1 62529277 62529446 170 - 1.951 1.937 -0.047
ENSG00000116641 E065 100.9566402 0.0011769612 6.041491e-02 2.037543e-01 1 62535493 62535632 140 - 1.952 1.869 -0.278
ENSG00000116641 E066 104.1637472 0.0037293073 5.043937e-01 7.038542e-01 1 62537891 62538061 171 - 1.956 1.919 -0.123
ENSG00000116641 E067 89.1563672 0.0062721527 8.424231e-01 9.208469e-01 1 62539545 62539658 114 - 1.877 1.891 0.050
ENSG00000116641 E068 67.9535931 0.0005695855 5.614395e-01 7.442749e-01 1 62539752 62539843 92 - 1.760 1.793 0.113
ENSG00000116641 E069 51.6512650 0.0007245844 6.712195e-01 8.170998e-01 1 62539844 62539892 49 - 1.655 1.635 -0.069
ENSG00000116641 E070 39.8499905 0.0009634022 2.067434e-01 4.378160e-01 1 62542608 62542636 29 - 1.559 1.478 -0.277
ENSG00000116641 E071 55.8946395 0.0006726571 1.946673e-02 9.406457e-02 1 62542637 62542703 67 - 1.710 1.577 -0.452
ENSG00000116641 E072 0.0000000       1 62543286 62543321 36 -      
ENSG00000116641 E073 0.1779838 0.0402975144 1.000000e+00   1 62543639 62543655 17 - 0.070 0.000 -11.131
ENSG00000116641 E074 63.9055883 0.0005828668 6.386168e-04 6.909520e-03 1 62543656 62543745 90 - 1.779 1.591 -0.638
ENSG00000116641 E075 9.9265527 0.1015606362 2.054481e-01 4.364281e-01 1 62544947 62545039 93 - 0.923 1.135 0.777
ENSG00000116641 E076 89.8568433 0.0005043780 2.618364e-05 4.796229e-04 1 62552732 62552901 170 - 1.928 1.731 -0.665
ENSG00000116641 E077 0.0000000       1 62555291 62555328 38 -      
ENSG00000116641 E078 85.6387487 0.0005537169 1.909166e-02 9.277752e-02 1 62555825 62555989 165 - 1.890 1.784 -0.356
ENSG00000116641 E079 36.9472197 0.0028614354 2.882401e-01 5.289811e-01 1 62558989 62558997 9 - 1.529 1.459 -0.239
ENSG00000116641 E080 104.3646610 0.0140730670 1.393274e-01 3.464884e-01 1 62558998 62559220 223 - 1.970 1.890 -0.270
ENSG00000116641 E081 61.9956443 0.0025638282 3.932941e-02 1.530520e-01 1 62561617 62561703 87 - 1.756 1.640 -0.396
ENSG00000116641 E082 74.0833800 0.0006222349 1.627150e-03 1.451028e-02 1 62577262 62577363 102 - 1.838 1.680 -0.536
ENSG00000116641 E083 76.6215686 0.0018852547 1.404781e-05 2.814583e-04 1 62578828 62578966 139 - 1.863 1.622 -0.815
ENSG00000116641 E084 51.6842965 0.0008834382 1.309129e-03 1.222950e-02 1 62583184 62583254 71 - 1.686 1.487 -0.680
ENSG00000116641 E085 2.3267105 0.0091863615 7.495305e-01 8.664733e-01 1 62584105 62584402 298 - 0.467 0.528 0.298
ENSG00000116641 E086 7.7612897 0.0261786942 7.290966e-03 4.602021e-02 1 62584403 62584878 476 - 0.770 1.129 1.349
ENSG00000116641 E087 66.7583624 0.0005364584 1.965952e-02 9.475885e-02 1 62586507 62586624 118 - 1.784 1.664 -0.407
ENSG00000116641 E088 0.0000000       1 62597523 62597541 19 -      
ENSG00000116641 E089 83.2566644 0.0004922887 1.271500e-06 3.498540e-05 1 62618706 62618868 163 - 1.900 1.658 -0.817
ENSG00000116641 E090 70.5744498 0.0006755162 4.064314e-05 6.976881e-04 1 62619900 62619989 90 - 1.825 1.604 -0.749
ENSG00000116641 E091 34.6008979 0.0034559799 5.605575e-03 3.776103e-02 1 62619990 62619993 4 - 1.521 1.300 -0.761
ENSG00000116641 E092 0.9736717 0.7825988398 6.316653e-01   1 62625098 62625258 161 - 0.242 0.323 0.572
ENSG00000116641 E093 97.3377114 0.0014584620 7.609267e-05 1.189897e-03 1 62625259 62625401 143 - 1.957 1.767 -0.641
ENSG00000116641 E094 0.1779838 0.0402975144 1.000000e+00   1 62627559 62629673 2115 - 0.070 0.000 -11.131
ENSG00000116641 E095 95.7111426 0.0004883157 9.441450e-05 1.424716e-03 1 62631240 62631405 166 - 1.948 1.772 -0.593
ENSG00000116641 E096 58.7392179 0.0007595440 7.789198e-04 8.105797e-03 1 62633498 62633578 81 - 1.743 1.549 -0.659
ENSG00000116641 E097 0.0000000       1 62633900 62633935 36 -      
ENSG00000116641 E098 0.0000000       1 62634377 62634772 396 -      
ENSG00000116641 E099 66.8394903 0.0006742865 1.337078e-04 1.905720e-03 1 62634773 62634922 150 - 1.800 1.591 -0.710
ENSG00000116641 E100 0.1426347 0.0338479298 1.000000e+00   1 62634923 62635691 769 - 0.070 0.000 -11.127
ENSG00000116641 E101 48.1355339 0.0015812397 2.240606e-04 2.937820e-03 1 62636537 62636603 67 - 1.664 1.414 -0.856
ENSG00000116641 E102 0.0000000       1 62638311 62638379 69 -      
ENSG00000116641 E103 67.5788776 0.0102426544 2.209347e-03 1.846200e-02 1 62647691 62647776 86 - 1.808 1.572 -0.801
ENSG00000116641 E104 114.4160672 0.0073338085 1.215233e-03 1.154801e-02 1 62648106 62648318 213 - 2.030 1.831 -0.669
ENSG00000116641 E105 70.3758506 0.0005349990 2.600184e-04 3.322191e-03 1 62648415 62648544 130 - 1.821 1.629 -0.651
ENSG00000116641 E106 61.1102195 0.0008810414 1.417575e-03 1.302477e-02 1 62653725 62653793 69 - 1.758 1.577 -0.615
ENSG00000116641 E107 81.3304191 0.0005635153 2.573060e-08 1.100944e-06 1 62653984 62654159 176 - 1.895 1.604 -0.986
ENSG00000116641 E108 41.4651172 0.0010967546 8.239859e-07 2.398967e-05 1 62663025 62663130 106 - 1.618 1.246 -1.287
ENSG00000116641 E109 15.7570587 0.1800296825 4.599001e-07 1.437806e-05 1 62687591 62687656 66 - 0.632 1.678 3.829
ENSG00000116641 E110 27.3022710 0.0469218620 2.120672e-03 1.787843e-02 1 62688227 62688386 160 - 1.270 1.618 1.201