ENSG00000115694

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000401869 ENSG00000115694 HEK293_OSMI2_6hA HEK293_TMG_6hB STK25 protein_coding protein_coding 232.606 326.1007 143.97 46.53653 4.127613 -1.179494 67.060269 112.693311 39.075824 17.7042660 1.8047166 -1.527813 0.28322083 0.34410000 0.27176667 -0.07233333 0.30296021 0.01492479 FALSE TRUE
ENST00000403346 ENSG00000115694 HEK293_OSMI2_6hA HEK293_TMG_6hB STK25 protein_coding protein_coding 232.606 326.1007 143.97 46.53653 4.127613 -1.179494 19.394101 23.257893 10.516849 7.5821413 0.6412585 -1.144267 0.08235417 0.06706667 0.07306667 0.00600000 0.93479763 0.01492479 FALSE TRUE
ENST00000423004 ENSG00000115694 HEK293_OSMI2_6hA HEK293_TMG_6hB STK25 protein_coding protein_coding 232.606 326.1007 143.97 46.53653 4.127613 -1.179494 22.255046 29.608654 10.585049 6.1039104 0.5473247 -1.483116 0.09446667 0.08890000 0.07350000 -0.01540000 0.69694204 0.01492479 FALSE TRUE
ENST00000495143 ENSG00000115694 HEK293_OSMI2_6hA HEK293_TMG_6hB STK25 protein_coding retained_intron 232.606 326.1007 143.97 46.53653 4.127613 -1.179494 7.968904 8.152601 12.150764 0.3014122 2.8050351 0.575133 0.04151667 0.02630000 0.08363333 0.05733333 0.01492479 0.01492479 FALSE TRUE
ENST00000535007 ENSG00000115694 HEK293_OSMI2_6hA HEK293_TMG_6hB STK25 protein_coding protein_coding 232.606 326.1007 143.97 46.53653 4.127613 -1.179494 20.266482 30.541606 10.874996 7.0200593 0.9112187 -1.488907 0.07917917 0.09126667 0.07550000 -0.01576667 0.82059831 0.01492479 FALSE TRUE
MSTRG.20194.6 ENSG00000115694 HEK293_OSMI2_6hA HEK293_TMG_6hB STK25 protein_coding   232.606 326.1007 143.97 46.53653 4.127613 -1.179494 18.385681 27.652258 4.425054 7.1462417 0.7605545 -2.640895 0.07180417 0.08160000 0.03063333 -0.05096667 0.01727478 0.01492479 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000115694 E001 19.752835 1.244196e-02 8.194168e-01 9.077589e-01 2 241492670 241493387 718 - 1.273 1.247 -0.092
ENSG00000115694 E002 6.970820 4.486679e-03 4.562732e-02 1.690858e-01 2 241493388 241493469 82 - 0.588 0.897 1.265
ENSG00000115694 E003 5.139786 7.532249e-03 2.998993e-01 5.403171e-01 2 241493470 241493487 18 - 0.588 0.758 0.719
ENSG00000115694 E004 7.451264 3.055435e-02 5.256921e-01 7.189930e-01 2 241493488 241493540 53 - 0.928 0.834 -0.359
ENSG00000115694 E005 33.475788 4.595323e-02 9.426228e-01 9.735956e-01 2 241493541 241494706 1166 - 1.492 1.465 -0.094
ENSG00000115694 E006 69.731887 5.153811e-01 2.635259e-01 5.027834e-01 2 241494707 241494842 136 - 1.577 1.827 0.848
ENSG00000115694 E007 191.952060 6.184745e-03 1.816877e-02 8.958209e-02 2 241494843 241495016 174 - 2.120 2.242 0.408
ENSG00000115694 E008 91.724874 6.731749e-04 1.737656e-02 8.683250e-02 2 241495017 241495018 2 - 1.811 1.925 0.384
ENSG00000115694 E009 130.309041 2.528547e-03 2.126058e-01 4.447919e-01 2 241495019 241495021 3 - 2.004 2.062 0.196
ENSG00000115694 E010 226.154850 3.302450e-03 5.426654e-01 7.309937e-01 2 241495022 241495045 24 - 2.264 2.293 0.096
ENSG00000115694 E011 229.445445 4.490880e-03 9.919117e-01 9.976749e-01 2 241495046 241495049 4 - 2.288 2.294 0.020
ENSG00000115694 E012 1065.971210 5.184689e-04 1.104591e-05 2.287621e-04 2 241495050 241495248 199 - 2.899 2.977 0.260
ENSG00000115694 E013 1723.799347 5.207721e-04 4.540056e-08 1.827895e-06 2 241495249 241495447 199 - 3.103 3.186 0.279
ENSG00000115694 E014 957.940800 7.043260e-04 8.674701e-07 2.510149e-05 2 241495448 241495489 42 - 2.838 2.935 0.321
ENSG00000115694 E015 957.187616 7.232076e-04 3.566204e-06 8.617911e-05 2 241495490 241495537 48 - 2.842 2.933 0.305
ENSG00000115694 E016 1480.800995 1.071301e-03 6.707271e-05 1.070233e-03 2 241495538 241495701 164 - 3.039 3.119 0.264
ENSG00000115694 E017 4.582836 6.110887e-03 7.025156e-01 8.371633e-01 2 241496396 241496397 2 - 0.648 0.713 0.274
ENSG00000115694 E018 1370.249140 2.286046e-03 4.885591e-04 5.570977e-03 2 241496398 241496534 137 - 2.994 3.087 0.309
ENSG00000115694 E019 12.539895 3.970145e-02 2.535648e-02 1.133039e-01 2 241496535 241496538 4 - 1.276 0.971 -1.096
ENSG00000115694 E020 17.646741 1.046435e-01 1.104375e-01 2.996985e-01 2 241497182 241497299 118 - 1.395 1.115 -0.989
ENSG00000115694 E021 12.692055 1.510864e-01 1.826090e-01 4.074364e-01 2 241497300 241497332 33 - 1.249 0.994 -0.917
ENSG00000115694 E022 16.091137 1.872027e-01 1.308004e-01 3.330373e-01 2 241497333 241497378 46 - 1.384 1.067 -1.120
ENSG00000115694 E023 24.538446 1.566657e-01 5.756711e-02 1.973186e-01 2 241497379 241497615 237 - 1.575 1.228 -1.201
ENSG00000115694 E024 1103.292558 4.944752e-04 2.980949e-08 1.255228e-06 2 241497616 241497687 72 - 2.899 2.995 0.320
ENSG00000115694 E025 1485.403359 3.570021e-04 5.345795e-04 5.989112e-03 2 241498235 241498349 115 - 3.064 3.115 0.170
ENSG00000115694 E026 71.974351 6.429911e-02 1.286259e-01 3.296755e-01 2 241498350 241498509 160 - 1.938 1.736 -0.681
ENSG00000115694 E027 65.054660 6.143516e-02 2.122137e-02 1.000577e-01 2 241498510 241498638 129 - 1.957 1.659 -1.008
ENSG00000115694 E028 975.722717 5.383781e-04 1.584145e-01 3.744057e-01 2 241498639 241498669 31 - 2.900 2.926 0.089
ENSG00000115694 E029 1516.562481 8.965990e-04 2.818636e-01 5.221828e-01 2 241498670 241498742 73 - 3.124 3.107 -0.056
ENSG00000115694 E030 1373.742342 1.664398e-04 2.393066e-02 1.088867e-01 2 241498743 241498784 42 - 3.089 3.064 -0.083
ENSG00000115694 E031 21.128121 5.084630e-02 2.043614e-01 4.350558e-01 2 241498785 241498833 49 - 1.402 1.225 -0.618
ENSG00000115694 E032 1277.073257 6.175244e-04 2.925656e-02 1.251432e-01 2 241498989 241499032 44 - 3.062 3.029 -0.111
ENSG00000115694 E033 1181.232356 7.511223e-05 3.568639e-03 2.675424e-02 2 241499033 241499072 40 - 3.029 2.998 -0.106
ENSG00000115694 E034 1605.804538 5.592507e-05 1.325956e-02 7.147592e-02 2 241499073 241499174 102 - 3.156 3.133 -0.074
ENSG00000115694 E035 3.308714 7.043787e-03 6.202643e-01 7.840119e-01 2 241499175 241499190 16 - 0.648 0.570 -0.342
ENSG00000115694 E036 1258.248887 7.708602e-05 9.389123e-03 5.548751e-02 2 241499257 241499322 66 - 3.054 3.027 -0.091
ENSG00000115694 E037 1278.197320 3.437108e-04 1.202181e-02 6.653822e-02 2 241499323 241499386 64 - 3.065 3.030 -0.117
ENSG00000115694 E038 943.981913 1.143193e-04 3.624372e-02 1.449058e-01 2 241499387 241499406 20 - 2.928 2.902 -0.087
ENSG00000115694 E039 780.238779 1.189998e-04 1.129310e-02 6.357579e-02 2 241499407 241499414 8 - 2.852 2.817 -0.117
ENSG00000115694 E040 72.726716 5.778349e-02 2.143515e-01 4.467796e-01 2 241499415 241499417 3 - 1.910 1.757 -0.516
ENSG00000115694 E041 112.464426 5.303279e-02 2.906052e-01 5.312777e-01 2 241499418 241499509 92 - 2.080 1.951 -0.433
ENSG00000115694 E042 295.534608 6.700774e-02 1.472747e-01 3.584057e-01 2 241499510 241499902 393 - 2.533 2.351 -0.605
ENSG00000115694 E043 172.588631 6.269578e-02 1.827775e-01 4.076089e-01 2 241499903 241500029 127 - 2.289 2.124 -0.554
ENSG00000115694 E044 85.963166 8.311362e-02 3.238600e-01 5.631611e-01 2 241500030 241500046 17 - 1.972 1.832 -0.472
ENSG00000115694 E045 126.999570 7.504190e-02 1.344462e-01 3.387997e-01 2 241500047 241500142 96 - 2.187 1.978 -0.701
ENSG00000115694 E046 83.522006 7.149920e-02 7.979575e-02 2.444072e-01 2 241500143 241500171 29 - 2.035 1.783 -0.849
ENSG00000115694 E047 51.716020 9.102965e-02 6.395909e-02 2.115928e-01 2 241500172 241500172 1 - 1.866 1.557 -1.048
ENSG00000115694 E048 1404.529917 6.609977e-05 3.594409e-09 1.859882e-07 2 241500173 241500259 87 - 3.127 3.065 -0.206
ENSG00000115694 E049 854.749877 7.988812e-05 6.349406e-11 4.682046e-09 2 241500260 241500281 22 - 2.930 2.843 -0.291
ENSG00000115694 E050 841.390190 1.993199e-04 5.633538e-06 1.279187e-04 2 241500740 241500762 23 - 2.907 2.840 -0.221
ENSG00000115694 E051 747.003519 6.840389e-04 3.851391e-04 4.588248e-03 2 241500763 241500779 17 - 2.856 2.788 -0.226
ENSG00000115694 E052 767.834207 2.282566e-04 1.707328e-06 4.541012e-05 2 241500780 241500796 17 - 2.873 2.799 -0.247
ENSG00000115694 E053 22.063402 1.065790e-01 6.456048e-02 2.129152e-01 2 241500797 241500847 51 - 1.507 1.200 -1.068
ENSG00000115694 E054 16.404847 1.182547e-01 7.171833e-02 2.282586e-01 2 241500848 241500859 12 - 1.394 1.073 -1.133
ENSG00000115694 E055 20.243543 1.508559e-01 1.109380e-01 3.004853e-01 2 241500860 241500919 60 - 1.458 1.171 -1.004
ENSG00000115694 E056 33.096663 1.856757e-01 2.057357e-01 4.367419e-01 2 241500920 241501077 158 - 1.623 1.398 -0.771
ENSG00000115694 E057 14.452370 4.682535e-02 5.324447e-03 3.631817e-02 2 241501357 241501392 36 - 1.378 0.998 -1.354
ENSG00000115694 E058 18.359807 1.675411e-01 9.466866e-02 2.723735e-01 2 241501393 241501477 85 - 1.447 1.117 -1.161
ENSG00000115694 E059 929.560696 1.297869e-04 7.036256e-05 1.114247e-03 2 241501478 241501516 39 - 2.941 2.888 -0.175
ENSG00000115694 E060 756.865057 2.597265e-04 5.908267e-05 9.610724e-04 2 241501517 241501527 11 - 2.859 2.797 -0.207
ENSG00000115694 E061 1587.541058 3.249919e-04 1.003318e-01 2.824122e-01 2 241501528 241501708 181 - 3.147 3.127 -0.065
ENSG00000115694 E062 27.996973 3.537051e-02 4.449252e-01 6.620914e-01 2 241501709 241501799 91 - 1.464 1.369 -0.325
ENSG00000115694 E063 22.540078 1.023629e-01 3.091830e-01 5.496728e-01 2 241501832 241502003 172 - 1.422 1.258 -0.569
ENSG00000115694 E064 15.677993 1.148783e-01 1.282308e-01 3.289893e-01 2 241504038 241504096 59 - 1.346 1.074 -0.967
ENSG00000115694 E065 773.967819 2.663570e-04 3.632797e-15 5.654743e-13 2 241508006 241508135 130 - 2.709 2.850 0.470
ENSG00000115694 E066 244.157895 1.187932e-03 3.670840e-19 9.532004e-17 2 241508136 241508317 182 - 2.062 2.377 1.055
ENSG00000115694 E067 19.305552 2.131080e-02 3.160265e-04 3.891483e-03 2 241508318 241508362 45 - 0.830 1.321 1.792
ENSG00000115694 E068 258.104015 3.606186e-03 1.608841e-12 1.594038e-10 2 241508443 241508504 62 - 2.093 2.400 1.029
ENSG00000115694 E069 251.333206 3.742876e-03 8.466607e-12 7.381030e-10 2 241508505 241508695 191 - 2.085 2.388 1.013
ENSG00000115694 E070 0.000000       2 241509223 241509730 508 -