ENSG00000112159

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000369393 ENSG00000112159 HEK293_OSMI2_6hA HEK293_TMG_6hB MDN1 protein_coding protein_coding 24.14793 32.70191 14.19887 6.661958 0.5172971 -1.203024 7.552505 9.145904 8.318525 1.5366885 0.8152373 -0.1366412 0.3975333 0.2853000 0.5835667 0.2982667 2.508020e-05 3.931221e-06 FALSE TRUE
ENST00000487831 ENSG00000112159 HEK293_OSMI2_6hA HEK293_TMG_6hB MDN1 protein_coding nonsense_mediated_decay 24.14793 32.70191 14.19887 6.661958 0.5172971 -1.203024 13.716989 20.196271 2.121291 5.4158986 0.3404549 -3.2450038 0.4255292 0.5973333 0.1506000 -0.4467333 3.931221e-06 3.931221e-06   FALSE
MSTRG.28654.5 ENSG00000112159 HEK293_OSMI2_6hA HEK293_TMG_6hB MDN1 protein_coding   24.14793 32.70191 14.19887 6.661958 0.5172971 -1.203024 2.812577 3.341652 3.523507 0.8416004 0.1313223 0.0762282 0.1721667 0.1166000 0.2494667 0.1328667 3.315842e-01 3.931221e-06 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000112159 E001 0.8875026 0.0339919691 4.375175e-01   6 89642498 89642774 277 - 0.313 0.203 -0.828
ENSG00000112159 E002 50.2998541 0.0257221870 8.682385e-04 8.835502e-03 6 89642775 89642858 84 - 1.451 1.840 1.323
ENSG00000112159 E003 162.1572694 0.0213844974 1.310932e-05 2.655055e-04 6 89642859 89642941 83 - 1.935 2.350 1.391
ENSG00000112159 E004 354.8481007 0.0203354550 1.332052e-08 6.071205e-07 6 89642942 89643212 271 - 2.217 2.706 1.631
ENSG00000112159 E005 433.8000984 0.0118440526 2.819011e-10 1.814757e-08 6 89643213 89643511 299 - 2.356 2.779 1.407
ENSG00000112159 E006 498.9243951 0.0092649258 2.465832e-11 1.983680e-09 6 89643512 89643942 431 - 2.438 2.832 1.313
ENSG00000112159 E007 322.7980180 0.0086825751 3.166988e-07 1.034844e-05 6 89643943 89644193 251 - 2.303 2.624 1.070
ENSG00000112159 E008 265.2452939 0.0171132643 3.497327e-04 4.236885e-03 6 89645015 89645157 143 - 2.221 2.539 1.061
ENSG00000112159 E009 170.1305666 0.0205566059 1.022475e-04 1.523824e-03 6 89646540 89646603 64 - 1.988 2.362 1.249
ENSG00000112159 E010 202.8247329 0.0179220136 1.305587e-03 1.220649e-02 6 89648032 89648146 115 - 2.117 2.417 1.001
ENSG00000112159 E011 157.4609223 0.0208386850 3.626682e-03 2.708179e-02 6 89648256 89648329 74 - 2.009 2.306 0.994
ENSG00000112159 E012 271.3718968 0.0052391808 3.488043e-07 1.127212e-05 6 89650024 89650198 175 - 2.260 2.537 0.924
ENSG00000112159 E013 230.3291048 0.0098725247 1.212531e-05 2.476745e-04 6 89650732 89650847 116 - 2.174 2.472 0.997
ENSG00000112159 E014 228.2370063 0.0033530418 1.061343e-11 9.080126e-10 6 89652192 89652281 90 - 2.154 2.475 1.070
ENSG00000112159 E015 272.7682481 0.0023079947 8.189016e-17 1.582120e-14 6 89652992 89653155 164 - 2.220 2.558 1.125
ENSG00000112159 E016 216.2926490 0.0011944905 5.779586e-09 2.857370e-07 6 89654164 89654334 171 - 2.193 2.431 0.795
ENSG00000112159 E017 220.3521593 0.0006738844 2.534816e-10 1.650576e-08 6 89655764 89655968 205 - 2.201 2.439 0.796
ENSG00000112159 E018 149.5620621 0.0045979182 1.368265e-02 7.309439e-02 6 89656700 89656801 102 - 2.075 2.248 0.578
ENSG00000112159 E019 202.1610134 0.0020197863 1.163942e-01 3.098038e-01 6 89658209 89658370 162 - 2.242 2.359 0.390
ENSG00000112159 E020 300.3130514 0.0017193682 4.585997e-02 1.697045e-01 6 89658610 89658917 308 - 2.411 2.531 0.400
ENSG00000112159 E021 198.1914728 0.0026800449 1.403468e-01 3.480347e-01 6 89661431 89661578 148 - 2.234 2.350 0.387
ENSG00000112159 E022 220.2795372 0.0003573896 3.314563e-02 1.364513e-01 6 89662087 89662239 153 - 2.277 2.395 0.394
ENSG00000112159 E023 235.3736559 0.0002794337 5.313733e-01 7.229901e-01 6 89662792 89662967 176 - 2.345 2.394 0.162
ENSG00000112159 E024 175.4354405 0.0004936382 5.255411e-02 1.856158e-01 6 89664487 89664628 142 - 2.239 2.247 0.027
ENSG00000112159 E025 154.7402476 0.0002866202 6.466155e-01 8.012477e-01 6 89668014 89668151 138 - 2.148 2.226 0.259
ENSG00000112159 E026 0.3088520 0.0263430310 8.126790e-01   6 89670918 89670918 1 - 0.131 0.112 -0.255
ENSG00000112159 E027 144.9168352 0.0028143603 2.203774e-01 4.539863e-01 6 89670919 89671080 162 - 2.101 2.215 0.380
ENSG00000112159 E028 138.1698205 0.0024450286 7.119503e-01 8.430646e-01 6 89672200 89672363 164 - 2.101 2.180 0.262
ENSG00000112159 E029 0.7007164 0.6878501829 8.584291e-01   6 89672364 89672546 183 - 0.238 0.206 -0.267
ENSG00000112159 E030 147.7445200 0.0029012079 7.122496e-01 8.432228e-01 6 89672547 89672702 156 - 2.146 2.190 0.147
ENSG00000112159 E031 150.4174556 0.0012920048 1.110292e-01 3.006603e-01 6 89673236 89673462 227 - 2.174 2.182 0.025
ENSG00000112159 E032 180.8791902 0.0066204599 7.314463e-01 8.550786e-01 6 89674104 89674589 486 - 2.217 2.294 0.256
ENSG00000112159 E033 63.4189567 0.7589623873 3.598025e-01 5.956160e-01 6 89675464 89675579 116 - 1.636 1.910 0.927
ENSG00000112159 E034 72.4100112 0.0581141559 7.445026e-01 8.633761e-01 6 89676102 89676207 106 - 1.819 1.901 0.277
ENSG00000112159 E035 87.1896390 0.0185427163 7.441726e-01 8.631113e-01 6 89677570 89677696 127 - 1.929 1.962 0.111
ENSG00000112159 E036 93.5243265 0.0091610907 4.277949e-01 6.493396e-01 6 89678599 89678745 147 - 1.971 1.981 0.031
ENSG00000112159 E037 91.6233165 0.0126485237 1.109451e-01 3.004949e-01 6 89680589 89680751 163 - 1.994 1.946 -0.161
ENSG00000112159 E038 89.0886017 0.0006956530 4.728483e-03 3.315737e-02 6 89683132 89683330 199 - 1.982 1.938 -0.151
ENSG00000112159 E039 61.4787952 0.0016786049 1.942882e-03 1.668754e-02 6 89683831 89683904 74 - 1.845 1.760 -0.285
ENSG00000112159 E040 60.8490627 0.0006523784 4.456509e-03 3.169121e-02 6 89684876 89684985 110 - 1.829 1.764 -0.222
ENSG00000112159 E041 79.7634376 0.0059991792 2.081967e-02 9.873173e-02 6 89685827 89685973 147 - 1.944 1.880 -0.213
ENSG00000112159 E042 89.3466085 0.0124074585 4.496322e-02 1.675103e-01 6 89686902 89687023 122 - 1.995 1.922 -0.246
ENSG00000112159 E043 86.0534615 0.0057177966 2.304751e-01 4.656638e-01 6 89687344 89687438 95 - 1.942 1.937 -0.015
ENSG00000112159 E044 82.2769133 0.0006337757 8.525556e-01 9.264971e-01 6 89688078 89688173 96 - 1.888 1.944 0.187
ENSG00000112159 E045 136.7347466 0.0009858976 2.616268e-02 1.158066e-01 6 89688573 89688808 236 - 2.145 2.133 -0.040
ENSG00000112159 E046 128.2632567 0.0011860031 4.161739e-05 7.117413e-04 6 89689870 89690143 274 - 2.154 2.074 -0.267
ENSG00000112159 E047 89.0991377 0.0011831554 1.546915e-02 7.985286e-02 6 89690673 89690834 162 - 1.971 1.936 -0.118
ENSG00000112159 E048 211.8734199 0.0087376628 5.506184e-02 1.914689e-01 6 89692443 89693148 706 - 2.349 2.307 -0.143
ENSG00000112159 E049 0.2027342 0.0390092685 6.375004e-01   6 89693149 89693153 5 - 0.000 0.113 8.805
ENSG00000112159 E050 33.3348009 0.0497771043 5.246579e-02 1.853989e-01 6 89694074 89694078 5 - 1.623 1.452 -0.585
ENSG00000112159 E051 62.6736567 0.0496796078 1.036454e-01 2.882805e-01 6 89694079 89694183 105 - 1.865 1.746 -0.404
ENSG00000112159 E052 118.7142333 0.0160935447 1.435849e-01 3.527677e-01 6 89695605 89695992 388 - 2.100 2.058 -0.143
ENSG00000112159 E053 89.6799066 0.0106862343 6.599291e-04 7.097153e-03 6 89696360 89696574 215 - 2.035 1.884 -0.506
ENSG00000112159 E054 74.1647253 0.0173493614 8.922217e-03 5.347629e-02 6 89698865 89699035 171 - 1.947 1.813 -0.449
ENSG00000112159 E055 73.7162117 0.0159195820 2.381779e-02 1.085622e-01 6 89699601 89699727 127 - 1.928 1.826 -0.345
ENSG00000112159 E056 77.5480923 0.0030017150 2.727827e-04 3.456303e-03 6 89700063 89700183 121 - 1.953 1.844 -0.369
ENSG00000112159 E057 61.6066719 0.0061893868 9.298329e-02 2.692918e-01 6 89700184 89700294 111 - 1.817 1.781 -0.121
ENSG00000112159 E058 78.5287351 0.0348025550 1.100178e-01 2.990334e-01 6 89700646 89700856 211 - 1.947 1.860 -0.291
ENSG00000112159 E059 52.8196718 0.0396818461 1.138839e-01 3.055881e-01 6 89701558 89701678 121 - 1.785 1.681 -0.353
ENSG00000112159 E060 46.7109138 0.0304193825 6.919129e-03 4.426382e-02 6 89701904 89702061 158 - 1.780 1.576 -0.694
ENSG00000112159 E061 46.2016673 0.0406467719 1.100682e-02 6.240277e-02 6 89706059 89706192 134 - 1.783 1.555 -0.775
ENSG00000112159 E062 47.8363689 0.0292003652 1.342725e-02 7.210431e-02 6 89707361 89707476 116 - 1.779 1.596 -0.622
ENSG00000112159 E063 47.7208858 0.0252543204 1.762220e-02 8.771742e-02 6 89708496 89708628 133 - 1.769 1.606 -0.552
ENSG00000112159 E064 40.9724539 0.0397385247 3.541863e-02 1.426751e-01 6 89710681 89710794 114 - 1.719 1.517 -0.686
ENSG00000112159 E065 68.1835114 0.0181593001 7.709862e-03 4.797568e-02 6 89712036 89712256 221 - 1.920 1.756 -0.553
ENSG00000112159 E066 75.8177615 0.0177452038 6.710738e-03 4.325493e-02 6 89712575 89712786 212 - 1.962 1.806 -0.526
ENSG00000112159 E067 51.1909728 0.0008298784 4.453940e-04 5.178922e-03 6 89713148 89713296 149 - 1.774 1.662 -0.379
ENSG00000112159 E068 64.5375948 0.0018898507 5.688178e-06 1.290042e-04 6 89714543 89714751 209 - 1.893 1.738 -0.523
ENSG00000112159 E069 52.9327616 0.0011732188 1.072444e-08 4.997961e-07 6 89715653 89715769 117 - 1.841 1.618 -0.755
ENSG00000112159 E070 61.4403469 0.0030977729 9.768356e-06 2.054864e-04 6 89716650 89716809 160 - 1.879 1.711 -0.567
ENSG00000112159 E071 75.1392796 0.0100044853 1.267207e-04 1.820189e-03 6 89718366 89718627 262 - 1.973 1.786 -0.628
ENSG00000112159 E072 66.5420089 0.0187866862 1.628256e-03 1.451905e-02 6 89718767 89719030 264 - 1.924 1.737 -0.631
ENSG00000112159 E073 35.3439091 0.0242475833 2.043242e-03 1.735121e-02 6 89719136 89719225 90 - 1.677 1.437 -0.821
ENSG00000112159 E074 51.6222655 0.0041332742 1.384695e-10 9.531944e-09 6 89722955 89723143 189 - 1.864 1.554 -1.052
ENSG00000112159 E075 42.7415903 0.0009004437 1.580373e-11 1.314961e-09 6 89723512 89723619 108 - 1.779 1.473 -1.044
ENSG00000112159 E076 66.2134749 0.0058401446 1.883983e-11 1.548614e-09 6 89725199 89725396 198 - 1.974 1.647 -1.105
ENSG00000112159 E077 54.0028274 0.0176654625 4.794214e-05 8.029268e-04 6 89727833 89727955 123 - 1.868 1.595 -0.926
ENSG00000112159 E078 60.4044772 0.0218451783 4.778310e-05 8.004211e-04 6 89728931 89729139 209 - 1.925 1.633 -0.985
ENSG00000112159 E079 54.8806387 0.0084813510 1.830785e-07 6.375013e-06 6 89730726 89730923 198 - 1.879 1.599 -0.947
ENSG00000112159 E080 59.4062302 0.0151462717 2.702781e-05 4.929063e-04 6 89732557 89732775 219 - 1.903 1.645 -0.871
ENSG00000112159 E081 48.2153450 0.0086641590 4.657993e-05 7.828148e-04 6 89738326 89738455 130 - 1.794 1.573 -0.749
ENSG00000112159 E082 46.6726220 0.0008250928 2.924997e-09 1.544564e-07 6 89740234 89740378 145 - 1.794 1.548 -0.837
ENSG00000112159 E083 43.4630992 0.0039191810 8.249659e-14 1.044729e-11 6 89743150 89743280 131 - 1.817 1.413 -1.374
ENSG00000112159 E084 36.0146622 0.0024207916 7.663875e-14 9.756389e-12 6 89743576 89743714 139 - 1.742 1.331 -1.409
ENSG00000112159 E085 32.2843112 0.0051481789 3.153448e-11 2.478149e-09 6 89745273 89745411 139 - 1.698 1.287 -1.412
ENSG00000112159 E086 35.9075744 0.0010258520 1.966602e-14 2.762401e-12 6 89745492 89745626 135 - 1.739 1.342 -1.358
ENSG00000112159 E087 35.3555816 0.0010922401 8.928782e-13 9.228926e-11 6 89747329 89747470 142 - 1.725 1.359 -1.253
ENSG00000112159 E088 42.4257171 0.0009844245 8.882321e-14 1.116523e-11 6 89749223 89749369 147 - 1.797 1.450 -1.181
ENSG00000112159 E089 54.9779313 0.0053136945 2.885484e-12 2.746075e-10 6 89749543 89749751 209 - 1.906 1.552 -1.198
ENSG00000112159 E090 48.2451853 0.0132737523 2.215095e-07 7.540070e-06 6 89750354 89750532 179 - 1.845 1.506 -1.151
ENSG00000112159 E091 48.3862879 0.0200045269 3.018674e-08 1.267970e-06 6 89751431 89751582 152 - 1.877 1.453 -1.441
ENSG00000112159 E092 41.5460019 0.0031254067 6.027408e-18 1.372108e-15 6 89753512 89753622 111 - 1.823 1.353 -1.607
ENSG00000112159 E093 40.8032913 0.0010922315 1.009676e-14 1.476884e-12 6 89754083 89754230 148 - 1.784 1.407 -1.287
ENSG00000112159 E094 30.8150166 0.0019630649 2.287023e-08 9.902831e-07 6 89756277 89756390 114 - 1.643 1.342 -1.035
ENSG00000112159 E095 30.9071525 0.0060904003 1.790129e-06 4.727183e-05 6 89758255 89758351 97 - 1.640 1.357 -0.970
ENSG00000112159 E096 37.9358030 0.0009613802 5.492943e-11 4.094943e-09 6 89758816 89758960 145 - 1.736 1.422 -1.074
ENSG00000112159 E097 40.3630868 0.0040790359 1.116760e-11 9.525442e-10 6 89761645 89761748 104 - 1.778 1.411 -1.252
ENSG00000112159 E098 53.4856785 0.0146831362 2.794674e-09 1.484981e-07 6 89762319 89762530 212 - 1.911 1.511 -1.357
ENSG00000112159 E099 29.8649341 0.0122268798 1.004107e-08 4.719637e-07 6 89771561 89771621 61 - 1.673 1.255 -1.443
ENSG00000112159 E100 36.1133105 0.0139557232 1.019946e-06 2.890692e-05 6 89772573 89772721 149 - 1.727 1.387 -1.161
ENSG00000112159 E101 30.5112068 0.0013145499 3.404334e-13 3.821112e-11 6 89774621 89774733 113 - 1.673 1.259 -1.426
ENSG00000112159 E102 31.2655010 0.0241013280 8.926398e-07 2.573697e-05 6 89776600 89776695 96 - 1.688 1.255 -1.492
ENSG00000112159 E103 25.8656056 0.0211659561 6.770537e-06 1.496542e-04 6 89780212 89780293 82 - 1.596 1.208 -1.343
ENSG00000112159 E104 42.7086023 0.0169321536 4.287989e-07 1.353782e-05 6 89781399 89781592 194 - 1.802 1.431 -1.266
ENSG00000112159 E105 36.8711213 0.0042959534 4.079958e-13 4.507942e-11 6 89785012 89785126 115 - 1.754 1.331 -1.450
ENSG00000112159 E106 29.4179897 0.0013008340 1.852846e-12 1.813579e-10 6 89787854 89787957 104 - 1.656 1.252 -1.395
ENSG00000112159 E107 26.1283922 0.0123485138 1.105099e-06 3.097907e-05 6 89789780 89789911 132 - 1.594 1.230 -1.260
ENSG00000112159 E108 33.4420693 0.0118548554 2.642890e-06 6.647268e-05 6 89790159 89790401 243 - 1.682 1.361 -1.099
ENSG00000112159 E109 30.0712963 0.0012790221 5.908187e-12 5.311520e-10 6 89793762 89793954 193 - 1.660 1.273 -1.334
ENSG00000112159 E110 22.8545450 0.0247543304 2.330922e-07 7.885341e-06 6 89794100 89794207 108 - 1.580 1.083 -1.738
ENSG00000112159 E111 39.4146034 0.0577095688 2.272584e-05 4.263084e-04 6 89794577 89794801 225 - 1.809 1.313 -1.697
ENSG00000112159 E112 32.7312344 0.0757090098 1.390977e-03 1.283455e-02 6 89803328 89803554 227 - 1.702 1.300 -1.380
ENSG00000112159 E113 17.4466406 0.0026641265 3.407024e-07 1.104392e-05 6 89819506 89819921 416 - 1.432 1.066 -1.291
ENSG00000112159 E114 2.6233456 0.1501099616 3.303958e-01 5.693391e-01 6 89827928 89828021 94 - 0.624 0.453 -0.803
ENSG00000112159 E115 1.6996860 0.2354074235 8.851163e-01 9.439940e-01 6 89829573 89829612 40 - 0.385 0.448 0.340