ENSG00000115464

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000398571 ENSG00000115464 HEK293_OSMI2_6hA HEK293_TMG_6hB USP34 protein_coding protein_coding 14.31312 10.94971 19.80106 2.742592 1.515972 0.8540968 4.735673 1.348929 9.835216 0.2712710 0.5268394 2.8569530 0.2840375 0.1309333 0.49946667 0.36853333 8.327932e-08 8.327932e-08 FALSE TRUE
ENST00000411912 ENSG00000115464 HEK293_OSMI2_6hA HEK293_TMG_6hB USP34 protein_coding protein_coding 14.31312 10.94971 19.80106 2.742592 1.515972 0.8540968 1.404076 1.577730 1.195021 0.3457511 0.1174339 -0.3979072 0.1065000 0.1471000 0.06043333 -0.08666667 3.041226e-03 8.327932e-08 FALSE TRUE
ENST00000436269 ENSG00000115464 HEK293_OSMI2_6hA HEK293_TMG_6hB USP34 protein_coding protein_coding 14.31312 10.94971 19.80106 2.742592 1.515972 0.8540968 4.584177 5.551184 3.748915 1.6972399 0.7640907 -0.5650757 0.3640042 0.4918667 0.18610000 -0.30576667 3.043988e-04 8.327932e-08 FALSE TRUE
MSTRG.18490.9 ENSG00000115464 HEK293_OSMI2_6hA HEK293_TMG_6hB USP34 protein_coding   14.31312 10.94971 19.80106 2.742592 1.515972 0.8540968 1.759887 1.661360 2.649031 0.6463243 0.2781040 0.6698782 0.1189542 0.1387667 0.13326667 -0.00550000 9.965346e-01 8.327932e-08 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000115464 E001 6.0163481 0.0104838078 5.946395e-08 2.329492e-06 2 61187463 61187549 87 - 0.466 1.231 3.058
ENSG00000115464 E002 222.4903395 1.5188301390 2.553871e-01 4.940267e-01 2 61187550 61188385 836 - 2.065 2.633 1.899
ENSG00000115464 E003 72.9159982 0.8875320302 1.637300e-01 3.822603e-01 2 61188386 61188473 88 - 1.600 2.140 1.821
ENSG00000115464 E004 97.2687811 1.2426441992 2.425865e-01 4.794726e-01 2 61188474 61188644 171 - 1.722 2.265 1.823
ENSG00000115464 E005 58.9953361 0.8389003056 1.835050e-01 4.084696e-01 2 61188645 61188709 65 - 1.529 2.030 1.694
ENSG00000115464 E006 1.6801537 0.0115920300 4.470291e-03 3.177591e-02 2 61188710 61188741 32 - 0.183 0.713 2.990
ENSG00000115464 E007 89.5669277 1.2197585938 2.477669e-01 4.855907e-01 2 61188910 61189069 160 - 1.703 2.212 1.711
ENSG00000115464 E008 2.5284486 0.1846266225 5.636879e-01 7.458825e-01 2 61189277 61189453 177 - 0.464 0.599 0.635
ENSG00000115464 E009 2.7125895 0.2836697468 6.341515e-01 7.930385e-01 2 61189454 61189697 244 - 0.488 0.605 0.544
ENSG00000115464 E010 8.8553451 0.4393827799 2.213471e-01 4.550983e-01 2 61189698 61190270 573 - 0.822 1.167 1.281
ENSG00000115464 E011 78.7426685 0.9223588311 1.801731e-01 4.042321e-01 2 61190271 61190414 144 - 1.638 2.167 1.781
ENSG00000115464 E012 60.3395919 0.8465556150 1.837340e-01 4.087542e-01 2 61190518 61190626 109 - 1.536 2.043 1.714
ENSG00000115464 E013 40.0592932 0.7202912755 1.613399e-01 3.787354e-01 2 61190627 61190658 32 - 1.365 1.866 1.706
ENSG00000115464 E014 2.4445515 0.5660488146 1.384702e-01 3.452210e-01 2 61190659 61191349 691 - 0.265 0.855 2.875
ENSG00000115464 E015 55.2698493 0.0742834748 6.303991e-02 2.095270e-01 2 61192901 61192980 80 - 1.587 1.893 1.036
ENSG00000115464 E016 1.6140848 0.0121989077 1.152863e-01 3.079298e-01 2 61192981 61193365 385 - 0.273 0.599 1.764
ENSG00000115464 E017 49.1002673 0.0017421289 2.284450e-03 1.895288e-02 2 61203140 61203206 67 - 1.560 1.810 0.849
ENSG00000115464 E018 49.5933460 0.0008432816 1.528768e-03 1.380957e-02 2 61203207 61203263 57 - 1.558 1.810 0.855
ENSG00000115464 E019 80.8325878 0.0053710973 1.605445e-02 8.201225e-02 2 61204256 61204380 125 - 1.777 1.994 0.732
ENSG00000115464 E020 55.7377739 0.0007527209 2.923366e-04 3.652551e-03 2 61204497 61204526 30 - 1.602 1.867 0.895
ENSG00000115464 E021 70.0236581 0.0005593003 1.115110e-04 1.636462e-03 2 61204527 61204601 75 - 1.705 1.961 0.863
ENSG00000115464 E022 77.6578139 0.0005675422 2.429239e-03 1.987764e-02 2 61206017 61206124 108 - 1.766 1.980 0.720
ENSG00000115464 E023 48.1407537 0.0007365332 5.830067e-04 6.428670e-03 2 61206760 61206787 28 - 1.543 1.810 0.906
ENSG00000115464 E024 63.8387860 0.0006801402 3.968613e-04 4.701184e-03 2 61206788 61206886 99 - 1.669 1.919 0.846
ENSG00000115464 E025 1.8010021 0.3181824670 3.874315e-01 6.184476e-01 2 61206887 61208898 2012 - 0.314 0.601 1.498
ENSG00000115464 E026 48.4153497 0.0007978820 1.136176e-01 3.051781e-01 2 61208899 61208977 79 - 1.577 1.746 0.575
ENSG00000115464 E027 70.0774157 0.0011033789 7.181351e-03 4.548894e-02 2 61211772 61211929 158 - 1.719 1.929 0.709
ENSG00000115464 E028 77.8214677 0.0039605350 7.658061e-02 2.379063e-01 2 61214060 61214218 159 - 1.774 1.952 0.602
ENSG00000115464 E029 61.5841662 0.0008191955 3.953426e-01 6.246103e-01 2 61214219 61214278 60 - 1.713 1.751 0.129
ENSG00000115464 E030 123.5758628 0.0064979565 4.380356e-01 6.572411e-01 2 61214279 61214599 321 - 1.987 2.114 0.426
ENSG00000115464 E031 44.4034173 0.0019682686 1.343498e-01 3.386624e-01 2 61214600 61214626 27 - 1.535 1.708 0.588
ENSG00000115464 E032 36.9689863 0.0071381533 2.182844e-01 4.513760e-01 2 61214627 61214627 1 - 1.456 1.631 0.598
ENSG00000115464 E033 54.2260582 0.0013989355 6.883267e-02 2.224428e-01 2 61214628 61214694 67 - 1.617 1.798 0.613
ENSG00000115464 E034 0.1614157 0.0325919186 1.000000e+00   2 61220193 61220309 117 - 0.070 0.000 -8.477
ENSG00000115464 E035 59.9744146 0.0007492363 6.842865e-01 8.254670e-01 2 61220310 61220404 95 - 1.687 1.790 0.349
ENSG00000115464 E036 41.6920412 0.0069019269 6.291336e-01 7.899371e-01 2 61220405 61220457 53 - 1.550 1.596 0.157
ENSG00000115464 E037 49.0023942 0.0026540015 1.738142e-01 3.956284e-01 2 61221502 61221558 57 - 1.628 1.623 -0.016
ENSG00000115464 E038 48.8840627 0.0073921994 7.639871e-01 8.750545e-01 2 61221559 61221606 48 - 1.612 1.670 0.198
ENSG00000115464 E039 0.2852693 0.3244205785 8.217320e-01   2 61221607 61221845 239 - 0.128 0.000 -9.449
ENSG00000115464 E040 39.1976303 0.0065341902 6.389305e-01 7.962332e-01 2 61222619 61222631 13 - 1.521 1.571 0.171
ENSG00000115464 E041 39.6767483 0.0147022055 7.318445e-01 8.553119e-01 2 61222632 61222663 32 - 1.509 1.627 0.404
ENSG00000115464 E042 1.5137642 0.1169403430 6.118747e-01 7.781230e-01 2 61222664 61222975 312 - 0.312 0.449 0.781
ENSG00000115464 E043 62.6551975 0.0092787474 9.675046e-01 9.856881e-01 2 61223060 61223164 105 - 1.709 1.800 0.309
ENSG00000115464 E044 1.2719249 0.1610868559 2.666138e-01   2 61223165 61223247 83 - 0.232 0.523 1.725
ENSG00000115464 E045 52.7257633 0.0038560587 4.856630e-01 6.910178e-01 2 61223248 61223296 49 - 1.625 1.754 0.436
ENSG00000115464 E046 1.5416215 0.0116178003 2.054148e-01 4.363754e-01 2 61223297 61223661 365 - 0.411 0.203 -1.405
ENSG00000115464 E047 3.5216371 0.0075866498 5.989262e-02 2.025560e-01 2 61226788 61227066 279 - 0.492 0.841 1.500
ENSG00000115464 E048 78.3596681 0.0025498806 5.019679e-01 7.021712e-01 2 61227067 61227218 152 - 1.796 1.916 0.404
ENSG00000115464 E049 64.6966849 0.0005883395 6.062272e-01 7.743687e-01 2 61228645 61228719 75 - 1.730 1.786 0.189
ENSG00000115464 E050 85.1098141 0.0004870390 3.294162e-01 5.683938e-01 2 61228827 61228995 169 - 1.851 1.891 0.133
ENSG00000115464 E051 52.2122832 0.0014222298 9.090907e-01 9.566225e-01 2 61229548 61229633 86 - 1.632 1.707 0.256
ENSG00000115464 E052 55.1741652 0.0083944467 3.114459e-01 5.518552e-01 2 61232452 61232532 81 - 1.636 1.782 0.496
ENSG00000115464 E053 51.3024280 0.0021522143 6.255815e-01 7.876376e-01 2 61235845 61235910 66 - 1.616 1.723 0.364
ENSG00000115464 E054 42.7267462 0.0010075655 6.776487e-01 8.212456e-01 2 61236026 61236073 48 - 1.556 1.611 0.187
ENSG00000115464 E055 0.9772399 0.0172671820 5.942982e-01   2 61236074 61236160 87 - 0.273 0.203 -0.557
ENSG00000115464 E056 49.7608796 0.0008700631 4.753808e-01 6.837528e-01 2 61236161 61236236 76 - 1.624 1.665 0.137
ENSG00000115464 E057 1.7583351 0.0123138928 1.600462e-01 3.768600e-01 2 61236237 61236324 88 - 0.439 0.203 -1.555
ENSG00000115464 E058 50.8443063 0.0008257585 5.870209e-01 7.616310e-01 2 61236325 61236389 65 - 1.630 1.681 0.174
ENSG00000115464 E059 63.1601218 0.0034079240 5.342005e-02 1.877058e-01 2 61241560 61241655 96 - 1.743 1.716 -0.091
ENSG00000115464 E060 47.8035515 0.0028801509 1.454522e-02 7.641967e-02 2 61241766 61241819 54 - 1.635 1.557 -0.263
ENSG00000115464 E061 48.7432796 0.0084193981 1.201006e-01 3.160138e-01 2 61245210 61245288 79 - 1.632 1.604 -0.097
ENSG00000115464 E062 64.2901065 0.0036723950 1.059699e-01 2.923110e-01 2 61246324 61246477 154 - 1.743 1.732 -0.035
ENSG00000115464 E063 83.3414849 0.0018768108 6.897194e-02 2.227149e-01 2 61248511 61248683 173 - 1.853 1.845 -0.026
ENSG00000115464 E064 58.7048694 0.0007489094 9.768234e-01 9.901755e-01 2 61256384 61256478 95 - 1.682 1.764 0.279
ENSG00000115464 E065 45.7331048 0.0009505751 9.477207e-01 9.761862e-01 2 61256873 61256950 78 - 1.577 1.653 0.260
ENSG00000115464 E066 50.2287779 0.0164734935 7.562689e-02 2.360706e-01 2 61257052 61257108 57 - 1.653 1.573 -0.273
ENSG00000115464 E067 67.4877589 0.0078846625 5.410309e-03 3.674886e-02 2 61257204 61257350 147 - 1.784 1.676 -0.364
ENSG00000115464 E068 43.8578938 0.0032157054 6.897342e-05 1.095313e-03 2 61259711 61259776 66 - 1.618 1.414 -0.699
ENSG00000115464 E069 0.1723744 0.0658948651 1.648561e-01   2 61265266 61265396 131 - 0.000 0.203 11.974
ENSG00000115464 E070 61.5860326 0.0006420651 2.394217e-03 1.964977e-02 2 61265397 61265557 161 - 1.741 1.659 -0.278
ENSG00000115464 E071 0.0000000       2 61265558 61265560 3 -      
ENSG00000115464 E072 0.0000000       2 61265585 61265983 399 -      
ENSG00000115464 E073 60.5788260 0.0006206541 9.852193e-04 9.802150e-03 2 61265984 61266167 184 - 1.740 1.641 -0.333
ENSG00000115464 E074 0.8048655 0.0193874923 1.756570e-01   2 61277702 61278164 463 - 0.273 0.000 -10.799
ENSG00000115464 E075 48.0102275 0.0011418795 5.606586e-04 6.228754e-03 2 61278165 61278285 121 - 1.648 1.512 -0.463
ENSG00000115464 E076 37.3822057 0.0011324348 6.418834e-02 2.121163e-01 2 61278388 61278443 56 - 1.523 1.479 -0.152
ENSG00000115464 E077 52.9640831 0.0010049821 1.567718e-02 8.065271e-02 2 61280244 61280348 105 - 1.676 1.617 -0.198
ENSG00000115464 E078 51.7747165 0.0008882907 4.864652e-02 1.764792e-01 2 61281090 61281242 153 - 1.656 1.624 -0.110
ENSG00000115464 E079 39.9877571 0.0009338548 5.068374e-01 7.055309e-01 2 61283145 61283269 125 - 1.532 1.571 0.133
ENSG00000115464 E080 28.0614687 0.0011951324 1.581640e-01 3.740254e-01 2 61283409 61283449 41 - 1.401 1.373 -0.096
ENSG00000115464 E081 31.3603465 0.0013287174 9.931207e-03 5.785556e-02 2 61284875 61284957 83 - 1.465 1.350 -0.396
ENSG00000115464 E082 52.4086259 0.0063961092 1.625651e-03 1.450191e-02 2 61288677 61288877 201 - 1.684 1.542 -0.483
ENSG00000115464 E083 33.5612314 0.0377048096 5.728897e-01 7.522627e-01 2 61293464 61293550 87 - 1.464 1.479 0.054
ENSG00000115464 E084 33.3395472 0.0294946020 3.386428e-01 5.767867e-01 2 61294949 61295032 84 - 1.468 1.449 -0.065
ENSG00000115464 E085 46.7991342 0.0094362260 3.227649e-02 1.340529e-01 2 61295168 61295290 123 - 1.625 1.547 -0.263
ENSG00000115464 E086 44.3200845 0.0013106685 2.830099e-03 2.237303e-02 2 61296800 61296925 126 - 1.608 1.496 -0.384
ENSG00000115464 E087 54.1586753 0.0014852076 8.709184e-03 5.252761e-02 2 61300951 61301160 210 - 1.684 1.611 -0.248
ENSG00000115464 E088 36.5359379 0.0060627152 1.863040e-01 4.121717e-01 2 61301354 61301454 101 - 1.504 1.480 -0.080
ENSG00000115464 E089 55.3739759 0.0117837457 5.066003e-02 1.812320e-01 2 61311540 61311687 148 - 1.691 1.615 -0.260
ENSG00000115464 E090 49.9859757 0.0261294883 2.141397e-02 1.006874e-01 2 61311784 61311910 127 - 1.667 1.503 -0.557
ENSG00000115464 E091 52.1824222 0.0112788015 3.763066e-03 2.781074e-02 2 61314585 61314744 160 - 1.683 1.528 -0.527
ENSG00000115464 E092 42.3207174 0.0012840506 8.346500e-04 8.562448e-03 2 61314875 61314974 100 - 1.595 1.452 -0.488
ENSG00000115464 E093 43.0291405 0.0010455118 8.093716e-05 1.253762e-03 2 61317654 61317767 114 - 1.608 1.424 -0.630
ENSG00000115464 E094 53.7824844 0.0008161889 5.066044e-07 1.565946e-05 2 61319173 61319327 155 - 1.714 1.487 -0.772
ENSG00000115464 E095 38.2109548 0.0018311156 4.002938e-06 9.504908e-05 2 61325375 61325457 83 - 1.577 1.314 -0.906
ENSG00000115464 E096 49.0603838 0.0009360500 2.373423e-10 1.553823e-08 2 61331276 61331371 96 - 1.690 1.338 -1.205
ENSG00000115464 E097 40.0571243 0.0057776734 4.868494e-07 1.512314e-05 2 61333882 61333971 90 - 1.599 1.261 -1.170
ENSG00000115464 E098 51.0489225 0.0112816964 1.043748e-08 4.880297e-07 2 61339351 61339478 128 - 1.712 1.286 -1.462
ENSG00000115464 E099 22.1662125 0.1233561672 5.788586e-02 1.980492e-01 2 61339566 61339574 9 - 1.351 1.017 -1.189
ENSG00000115464 E100 44.1966703 0.0444059283 7.717336e-04 8.042711e-03 2 61339575 61339681 107 - 1.645 1.283 -1.244
ENSG00000115464 E101 49.8007079 0.0831410883 1.273200e-02 6.936757e-02 2 61343815 61344029 215 - 1.690 1.386 -1.043
ENSG00000115464 E102 0.0000000       2 61346257 61346347 91 -      
ENSG00000115464 E103 19.8997207 0.0101321571 2.040671e-01 4.347071e-01 2 61347870 61347910 41 - 1.269 1.215 -0.191
ENSG00000115464 E104 67.8082721 0.0005778372 2.315457e-08 1.000809e-06 2 61347911 61348271 361 - 1.810 1.585 -0.762
ENSG00000115464 E105 31.1190042 0.0011653802 2.055601e-03 1.743088e-02 2 61348272 61348330 59 - 1.470 1.314 -0.540
ENSG00000115464 E106 48.5531332 0.0054863368 5.727055e-07 1.748940e-05 2 61348331 61348480 150 - 1.676 1.382 -1.008
ENSG00000115464 E107 45.3640979 0.0184047022 1.118920e-05 2.311939e-04 2 61348756 61348886 131 - 1.654 1.309 -1.185
ENSG00000115464 E108 25.0278136 0.0108856593 7.573679e-06 1.647476e-04 2 61349250 61349285 36 - 1.409 0.996 -1.466
ENSG00000115464 E109 35.7478249 0.0143130180 2.879596e-07 9.504793e-06 2 61350260 61350389 130 - 1.562 1.110 -1.577
ENSG00000115464 E110 32.7626406 0.0063025969 1.870087e-05 3.609316e-04 2 61350568 61350693 126 - 1.511 1.215 -1.027
ENSG00000115464 E111 28.0497589 0.0054693924 9.083133e-07 2.613120e-05 2 61370321 61370413 93 - 1.460 1.067 -1.381
ENSG00000115464 E112 28.5877974 0.0277258141 1.106948e-05 2.291665e-04 2 61370498 61370579 82 - 1.475 1.016 -1.620
ENSG00000115464 E113 27.2419659 0.0298803609 1.781434e-05 3.464198e-04 2 61378363 61378424 62 - 1.455 0.991 -1.646
ENSG00000115464 E114 42.9780497 0.0365950726 5.720861e-06 1.296588e-04 2 61380169 61380361 193 - 1.648 1.159 -1.694
ENSG00000115464 E115 18.4249917 0.0113209827 1.666299e-05 3.270264e-04 2 61383269 61383336 68 - 1.291 0.841 -1.646
ENSG00000115464 E116 31.8613644 0.0041551703 3.949161e-09 2.024323e-07 2 61394853 61395002 150 - 1.517 1.045 -1.658
ENSG00000115464 E117 23.2292308 0.0014774552 1.296680e-08 5.927484e-07 2 61395183 61395233 51 - 1.391 0.877 -1.853
ENSG00000115464 E118 65.7290053 0.0006569514 6.034627e-20 1.782293e-17 2 61405708 61406128 421 - 1.829 1.327 -1.718
ENSG00000115464 E119 19.5091926 0.0024139688 3.933934e-08 1.608263e-06 2 61420746 61420833 88 - 1.321 0.760 -2.070
ENSG00000115464 E120 10.8950440 0.0033889477 1.740411e-05 3.394142e-04 2 61470650 61471192 543 - 1.087 0.529 -2.237