ENSG00000115839

1 Isoform Switch

Summary Plot
Results

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Rows: 1-2 / 2
Columns:
Select all:
isoform_id
gene_id
condition_1
condition_2
gene_name
gene_biotype
iso_biotype
gene_overall_mean
gene_value_1
gene_value_2
gene_stderr_1
gene_stderr_2
gene_log2_fold_change
iso_overall_mean
iso_value_1
iso_value_2
iso_stderr_1
iso_stderr_2
iso_log2_fold_change
IF_overall
IF1
IF2
dIF
isoform_switch_q_value
gene_switch_q_value
PTC
codingPotential
Close
Columns▼Records:
Use the filters above each column to filter and limit table data. Advanced searches can be performed by using the following operators:
<, <=, >, >=, =, *, !, {, }, ||,&&, **[empty]**, **[nonempty]**, **rgx:**
Learn more
TableFilter v0.7.3
https://www.tablefilter.com/
©2015-2025 Max Guglielmi
Close
?
Page of 1
isoform_id	gene_id	condition_1	condition_2	gene_name	gene_biotype	iso_biotype	gene_overall_mean	gene_value_1	gene_value_2	gene_stderr_1	gene_stderr_2	gene_log2_fold_change	iso_overall_mean	iso_value_1	iso_value_2	iso_stderr_1	iso_stderr_2	iso_log2_fold_change	IF_overall	IF1	IF2	dIF	isoform_switch_q_value	gene_switch_q_value	PTC	codingPotential

ENST00000264158	ENSG00000115839	HEK293_OSMI2_6hA	HEK293_TMG_6hB	RAB3GAP1	protein_coding	protein_coding	23.07684	9.465056	38.79889	1.441995	1.535613	2.034181	13.845145	6.445757	21.23801	1.5874027	1.0739082	1.718669	0.6393625	0.6582000	0.5469	-0.1113000	0.67519536	0.03694302	FALSE	TRUE
MSTRG.19280.2	ENSG00000115839	HEK293_OSMI2_6hA	HEK293_TMG_6hB	RAB3GAP1	protein_coding		23.07684	9.465056	38.79889	1.441995	1.535613	2.034181	6.162842	1.259026	12.53109	0.1451686	0.8644146	3.304869	0.2015417	0.1432667	0.3222	0.1789333	0.03694302	0.03694302	FALSE	TRUE

Note:
- The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

Rows: 1-10 / 62
Columns:
Select all:
groupID
featureID
exonBaseMean
dispersion
pvalue
padj
seqnames
start
end
width
strand
HEK293_TMG_6hB
HEK293_OSMI2_6hA
log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
Close
Columns▼Records:
Use the filters above each column to filter and limit table data. Advanced searches can be performed by using the following operators:
<, <=, >, >=, =, *, !, {, }, ||,&&, **[empty]**, **[nonempty]**, **rgx:**
Learn more
TableFilter v0.7.3
https://www.tablefilter.com/
©2015-2025 Max Guglielmi
Close
?
Page of 7
groupID	featureID	exonBaseMean	dispersion	pvalue	padj	seqnames	start	end	width	strand	HEK293_TMG_6hB	HEK293_OSMI2_6hA	log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB

ENSG00000115839	E001	0.3150090	0.0321232064	3.825434e-01		2	135052276	135052278	3	+	0.070	0.203	1.772
ENSG00000115839	E002	1.0422113	0.0155518983	2.639374e-01		2	135052279	135052288	10	+	0.230	0.445	1.353
ENSG00000115839	E003	1.3628298	0.0129155569	5.062567e-01		2	135052289	135052291	3	+	0.311	0.445	0.768
ENSG00000115839	E004	2.1548837	0.0111849223	6.566722e-01	0.8077388347	2	135052292	135052292	1	+	0.438	0.529	0.449
ENSG00000115839	E005	2.3162994	0.0099408198	7.682883e-01	0.8775956017	2	135052293	135052293	1	+	0.465	0.529	0.311
ENSG00000115839	E006	4.4703050	0.0055739949	1.498589e-01	0.3621002321	2	135052294	135052294	1	+	0.617	0.842	0.922
ENSG00000115839	E007	8.8415068	0.0035050713	1.668181e-02	0.0842915594	2	135052295	135052297	3	+	0.841	1.131	1.076
ENSG00000115839	E008	8.8415068	0.0035050713	1.668181e-02	0.0842915594	2	135052298	135052298	1	+	0.841	1.131	1.076
ENSG00000115839	E009	42.1986443	0.0008946866	1.363288e-02	0.0729016123	2	135052299	135052305	7	+	1.594	1.444	-0.513
ENSG00000115839	E010	42.9839210	0.0008966997	2.062696e-02	0.0981094413	2	135052306	135052307	2	+	1.600	1.462	-0.470
ENSG00000115839	E011	76.1842097	0.0021885685	6.978945e-02	0.2243819471	2	135052308	135052325	18	+	1.833	1.752	-0.276
ENSG00000115839	E012	113.2152881	0.0014981854	9.395585e-02	0.2710678134	2	135052430	135052485	56	+	1.996	1.939	-0.191
ENSG00000115839	E013	0.3228314	0.4069612854	1.000000e+00		2	135056391	135056600	210	+	0.131	0.000	-9.933
ENSG00000115839	E014	159.9468202	0.0004638694	3.964141e-03	0.0289474659	2	135058011	135058086	76	+	2.150	2.067	-0.278
ENSG00000115839	E015	23.2825201	0.0166849325	9.151825e-01	0.9597501860	2	135058087	135059066	980	+	1.304	1.329	0.086
ENSG00000115839	E016	14.5961183	0.0027870619	1.228088e-02	0.0675643097	2	135060281	135060537	257	+	1.047	1.302	0.910
ENSG00000115839	E017	41.6137874	0.0263184797	4.378912e-03	0.0312571940	2	135060538	135062781	2244	+	1.472	1.759	0.977
ENSG00000115839	E018	0.3337900	0.0380741112	3.843814e-01		2	135089654	135089872	219	+	0.070	0.203	1.770
ENSG00000115839	E019	204.3328579	0.0003056422	6.336768e-07	0.0000191012	2	135090998	135091130	133	+	2.266	2.129	-0.460
ENSG00000115839	E020	123.6186656	0.0004416045	1.783689e-03	0.0155887582	2	135093615	135093685	71	+	2.044	1.938	-0.355
ENSG00000115839	E021	74.2536123	0.0022741781	4.636572e-02	0.1709538927	2	135093686	135093693	8	+	1.823	1.732	-0.306
ENSG00000115839	E022	175.2966193	0.0045519447	9.128399e-04	0.0092011643	2	135113151	135113270	120	+	2.199	2.063	-0.454
ENSG00000115839	E023	221.0658015	0.0034114214	1.915276e-02	0.0929759708	2	135115216	135115381	166	+	2.288	2.214	-0.248
ENSG00000115839	E024	184.0922872	0.0003412115	4.208207e-02	0.1601313892	2	135120819	135120918	100	+	2.205	2.158	-0.155
ENSG00000115839	E025	0.0000000				2	135124080	135124164	85	+
ENSG00000115839	E026	185.1460652	0.0003187032	3.433448e-03	0.0259547537	2	135124165	135124246	82	+	2.213	2.138	-0.251
ENSG00000115839	E027	133.3546599	0.0003746325	9.628827e-02	0.2752299586	2	135126181	135126249	69	+	2.067	2.024	-0.145
ENSG00000115839	E028	0.1779838	0.0385584218	1.000000e+00		2	135126250	135126582	333	+	0.070	0.000	-8.929
ENSG00000115839	E029	102.1976566	0.0009373162	4.635861e-01	0.6755354851	2	135126583	135126656	74	+	1.947	1.935	-0.041
ENSG00000115839	E030	123.2728288	0.0023518364	7.111613e-01	0.8425521485	2	135129995	135130087	93	+	2.021	2.026	0.018
ENSG00000115839	E031	142.4489216	0.0004568657	9.103940e-01	0.9573568510	2	135130552	135130721	170	+	2.080	2.102	0.074
ENSG00000115839	E032	113.7708753	0.0003394006	2.233259e-01	0.4573570314	2	135132895	135132984	90	+	1.995	1.964	-0.102
ENSG00000115839	E033	180.2580897	0.0025259839	2.238323e-01	0.4580185458	2	135133861	135134033	173	+	2.191	2.164	-0.091
ENSG00000115839	E034	124.8244526	0.0041444983	3.962293e-01	0.6253552911	2	135135265	135135319	55	+	2.031	2.011	-0.066
ENSG00000115839	E035	311.1817310	0.0035895185	4.453678e-01	0.6623495726	2	135135564	135135932	369	+	2.423	2.416	-0.023
ENSG00000115839	E036	0.3040503	0.0244411696	8.313823e-01		2	135148814	135150368	1555	+	0.130	0.000	-9.926
ENSG00000115839	E037	166.7524401	0.0003414954	8.368202e-01	0.9176879074	2	135150369	135150506	138	+	2.151	2.162	0.037
ENSG00000115839	E038	5.0852437	0.1117058143	5.784417e-01	0.7561015348	2	135150507	135153648	3142	+	0.685	0.811	0.508
ENSG00000115839	E039	193.3945744	0.0198750499	2.936849e-01	0.5343175933	2	135153649	135153876	228	+	2.196	2.277	0.268
ENSG00000115839	E040	6.9489607	0.0729670184	4.081816e-01	0.6346058148	2	135153877	135155215	1339	+	0.863	0.717	-0.583
ENSG00000115839	E041	10.1289650	0.0514022930	2.376316e-01	0.4738346353	2	135159627	135160929	1303	+	0.926	1.110	0.679
ENSG00000115839	E042	9.2344772	0.1111260441	1.205187e-01	0.3166569839	2	135160930	135161939	1010	+	0.847	1.154	1.136
ENSG00000115839	E043	2.4643329	0.0089226499	5.794943e-03	0.0387218029	2	135161940	135162382	443	+	0.347	0.803	2.130
ENSG00000115839	E044	2.6663973	0.2343161723	1.224347e-01	0.3196470937	2	135162383	135162554	172	+	0.403	0.764	1.652
ENSG00000115839	E045	124.2883561	0.1957277402	2.444611e-01	0.4816194738	2	135162555	135162651	97	+	1.976	2.155	0.600
ENSG00000115839	E046	1.0226225	0.0918818609	1.430362e-02		2	135162652	135162747	96	+	0.129	0.596	3.082
ENSG00000115839	E047	170.0820548	0.0206447365	2.782320e-01	0.5183443059	2	135162748	135162851	104	+	2.139	2.224	0.284
ENSG00000115839	E048	0.0000000				2	135162852	135162937	86	+
ENSG00000115839	E049	0.1426347	0.0317763028	1.000000e+00		2	135162938	135162985	48	+	0.070	0.000	-8.925
ENSG00000115839	E050	214.7128272	0.0004086198	1.009386e-01	0.2834790110	2	135162986	135163101	116	+	2.246	2.310	0.213
ENSG00000115839	E051	181.6831098	0.0002474850	4.472464e-02	0.1669290556	2	135164594	135164696	103	+	2.171	2.249	0.260
ENSG00000115839	E052	1.9787983	0.1380324889	9.308406e-02	0.2694452614	2	135164697	135164803	107	+	0.313	0.661	1.760
ENSG00000115839	E053	2.9458873	0.0083298061	9.076069e-01	0.9559495352	2	135164804	135166131	1328	+	0.538	0.529	-0.038
ENSG00000115839	E054	0.0000000				2	135167693	135167713	21	+
ENSG00000115839	E055	0.3751086	0.0277601271	2.945662e-02		2	135168254	135168434	181	+	0.000	0.341	13.435
ENSG00000115839	E056	94.7901488	0.0010837772	1.393457e-01	0.3465198501	2	135168545	135168547	3	+	1.892	1.972	0.271
ENSG00000115839	E057	231.1722398	0.0002420731	1.754055e-03	0.0153950537	2	135168548	135168749	202	+	2.269	2.369	0.335
ENSG00000115839	E058	456.2130848	0.0070530405	1.394030e-02	0.0741011451	2	135168750	135169733	984	+	2.551	2.683	0.438
ENSG00000115839	E059	66.5026656	0.0005332690	5.277312e-01	0.7204216337	2	135169734	135169848	115	+	1.746	1.795	0.166
ENSG00000115839	E060	96.8836497	0.0053328318	5.103910e-02	0.1821654183	2	135169849	135170710	862	+	1.885	2.009	0.416
ENSG00000115839	E061	4.5694873	0.0067371193	4.040108e-05	0.0006938747	2	135175327	135175588	262	+	0.466	1.047	2.398
ENSG00000115839	E062	2.3736156	0.0122244767	3.344912e-03	0.0254508965	2	135176249	135176669	421	+	0.312	0.803	2.349

Isoforom Switch Analysis

WANG Ziyi

Date: 19 5月 2022

ENSG00000115839

1 Isoform Switch

TableFilter v0.7.3

2 Differential Exon Usage

TableFilter v0.7.3