ENSG00000110274

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000528706 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding retained_intron 13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 1.2739940 1.8353381 0.8505289 0.7845130 0.06178415 -1.1005897 0.09629583 0.08500000 0.10830000 0.023300000 8.113613e-01 5.380242e-07 FALSE FALSE
ENST00000533433 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding retained_intron 13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 2.2695624 3.1220419 1.1179834 0.4387559 0.14502592 -1.4733576 0.16629583 0.14536667 0.14243333 -0.002933333 1.000000e+00 5.380242e-07 FALSE FALSE
ENST00000533706 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding processed_transcript 13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 0.8003032 0.8223134 0.4939666 0.3641600 0.14469541 -0.7237988 0.06060000 0.03803333 0.06263333 0.024600000 7.431745e-01 5.380242e-07 TRUE TRUE
MSTRG.6384.14 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding   13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 0.3951495 1.3033547 0.0000000 0.1803642 0.00000000 -7.0371128 0.02716667 0.06100000 0.00000000 -0.061000000 5.380242e-07 5.380242e-07 FALSE TRUE
MSTRG.6384.15 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding   13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 0.9885173 2.2500253 0.6744667 1.2104117 0.67446668 -1.7232867 0.07010833 0.10633333 0.08430000 -0.022033333 7.642770e-01 5.380242e-07 FALSE TRUE
MSTRG.6384.17 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding   13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 1.2539892 1.9610444 1.1034558 1.0730425 0.76805345 -0.8239160 0.10146250 0.09276667 0.13940000 0.046633333 1.000000e+00 5.380242e-07 FALSE TRUE
MSTRG.6384.19 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding   13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 1.0539220 1.5165247 0.5723868 0.8049257 0.29851531 -1.3902014 0.07590833 0.06956667 0.07386667 0.004300000 1.000000e+00 5.380242e-07 FALSE TRUE
MSTRG.6384.6 ENSG00000110274 HEK293_OSMI2_6hA HEK293_TMG_6hB CEP164 protein_coding   13.13862 21.44883 7.851671 0.366063 0.1152324 -1.448664 1.9497155 4.6829924 0.7471095 0.9482480 0.40008704 -2.6319343 0.12978750 0.21903333 0.09650000 -0.122533333 7.025679e-01 5.380242e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_6hB HEK293_OSMI2_6hA log2fold_HEK293_OSMI2_6hA_HEK293_TMG_6hB
ENSG00000110274 E001 0.3559677 0.4568517629 6.575094e-02   11 117314557 117314728 172 + 0.358 0.000 -11.802
ENSG00000110274 E002 0.0000000       11 117327847 117327849 3 +      
ENSG00000110274 E003 0.0000000       11 117327850 117327853 4 +      
ENSG00000110274 E004 0.3926045 0.4845600798 8.516072e-01   11 117327854 117327874 21 + 0.000 0.167 11.628
ENSG00000110274 E005 3.7809339 0.0269162546 9.676620e-01 9.857064e-01 11 117327875 117327904 30 + 0.614 0.619 0.019
ENSG00000110274 E006 2.1734541 0.0230683474 5.329328e-01 7.241256e-01 11 117327905 117327918 14 + 0.543 0.425 -0.583
ENSG00000110274 E007 2.1734541 0.0230683474 5.329328e-01 7.241256e-01 11 117327919 117327928 10 + 0.543 0.425 -0.583
ENSG00000110274 E008 2.7689804 0.1468776838 6.041534e-01 7.729798e-01 11 117327929 117328009 81 + 0.614 0.494 -0.557
ENSG00000110274 E009 0.7679007 0.0182090097 9.845549e-01   11 117328010 117328016 7 + 0.210 0.222 0.097
ENSG00000110274 E010 0.7679007 0.0182090097 9.845549e-01   11 117328017 117328029 13 + 0.210 0.222 0.097
ENSG00000110274 E011 1.7079881 0.0112787555 2.838491e-01 5.243224e-01 11 117328030 117328043 14 + 0.210 0.426 1.419
ENSG00000110274 E012 2.0112306 0.0126906774 1.888890e-01 4.155581e-01 11 117328044 117328046 3 + 0.210 0.477 1.681
ENSG00000110274 E013 2.0112306 0.0126906774 1.888890e-01 4.155581e-01 11 117328047 117328051 5 + 0.210 0.477 1.681
ENSG00000110274 E014 2.1477082 0.0149217082 5.167257e-01 7.128564e-01 11 117328052 117328053 2 + 0.352 0.476 0.677
ENSG00000110274 E015 5.0646099 0.0058319290 7.190884e-01 8.476043e-01 11 117328054 117328084 31 + 0.676 0.727 0.214
ENSG00000110274 E016 5.9688006 0.0164441198 6.862760e-01 8.266748e-01 11 117328085 117328102 18 + 0.729 0.789 0.239
ENSG00000110274 E017 7.7373885 0.0054853476 9.282451e-01 9.661402e-01 11 117328103 117328118 16 + 0.859 0.866 0.025
ENSG00000110274 E018 22.8866704 0.0038858343 8.414971e-01 9.203029e-01 11 117328119 117328208 90 + 1.280 1.291 0.038
ENSG00000110274 E019 24.8073955 0.0017255444 6.369389e-01 7.950115e-01 11 117335605 117335680 76 + 1.358 1.313 -0.159
ENSG00000110274 E020 45.6876438 0.0030711756 4.274828e-01 6.490805e-01 11 117338566 117338668 103 + 1.624 1.564 -0.205
ENSG00000110274 E021 50.0069594 0.0010598053 8.112435e-02 2.470817e-01 11 117344166 117344277 112 + 1.706 1.599 -0.365
ENSG00000110274 E022 66.5039975 0.0098144289 3.956061e-01 6.248887e-01 11 117351790 117351988 199 + 1.795 1.731 -0.218
ENSG00000110274 E023 3.3855642 0.2122958296 2.504782e-01 4.885150e-01 11 117354932 117355978 1047 + 0.731 0.512 -0.960
ENSG00000110274 E024 3.8305887 0.0073677024 1.870639e-01 4.131179e-01 11 117355979 117356617 639 + 0.777 0.565 -0.900
ENSG00000110274 E025 2.0807116 0.2229441710 5.107793e-01 7.085709e-01 11 117359432 117359560 129 + 0.550 0.393 -0.790
ENSG00000110274 E026 64.5667570 0.0046510113 2.416336e-01 4.784301e-01 11 117361835 117361993 159 + 1.789 1.714 -0.252
ENSG00000110274 E027 76.0316911 0.0012313400 2.796147e-01 5.197173e-01 11 117362404 117362538 135 + 1.847 1.788 -0.199
ENSG00000110274 E028 44.7874730 0.0008540099 9.266555e-01 9.653969e-01 11 117363429 117363506 78 + 1.584 1.572 -0.041
ENSG00000110274 E029 1.5705534 0.0116765647 9.263318e-03 5.495632e-02 11 117363955 117364043 89 + 0.676 0.222 -2.487
ENSG00000110274 E030 154.4951746 0.0003103450 6.276729e-01 7.889820e-01 11 117371080 117371466 387 + 2.120 2.097 -0.078
ENSG00000110274 E031 70.3992419 0.0009260709 5.409458e-01 7.296956e-01 11 117373751 117373831 81 + 1.797 1.760 -0.126
ENSG00000110274 E032 66.4877023 0.0067261764 5.494464e-01 7.359223e-01 11 117375708 117375791 84 + 1.776 1.733 -0.143
ENSG00000110274 E033 72.0745956 0.0036593398 3.022592e-01 5.428451e-01 11 117380614 117380705 92 + 1.733 1.788 0.188
ENSG00000110274 E034 3.3095509 0.0075587244 1.812674e-01 4.056264e-01 11 117380706 117380714 9 + 0.352 0.603 1.271
ENSG00000110274 E035 85.7161707 0.0025863608 1.917279e-01 4.190289e-01 11 117381701 117381868 168 + 1.802 1.865 0.213
ENSG00000110274 E036 1.1015031 0.0144114456 6.417071e-01   11 117382732 117382795 64 + 0.210 0.301 0.683
ENSG00000110274 E037 7.2885009 0.1324106527 7.368643e-01 8.585283e-01 11 117382796 117382904 109 + 0.784 0.859 0.297
ENSG00000110274 E038 4.4920639 0.0740999630 7.122779e-01 8.432302e-01 11 117382905 117382942 38 + 0.614 0.701 0.372
ENSG00000110274 E039 16.6977325 0.1056758514 4.121302e-01 6.376972e-01 11 117384597 117387202 2606 + 1.238 1.140 -0.350
ENSG00000110274 E040 90.2006130 0.0060279746 8.715171e-01 9.367794e-01 11 117387203 117387412 210 + 1.866 1.867 0.006
ENSG00000110274 E041 106.0891125 0.0005524043 6.432059e-02 2.124045e-01 11 117390777 117390908 132 + 2.001 1.918 -0.277
ENSG00000110274 E042 141.2312363 0.0010738634 1.964903e-02 9.471690e-02 11 117390999 117391215 217 + 2.132 2.038 -0.315
ENSG00000110274 E043 82.7472566 0.0005147373 5.576384e-01 7.415867e-01 11 117392226 117392303 78 + 1.858 1.824 -0.115
ENSG00000110274 E044 105.5217828 0.0006698870 2.994856e-01 5.399045e-01 11 117392496 117392627 132 + 1.904 1.942 0.128
ENSG00000110274 E045 106.0430078 0.0003760454 4.311273e-01 6.520142e-01 11 117393004 117393126 123 + 1.970 1.931 -0.130
ENSG00000110274 E046 110.3192107 0.0005719867 1.023256e-01 2.859558e-01 11 117394350 117394493 144 + 2.014 1.942 -0.242
ENSG00000110274 E047 43.1678030 0.0134346447 9.743622e-01 9.890689e-01 11 117394920 117394924 5 + 1.562 1.559 -0.008
ENSG00000110274 E048 70.3399581 0.0094261893 8.432500e-01 9.212767e-01 11 117394925 117395003 79 + 1.783 1.763 -0.066
ENSG00000110274 E049 2.1179685 0.0142270458 9.838687e-01 9.937407e-01 11 117395004 117395122 119 + 0.458 0.452 -0.033
ENSG00000110274 E050 64.7502816 0.0006693790 4.149077e-01 6.397585e-01 11 117395123 117395191 69 + 1.771 1.722 -0.165
ENSG00000110274 E051 98.1965471 0.0005060416 5.362572e-01 7.264852e-01 11 117395547 117395722 176 + 1.894 1.914 0.069
ENSG00000110274 E052 29.5187057 0.0014923719 9.297230e-01 9.668568e-01 11 117396054 117396056 3 + 1.414 1.401 -0.044
ENSG00000110274 E053 101.6746760 0.0004512134 7.307547e-01 8.546432e-01 11 117396057 117396180 124 + 1.917 1.926 0.028
ENSG00000110274 E054 86.8618978 0.0005783242 5.950082e-01 7.670697e-01 11 117396550 117396611 62 + 1.839 1.857 0.062
ENSG00000110274 E055 147.3252747 0.0003750812 1.181545e-01 3.128124e-01 11 117397091 117397313 223 + 2.042 2.092 0.168
ENSG00000110274 E056 98.1919626 0.0004235766 9.462145e-01 9.754673e-01 11 117407925 117408032 108 + 1.914 1.905 -0.032
ENSG00000110274 E057 10.5665716 0.1554769954 8.981613e-02 2.634605e-01 11 117408526 117408755 230 + 1.204 0.894 -1.136
ENSG00000110274 E058 105.4350067 0.0029847299 4.533789e-01 6.682651e-01 11 117408890 117409004 115 + 1.911 1.940 0.098
ENSG00000110274 E059 37.9498005 0.0014688044 8.124653e-01 9.036775e-01 11 117409005 117409016 12 + 1.490 1.500 0.032
ENSG00000110274 E060 37.8586760 0.0012080394 9.621339e-01 9.831068e-01 11 117409017 117409028 12 + 1.507 1.497 -0.035
ENSG00000110274 E061 31.3117752 0.1635377578 3.710543e-02 1.471935e-01 11 117409029 117409617 589 + 1.657 1.330 -1.124
ENSG00000110274 E062 117.0270136 0.0004229710 1.085936e-01 2.967361e-01 11 117409618 117409811 194 + 1.933 1.992 0.197
ENSG00000110274 E063 101.2697808 0.0051071115 1.657098e-01 3.847553e-01 11 117409812 117409965 154 + 1.867 1.934 0.226
ENSG00000110274 E064 8.4132476 0.0041639169 3.283728e-02 1.355972e-01 11 117409966 117410701 736 + 1.087 0.825 -0.982
ENSG00000110274 E065 76.2299710 0.0005991946 6.202043e-02 2.073131e-01 11 117410828 117410894 67 + 1.727 1.816 0.300
ENSG00000110274 E066 18.5919281 0.0781348667 3.560967e-01 5.925926e-01 11 117411112 117411427 316 + 1.307 1.178 -0.455
ENSG00000110274 E067 36.5405926 0.0562439001 5.274380e-02 1.861024e-01 11 117411428 117411794 367 + 1.668 1.418 -0.854
ENSG00000110274 E068 122.2506228 0.0016519114 3.769575e-01 6.098278e-01 11 117411795 117411917 123 + 1.975 2.006 0.103
ENSG00000110274 E069 454.8698290 0.0001605965 8.694133e-07 2.514842e-05 11 117412072 117413266 1195 + 2.493 2.586 0.312